data_A1CY5 # _chem_comp.id A1CY5 _chem_comp.name "methyl N-{[(2R)-1-({(5R,8S)-5-[(3-fluorophenyl)methyl]-2,7-dioxo-1,6-diazacyclododecan-8-yl}amino)-1-oxo-3-phenylpropan-2-yl]carbamoyl}-L-valinate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H44 F N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-23 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.731 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CY5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9YUZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CY5 C02 C1 C 0 1 Y N N N N N 164.966 205.992 166.345 6.350 3.398 0.482 C02 A1CY5 1 A1CY5 C03 C2 C 0 1 Y N N N N N 165.565 204.906 165.758 5.400 2.461 0.850 C03 A1CY5 2 A1CY5 C04 C3 C 0 1 Y N N N N N 166.620 205.113 164.873 5.397 1.212 0.258 C04 A1CY5 3 A1CY5 C05 C4 C 0 1 Y N N N N N 167.013 206.419 164.612 6.343 0.898 -0.700 C05 A1CY5 4 A1CY5 C06 C5 C 0 1 N N N N N N 167.326 203.955 164.184 4.363 0.191 0.658 C06 A1CY5 5 A1CY5 C07 C6 C 0 1 N N R N N N 167.128 202.554 164.775 3.008 0.577 0.062 C07 A1CY5 6 A1CY5 C08 C7 C 0 1 N N N N N N 167.853 201.572 163.844 3.127 0.681 -1.460 C08 A1CY5 7 A1CY5 C09 C8 C 0 1 N N N N N N 168.883 200.680 164.533 3.956 -0.491 -1.988 C09 A1CY5 8 A1CY5 C10 C9 C 0 1 N N N N N N 168.291 199.677 165.492 3.113 -1.740 -1.996 C10 A1CY5 9 A1CY5 C13 C10 C 0 1 N N N N N N 168.804 198.190 167.413 2.692 -4.024 -2.570 C13 A1CY5 10 A1CY5 C14 C11 C 0 1 N N N N N N 169.385 198.692 168.721 2.691 -4.559 -1.136 C14 A1CY5 11 A1CY5 C16 C12 C 0 1 N N N N N N 166.799 202.108 167.149 2.401 -1.383 1.318 C16 A1CY5 12 A1CY5 C18 C13 C 0 1 N N S N N N 167.387 202.022 168.558 1.446 -2.484 1.702 C18 A1CY5 13 A1CY5 C20 C14 C 0 1 N N N N N N 166.842 203.431 170.472 -0.726 -1.390 1.852 C20 A1CY5 14 A1CY5 C22 C15 C 0 1 N N R N N N 165.831 203.700 171.586 -2.094 -1.083 1.298 C22 A1CY5 15 A1CY5 C23 C16 C 0 1 N N N N N N 166.508 203.572 172.959 -2.877 -2.386 1.121 C23 A1CY5 16 A1CY5 C24 C17 C 0 1 Y N N N N N 167.229 202.265 173.185 -4.196 -2.092 0.455 C24 A1CY5 17 A1CY5 C25 C18 C 0 1 Y N N N N N 166.560 201.159 173.695 -4.315 -2.193 -0.919 C25 A1CY5 18 A1CY5 C26 C19 C 0 1 Y N N N N N 167.226 199.961 173.901 -5.525 -1.924 -1.530 C26 A1CY5 19 A1CY5 C27 C20 C 0 1 Y N N N N N 168.563 199.852 173.606 -6.617 -1.554 -0.767 C27 A1CY5 20 A1CY5 C28 C21 C 0 1 Y N N N N N 168.584 202.136 172.899 -5.290 -1.728 1.218 C28 A1CY5 21 A1CY5 C29 C22 C 0 1 Y N N N N N 169.243 200.935 173.105 -6.499 -1.453 0.607 C29 A1CY5 22 A1CY5 C31 C23 C 0 1 N N N N N N 163.938 205.141 171.040 -3.436 0.896 1.765 C31 A1CY5 23 A1CY5 C34 C24 C 0 1 N N S N N N 162.172 206.691 170.416 -4.049 2.401 -0.051 C34 A1CY5 24 A1CY5 C35 C25 C 0 1 N N N N N N 162.184 207.773 169.352 -4.738 2.147 -1.367 C35 A1CY5 25 A1CY5 C38 C26 C 0 1 N N N N N N 163.452 209.469 168.331 -6.179 2.767 -3.161 C38 A1CY5 26 A1CY5 C39 C27 C 0 1 N N N N N N 161.265 207.069 171.599 -2.944 3.440 -0.246 C39 A1CY5 27 A1CY5 C40 C28 C 0 1 N N N N N N 161.601 208.456 172.124 -3.568 4.778 -0.648 C40 A1CY5 28 A1CY5 C41 C29 C 0 1 N N N N N N 159.788 206.962 171.246 -2.168 3.612 1.061 C41 A1CY5 29 A1CY5 C42 C30 C 0 1 N N N N N N 167.703 200.562 168.893 1.942 -3.812 1.127 C42 A1CY5 30 A1CY5 C43 C31 C 0 1 N N N N N N 169.173 200.196 168.851 1.553 -3.907 -0.349 C43 A1CY5 31 A1CY5 C44 C32 C 0 1 Y N N N N N 165.344 207.274 166.101 7.293 3.085 -0.483 C44 A1CY5 32 A1CY5 C45 C33 C 0 1 Y N N N N N 166.381 207.483 165.224 7.292 1.833 -1.068 C45 A1CY5 33 A1CY5 F01 F1 F 0 1 N N N N N N 163.950 205.780 167.210 6.354 4.620 1.059 F01 A1CY5 34 A1CY5 N12 N1 N 0 1 N N N N N N 169.157 199.076 166.314 3.611 -2.855 -2.629 N12 A1CY5 35 A1CY5 N15 N2 N 0 1 N N N N N N 167.613 202.494 166.155 2.006 -0.464 0.387 N15 A1CY5 36 A1CY5 N19 N3 N 0 1 N N N N N N 166.470 202.524 169.563 0.116 -2.185 1.163 N19 A1CY5 37 A1CY5 N30 N4 N 0 1 N N N N N N 165.227 205.010 171.421 -2.811 -0.205 2.226 N30 A1CY5 38 A1CY5 N33 N5 N 0 1 N N N N N N 163.528 206.416 170.862 -3.463 1.152 0.442 N33 A1CY5 39 A1CY5 O11 O1 O 0 1 N N N N N N 167.086 199.419 165.509 2.026 -1.762 -1.459 O11 A1CY5 40 A1CY5 O17 O2 O 0 1 N N N N N N 165.618 201.810 166.960 3.500 -1.314 1.827 O17 A1CY5 41 A1CY5 O21 O3 O 0 1 N N N N N N 167.948 203.976 170.467 -0.384 -0.921 2.917 O21 A1CY5 42 A1CY5 O32 O4 O 0 1 N N N N N N 163.200 204.174 170.849 -3.977 1.659 2.543 O32 A1CY5 43 A1CY5 O36 O5 O 0 1 N N N N N N 161.258 208.035 168.639 -4.561 1.104 -1.951 O36 A1CY5 44 A1CY5 O37 O6 O 0 1 N N N N N N 163.352 208.405 169.307 -5.549 3.079 -1.891 O37 A1CY5 45 A1CY5 H1 H1 H 0 1 N N N N N N 165.223 203.906 165.979 4.661 2.705 1.599 H1 A1CY5 46 A1CY5 H2 H2 H 0 1 N N N N N N 167.823 206.605 163.922 6.340 -0.078 -1.162 H2 A1CY5 47 A1CY5 H3 H3 H 0 1 N N N N N N 168.405 204.170 164.200 4.657 -0.790 0.285 H3 A1CY5 48 A1CY5 H4 H4 H 0 1 N N N N N N 166.973 203.926 163.143 4.286 0.159 1.745 H4 A1CY5 49 A1CY5 H5 H5 H 0 1 N N N N N N 166.054 202.319 164.757 2.687 1.535 0.473 H5 A1CY5 50 A1CY5 H6 H6 H 0 1 N N N N N N 168.370 202.155 163.067 2.132 0.652 -1.905 H6 A1CY5 51 A1CY5 H7 H7 H 0 1 N N N N N N 167.098 200.924 163.375 3.615 1.620 -1.723 H7 A1CY5 52 A1CY5 H8 H8 H 0 1 N N N N N N 169.437 200.130 163.758 4.291 -0.271 -3.002 H8 A1CY5 53 A1CY5 H9 H9 H 0 1 N N N N N N 169.577 201.324 165.093 4.823 -0.641 -1.345 H9 A1CY5 54 A1CY5 H10 H10 H 0 1 N N N N N N 167.708 198.143 167.500 3.039 -4.800 -3.252 H10 A1CY5 55 A1CY5 H11 H11 H 0 1 N N N N N N 169.199 197.184 167.206 1.684 -3.714 -2.847 H11 A1CY5 56 A1CY5 H12 H12 H 0 1 N N N N N N 168.887 198.182 169.559 2.549 -5.640 -1.152 H12 A1CY5 57 A1CY5 H13 H13 H 0 1 N N N N N N 170.463 198.474 168.747 3.643 -4.325 -0.660 H13 A1CY5 58 A1CY5 H14 H14 H 0 1 N N N N N N 168.322 202.600 168.586 1.391 -2.555 2.788 H14 A1CY5 59 A1CY5 H15 H15 H 0 1 N N N N N N 165.045 202.933 171.524 -1.992 -0.586 0.333 H15 A1CY5 60 A1CY5 H16 H16 H 0 1 N N N N N N 167.238 204.388 173.059 -2.302 -3.074 0.501 H16 A1CY5 61 A1CY5 H17 H17 H 0 1 N N N N N N 165.734 203.675 173.734 -3.055 -2.838 2.097 H17 A1CY5 62 A1CY5 H18 H18 H 0 1 N N N N N N 165.509 201.234 173.934 -3.461 -2.482 -1.514 H18 A1CY5 63 A1CY5 H19 H19 H 0 1 N N N N N N 166.691 199.109 174.295 -5.617 -2.003 -2.603 H19 A1CY5 64 A1CY5 H20 H20 H 0 1 N N N N N N 169.078 198.917 173.768 -7.563 -1.344 -1.245 H20 A1CY5 65 A1CY5 H21 H21 H 0 1 N N N N N N 169.130 202.983 172.511 -5.197 -1.649 2.291 H21 A1CY5 66 A1CY5 H22 H22 H 0 1 N N N N N N 170.294 200.850 172.871 -7.353 -1.169 1.203 H22 A1CY5 67 A1CY5 H23 H23 H 0 1 N N N N N N 161.760 205.778 169.962 -4.774 2.772 0.673 H23 A1CY5 68 A1CY5 H24 H24 H 0 1 N N N N N N 164.454 209.920 168.381 -6.793 1.873 -3.052 H24 A1CY5 69 A1CY5 H25 H25 H 0 1 N N N N N N 163.284 209.060 167.324 -6.806 3.603 -3.471 H25 A1CY5 70 A1CY5 H26 H26 H 0 1 N N N N N N 162.694 210.236 168.546 -5.411 2.591 -3.914 H26 A1CY5 71 A1CY5 H27 H27 H 0 1 N N N N N N 161.465 206.351 172.408 -2.265 3.106 -1.031 H27 A1CY5 72 A1CY5 H28 H28 H 0 1 N N N N N N 160.939 208.700 172.968 -4.247 5.113 0.136 H28 A1CY5 73 A1CY5 H29 H29 H 0 1 N N N N N N 162.648 208.476 172.462 -2.780 5.519 -0.787 H29 A1CY5 74 A1CY5 H30 H30 H 0 1 N N N N N N 161.460 209.196 171.322 -4.120 4.656 -1.580 H30 A1CY5 75 A1CY5 H31 H31 H 0 1 N N N N N N 159.181 207.241 172.120 -1.644 2.686 1.297 H31 A1CY5 76 A1CY5 H32 H32 H 0 1 N N N N N N 159.561 207.640 170.410 -1.446 4.421 0.952 H32 A1CY5 77 A1CY5 H33 H33 H 0 1 N N N N N N 159.555 205.928 170.953 -2.862 3.851 1.867 H33 A1CY5 78 A1CY5 H34 H34 H 0 1 N N N N N N 167.330 200.357 169.907 3.027 -3.866 1.221 H34 A1CY5 79 A1CY5 H35 H35 H 0 1 N N N N N N 167.172 199.924 168.171 1.489 -4.637 1.676 H35 A1CY5 80 A1CY5 H36 H36 H 0 1 N N N N N N 169.652 200.543 169.779 1.367 -2.907 -0.741 H36 A1CY5 81 A1CY5 H37 H37 H 0 1 N N N N N N 169.639 200.696 167.989 0.650 -4.510 -0.449 H37 A1CY5 82 A1CY5 H38 H38 H 0 1 N N N N N N 164.845 208.103 166.581 8.032 3.817 -0.774 H38 A1CY5 83 A1CY5 H39 H39 H 0 1 N N N N N N 166.705 208.491 165.011 8.031 1.587 -1.817 H39 A1CY5 84 A1CY5 H40 H40 H 0 1 N N N N N N 170.130 199.250 166.161 4.474 -2.876 -3.071 H40 A1CY5 85 A1CY5 H41 H41 H 0 1 N N N N N N 168.560 202.743 166.359 1.132 -0.492 -0.031 H41 A1CY5 86 A1CY5 H42 H42 H 0 1 N N N N N N 165.531 202.181 169.577 -0.157 -2.560 0.312 H42 A1CY5 87 A1CY5 H43 H43 H 0 1 N N N N N N 165.775 205.829 171.592 -2.835 -0.416 3.173 H43 A1CY5 88 A1CY5 H44 H44 H 0 1 N N N N N N 164.159 207.172 171.037 -3.094 0.509 -0.184 H44 A1CY5 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CY5 C08 C09 SING N N 1 A1CY5 C08 C07 SING N N 2 A1CY5 C06 C07 SING N N 3 A1CY5 C06 C04 SING N N 4 A1CY5 C09 C10 SING N N 5 A1CY5 C05 C04 DOUB Y N 6 A1CY5 C05 C45 SING Y N 7 A1CY5 C07 N15 SING N N 8 A1CY5 C04 C03 SING Y N 9 A1CY5 C45 C44 DOUB Y N 10 A1CY5 C10 O11 DOUB N N 11 A1CY5 C10 N12 SING N N 12 A1CY5 C03 C02 DOUB Y N 13 A1CY5 C44 C02 SING Y N 14 A1CY5 N15 C16 SING N N 15 A1CY5 N12 C13 SING N N 16 A1CY5 C02 F01 SING N N 17 A1CY5 O17 C16 DOUB N N 18 A1CY5 C16 C18 SING N N 19 A1CY5 C13 C14 SING N N 20 A1CY5 C38 O37 SING N N 21 A1CY5 C18 C42 SING N N 22 A1CY5 C18 N19 SING N N 23 A1CY5 O36 C35 DOUB N N 24 A1CY5 C14 C43 SING N N 25 A1CY5 C43 C42 SING N N 26 A1CY5 O37 C35 SING N N 27 A1CY5 C35 C34 SING N N 28 A1CY5 N19 C20 SING N N 29 A1CY5 C34 N33 SING N N 30 A1CY5 C34 C39 SING N N 31 A1CY5 O21 C20 DOUB N N 32 A1CY5 C20 C22 SING N N 33 A1CY5 O32 C31 DOUB N N 34 A1CY5 N33 C31 SING N N 35 A1CY5 C31 N30 SING N N 36 A1CY5 C41 C39 SING N N 37 A1CY5 N30 C22 SING N N 38 A1CY5 C22 C23 SING N N 39 A1CY5 C39 C40 SING N N 40 A1CY5 C28 C29 DOUB Y N 41 A1CY5 C28 C24 SING Y N 42 A1CY5 C23 C24 SING N N 43 A1CY5 C29 C27 SING Y N 44 A1CY5 C24 C25 DOUB Y N 45 A1CY5 C27 C26 DOUB Y N 46 A1CY5 C25 C26 SING Y N 47 A1CY5 C03 H1 SING N N 48 A1CY5 C05 H2 SING N N 49 A1CY5 C06 H3 SING N N 50 A1CY5 C06 H4 SING N N 51 A1CY5 C07 H5 SING N N 52 A1CY5 C08 H6 SING N N 53 A1CY5 C08 H7 SING N N 54 A1CY5 C09 H8 SING N N 55 A1CY5 C09 H9 SING N N 56 A1CY5 C13 H10 SING N N 57 A1CY5 C13 H11 SING N N 58 A1CY5 C14 H12 SING N N 59 A1CY5 C14 H13 SING N N 60 A1CY5 C18 H14 SING N N 61 A1CY5 C22 H15 SING N N 62 A1CY5 C23 H16 SING N N 63 A1CY5 C23 H17 SING N N 64 A1CY5 C25 H18 SING N N 65 A1CY5 C26 H19 SING N N 66 A1CY5 C27 H20 SING N N 67 A1CY5 C28 H21 SING N N 68 A1CY5 C29 H22 SING N N 69 A1CY5 C34 H23 SING N N 70 A1CY5 C38 H24 SING N N 71 A1CY5 C38 H25 SING N N 72 A1CY5 C38 H26 SING N N 73 A1CY5 C39 H27 SING N N 74 A1CY5 C40 H28 SING N N 75 A1CY5 C40 H29 SING N N 76 A1CY5 C40 H30 SING N N 77 A1CY5 C41 H31 SING N N 78 A1CY5 C41 H32 SING N N 79 A1CY5 C41 H33 SING N N 80 A1CY5 C42 H34 SING N N 81 A1CY5 C42 H35 SING N N 82 A1CY5 C43 H36 SING N N 83 A1CY5 C43 H37 SING N N 84 A1CY5 C44 H38 SING N N 85 A1CY5 C45 H39 SING N N 86 A1CY5 N12 H40 SING N N 87 A1CY5 N15 H41 SING N N 88 A1CY5 N19 H42 SING N N 89 A1CY5 N30 H43 SING N N 90 A1CY5 N33 H44 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CY5 SMILES ACDLabs 14.52 "O=C(OC)C(NC(=O)NC(Cc1ccccc1)C(=O)NC1CCCCNC(=O)CCC(Cc2cccc(F)c2)NC1=O)C(C)C" A1CY5 InChI InChI 1.06 "InChI=1S/C33H44FN5O6/c1-21(2)29(32(43)45-3)39-33(44)38-27(20-22-10-5-4-6-11-22)31(42)37-26-14-7-8-17-35-28(40)16-15-25(36-30(26)41)19-23-12-9-13-24(34)18-23/h4-6,9-13,18,21,25-27,29H,7-8,14-17,19-20H2,1-3H3,(H,35,40)(H,36,41)(H,37,42)(H2,38,39,44)/t25-,26+,27-,29+/m1/s1" A1CY5 InChIKey InChI 1.06 JXWBMCOYNYABKK-LEZVCQOQSA-N A1CY5 SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H](NC(=O)N[C@H](Cc1ccccc1)C(=O)N[C@H]2CCCCNC(=O)CC[C@H](Cc3cccc(F)c3)NC2=O)C(C)C" A1CY5 SMILES CACTVS 3.385 "COC(=O)[CH](NC(=O)N[CH](Cc1ccccc1)C(=O)N[CH]2CCCCNC(=O)CC[CH](Cc3cccc(F)c3)NC2=O)C(C)C" A1CY5 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@@H](C(=O)OC)NC(=O)N[C@H](Cc1ccccc1)C(=O)N[C@H]2CCCCNC(=O)CC[C@@H](NC2=O)Cc3cccc(c3)F" A1CY5 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(C(=O)OC)NC(=O)NC(Cc1ccccc1)C(=O)NC2CCCCNC(=O)CCC(NC2=O)Cc3cccc(c3)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CY5 "SYSTEMATIC NAME" ACDLabs 14.52 "methyl N-{[(2R)-1-({(5R,8S)-5-[(3-fluorophenyl)methyl]-2,7-dioxo-1,6-diazacyclododecan-8-yl}amino)-1-oxo-3-phenylpropan-2-yl]carbamoyl}-L-valinate" A1CY5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "methyl (2~{S})-2-[[(2~{R})-1-[[(5~{R},8~{S})-5-[(3-fluorophenyl)methyl]-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]carbamoylamino]-3-methyl-butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CY5 "Create component" 2025-10-23 RCSB A1CY5 "Modify PCM" 2025-10-23 RCSB A1CY5 "Initial release" 2026-04-15 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1CY5 _pdbx_chem_comp_pcm.modified_residue_id THR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C08 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #