data_A1CY6 # _chem_comp.id A1CY6 _chem_comp.name "methyl N-{[(2R)-1-({(5R,8R)-5-[(3-fluorophenyl)methyl]-2,7-dioxo-1,6-diazacyclododecan-8-yl}amino)-1-oxo-3-phenylpropan-2-yl]carbamoyl}-L-valinate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H44 F N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-23 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.731 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CY6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9YUY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CY6 C02 C1 C 0 1 Y N N N N N 196.192 166.628 185.286 2.641 3.904 0.027 C02 A1CY6 1 A1CY6 C03 C2 C 0 1 Y N N N N N 194.864 166.310 185.431 2.700 2.751 0.791 C03 A1CY6 2 A1CY6 C04 C3 C 0 1 Y N N N N N 194.106 166.979 186.390 3.895 2.368 1.371 C04 A1CY6 3 A1CY6 C05 C4 C 0 1 Y N N N N N 194.734 167.952 187.160 5.030 3.135 1.188 C05 A1CY6 4 A1CY6 C06 C5 C 0 1 N N N N N N 192.629 166.671 186.594 3.960 1.113 2.203 C06 A1CY6 5 A1CY6 C07 C6 C 0 1 N N R N N N 192.183 165.231 186.305 4.308 -0.076 1.306 C07 A1CY6 6 A1CY6 C08 C7 C 0 1 N N N N N N 191.057 164.859 187.280 4.497 -1.329 2.164 C08 A1CY6 7 A1CY6 C09 C8 C 0 1 N N N N N N 190.240 163.647 186.842 5.234 -2.397 1.353 C09 A1CY6 8 A1CY6 C10 C9 C 0 1 N N N N N N 189.157 163.996 185.848 4.280 -3.035 0.377 C10 A1CY6 9 A1CY6 C13 C10 C 0 1 N N N N N N 188.142 165.866 184.526 3.671 -4.697 -1.233 C13 A1CY6 10 A1CY6 C14 C11 C 0 1 N N N N N N 187.919 164.976 183.310 3.562 -3.743 -2.425 C14 A1CY6 11 A1CY6 C16 C12 C 0 1 N N N N N N 192.435 164.557 183.923 3.472 -0.000 -0.949 C16 A1CY6 12 A1CY6 C18 C13 C 0 1 N N R N N N 191.696 164.327 182.601 2.403 -0.225 -1.988 C18 A1CY6 13 A1CY6 C20 C14 C 0 1 N N N N N N 192.801 165.633 180.821 0.338 0.496 -0.914 C20 A1CY6 14 A1CY6 C22 C15 C 0 1 N N R N N N 193.442 165.502 179.440 -0.972 0.198 -0.231 C22 A1CY6 15 A1CY6 C23 C16 C 0 1 N N N N N N 192.610 166.261 178.395 -0.711 -0.606 1.044 C23 A1CY6 16 A1CY6 C24 C17 C 0 1 Y N N N N N 191.164 165.831 178.379 -2.024 -0.959 1.693 C24 A1CY6 17 A1CY6 C25 C18 C 0 1 Y N N N N N 190.172 166.645 178.914 -2.727 -2.071 1.270 C25 A1CY6 18 A1CY6 C26 C19 C 0 1 Y N N N N N 188.845 166.247 178.901 -3.932 -2.395 1.865 C26 A1CY6 19 A1CY6 C27 C20 C 0 1 Y N N N N N 188.492 165.033 178.360 -4.434 -1.607 2.883 C27 A1CY6 20 A1CY6 C28 C21 C 0 1 Y N N N N N 190.789 164.607 177.839 -2.523 -0.174 2.716 C28 A1CY6 21 A1CY6 C29 C22 C 0 1 Y N N N N N 189.460 164.214 177.829 -3.731 -0.494 3.307 C29 A1CY6 22 A1CY6 C31 C23 C 0 1 N N N N N N 195.787 165.265 180.101 -2.983 1.546 0.042 C31 A1CY6 23 A1CY6 C34 C24 C 0 1 N N S N N N 198.175 165.190 180.638 -5.149 0.655 -0.631 C34 A1CY6 24 A1CY6 C35 C25 C 0 1 N N N N N N 198.783 166.272 181.509 -5.837 -0.628 -0.245 C35 A1CY6 25 A1CY6 C38 C26 C 0 1 N N N N N N 200.239 166.762 183.282 -7.717 -1.883 0.511 C38 A1CY6 26 A1CY6 C39 C27 C 0 1 N N N N N N 199.204 164.599 179.660 -5.436 0.966 -2.101 C39 A1CY6 27 A1CY6 C40 C28 C 0 1 N N N N N N 199.808 165.677 178.771 -6.949 1.023 -2.324 C40 A1CY6 28 A1CY6 C41 C29 C 0 1 N N N N N N 200.293 163.826 180.390 -4.815 2.316 -2.468 C41 A1CY6 29 A1CY6 C42 C30 C 0 1 N N N N N N 190.382 165.112 182.526 2.796 -1.408 -2.875 C42 A1CY6 30 A1CY6 C43 C31 C 0 1 N N N N N N 189.173 164.245 182.842 2.459 -2.717 -2.158 C43 A1CY6 31 A1CY6 C44 C32 C 0 1 Y N N N N N 196.817 167.576 186.035 3.779 4.672 -0.156 C44 A1CY6 32 A1CY6 C45 C33 C 0 1 Y N N N N N 196.074 168.242 186.982 4.972 4.287 0.425 C45 A1CY6 33 A1CY6 F01 F1 F 0 1 N N N N N N 196.914 165.966 184.348 1.475 4.277 -0.544 F01 A1CY6 34 A1CY6 N12 N1 N 0 1 N N N N N N 189.051 165.285 185.504 4.696 -4.158 -0.298 N12 A1CY6 35 A1CY6 N15 N2 N 0 1 N N N N N N 191.724 165.102 184.921 3.202 -0.320 0.352 N15 A1CY6 36 A1CY6 N19 N3 N 0 1 N N N N N N 192.484 164.464 181.389 1.130 -0.515 -1.323 N19 A1CY6 37 A1CY6 N30 N4 N 0 1 N N N N N N 194.831 165.925 179.410 -1.640 1.456 0.113 N30 A1CY6 38 A1CY6 N33 N5 N 0 1 N N N N N N 197.035 165.757 179.936 -3.704 0.512 -0.435 N33 A1CY6 39 A1CY6 O11 O1 O 0 1 N N N N N N 188.407 163.134 185.382 3.174 -2.571 0.192 O11 A1CY6 40 A1CY6 O17 O2 O 0 1 N N N N N N 193.603 164.185 184.055 4.551 0.456 -1.262 O17 A1CY6 41 A1CY6 O21 O3 O 0 1 N N N N N N 192.540 166.729 181.326 0.679 1.646 -1.096 O21 A1CY6 42 A1CY6 O32 O4 O 0 1 N N N N N N 195.544 164.286 180.809 -3.544 2.561 0.408 O32 A1CY6 43 A1CY6 O36 O5 O 0 1 N N N N N N 198.496 167.432 181.426 -5.236 -1.675 -0.296 O36 A1CY6 44 A1CY6 O37 O6 O 0 1 N N N N N N 199.653 165.785 182.389 -7.119 -0.609 0.155 O37 A1CY6 45 A1CY6 H1 H1 H 0 1 N N N N N N 194.413 165.551 184.809 1.813 2.152 0.935 H1 A1CY6 46 A1CY6 H2 H2 H 0 1 N N N N N N 194.167 168.488 187.907 5.963 2.835 1.641 H2 A1CY6 47 A1CY6 H3 H3 H 0 1 N N N N N N 192.054 167.338 185.934 4.726 1.225 2.971 H3 A1CY6 48 A1CY6 H4 H4 H 0 1 N N N N N N 192.383 166.893 187.643 2.993 0.940 2.676 H4 A1CY6 49 A1CY6 H5 H5 H 0 1 N N N N N N 193.035 164.557 186.476 5.227 0.135 0.759 H5 A1CY6 50 A1CY6 H6 H6 H 0 1 N N N N N N 191.505 164.639 188.260 5.081 -1.078 3.049 H6 A1CY6 51 A1CY6 H7 H7 H 0 1 N N N N N N 190.379 165.720 187.372 3.523 -1.712 2.467 H7 A1CY6 52 A1CY6 H8 H8 H 0 1 N N N N N N 189.770 163.201 187.731 6.057 -1.934 0.807 H8 A1CY6 53 A1CY6 H9 H9 H 0 1 N N N N N N 190.918 162.915 186.379 5.628 -3.158 2.026 H9 A1CY6 54 A1CY6 H10 H10 H 0 1 N N N N N N 188.561 166.824 184.186 2.708 -4.761 -0.725 H10 A1CY6 55 A1CY6 H11 H11 H 0 1 N N N N N N 187.171 166.042 185.013 3.971 -5.686 -1.578 H11 A1CY6 56 A1CY6 H12 H12 H 0 1 N N N N N N 187.555 165.604 182.483 4.512 -3.227 -2.565 H12 A1CY6 57 A1CY6 H13 H13 H 0 1 N N N N N N 187.156 164.226 183.565 3.321 -4.311 -3.323 H13 A1CY6 58 A1CY6 H14 H14 H 0 1 N N N N N N 191.388 163.271 182.634 2.298 0.670 -2.601 H14 A1CY6 59 A1CY6 H15 H15 H 0 1 N N N N N N 193.406 164.437 179.167 -1.608 -0.380 -0.901 H15 A1CY6 60 A1CY6 H16 H16 H 0 1 N N N N N N 193.043 166.078 177.400 -0.172 -1.519 0.794 H16 A1CY6 61 A1CY6 H17 H17 H 0 1 N N N N N N 192.655 167.336 178.623 -0.113 -0.009 1.734 H17 A1CY6 62 A1CY6 H18 H18 H 0 1 N N N N N N 190.439 167.599 179.345 -2.335 -2.687 0.474 H18 A1CY6 63 A1CY6 H19 H19 H 0 1 N N N N N N 188.085 166.892 179.317 -4.482 -3.264 1.533 H19 A1CY6 64 A1CY6 H20 H20 H 0 1 N N N N N N 187.457 164.724 178.352 -5.375 -1.859 3.348 H20 A1CY6 65 A1CY6 H21 H21 H 0 1 N N N N N N 191.542 163.954 177.422 -1.971 0.692 3.050 H21 A1CY6 66 A1CY6 H22 H22 H 0 1 N N N N N N 189.184 163.261 177.403 -4.120 0.119 4.106 H22 A1CY6 67 A1CY6 H23 H23 H 0 1 N N N N N N 197.825 164.378 181.293 -5.521 1.469 -0.008 H23 A1CY6 68 A1CY6 H24 H24 H 0 1 N N N N N N 200.940 166.261 183.966 -7.160 -2.329 1.335 H24 A1CY6 69 A1CY6 H25 H25 H 0 1 N N N N N N 200.779 167.519 182.694 -8.752 -1.726 0.815 H25 A1CY6 70 A1CY6 H26 H26 H 0 1 N N N N N N 199.444 167.249 183.865 -7.689 -2.551 -0.350 H26 A1CY6 71 A1CY6 H27 H27 H 0 1 N N N N N N 198.671 163.890 179.009 -5.006 0.186 -2.728 H27 A1CY6 72 A1CY6 H28 H28 H 0 1 N N N N N N 199.003 166.221 178.255 -7.154 1.245 -3.372 H28 A1CY6 73 A1CY6 H29 H29 H 0 1 N N N N N N 200.388 166.379 179.388 -7.391 0.062 -2.063 H29 A1CY6 74 A1CY6 H30 H30 H 0 1 N N N N N N 200.470 165.210 178.027 -7.379 1.804 -1.697 H30 A1CY6 75 A1CY6 H31 H31 H 0 1 N N N N N N 199.833 163.054 181.025 -3.730 2.245 -2.407 H31 A1CY6 76 A1CY6 H32 H32 H 0 1 N N N N N N 200.958 163.348 179.656 -5.106 2.586 -3.483 H32 A1CY6 77 A1CY6 H33 H33 H 0 1 N N N N N N 200.875 164.517 181.017 -5.169 3.079 -1.774 H33 A1CY6 78 A1CY6 H34 H34 H 0 1 N N N N N N 190.423 165.940 183.249 2.246 -1.356 -3.815 H34 A1CY6 79 A1CY6 H35 H35 H 0 1 N N N N N N 190.270 165.518 181.510 3.867 -1.370 -3.078 H35 A1CY6 80 A1CY6 H36 H36 H 0 1 N N N N N N 188.914 163.686 181.930 1.509 -3.101 -2.530 H36 A1CY6 81 A1CY6 H37 H37 H 0 1 N N N N N N 189.465 163.540 183.634 2.383 -2.536 -1.086 H37 A1CY6 82 A1CY6 H38 H38 H 0 1 N N N N N N 197.864 167.799 185.891 3.734 5.571 -0.752 H38 A1CY6 83 A1CY6 H39 H39 H 0 1 N N N N N N 196.542 168.999 187.593 5.860 4.885 0.283 H39 A1CY6 84 A1CY6 H40 H40 H 0 1 N N N N N N 189.665 165.921 185.971 5.571 -4.560 -0.177 H40 A1CY6 85 A1CY6 H41 H41 H 0 1 N N N N N N 190.811 165.446 184.703 2.346 -0.682 0.631 H41 A1CY6 86 A1CY6 H42 H42 H 0 1 N N N N N N 192.812 163.628 180.949 0.857 -1.434 -1.178 H42 A1CY6 87 A1CY6 H43 H43 H 0 1 N N N N N N 195.086 166.724 178.865 -1.116 2.223 0.391 H43 A1CY6 88 A1CY6 H44 H44 H 0 1 N N N N N N 197.178 166.529 179.317 -3.266 -0.326 -0.649 H44 A1CY6 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CY6 C29 C28 DOUB Y N 1 A1CY6 C29 C27 SING Y N 2 A1CY6 C28 C24 SING Y N 3 A1CY6 C27 C26 DOUB Y N 4 A1CY6 C24 C23 SING N N 5 A1CY6 C24 C25 DOUB Y N 6 A1CY6 C23 C22 SING N N 7 A1CY6 C40 C39 SING N N 8 A1CY6 C26 C25 SING Y N 9 A1CY6 N30 C22 SING N N 10 A1CY6 N30 C31 SING N N 11 A1CY6 C22 C20 SING N N 12 A1CY6 C39 C41 SING N N 13 A1CY6 C39 C34 SING N N 14 A1CY6 N33 C31 SING N N 15 A1CY6 N33 C34 SING N N 16 A1CY6 C31 O32 DOUB N N 17 A1CY6 C34 C35 SING N N 18 A1CY6 C20 O21 DOUB N N 19 A1CY6 C20 N19 SING N N 20 A1CY6 N19 C18 SING N N 21 A1CY6 O36 C35 DOUB N N 22 A1CY6 C35 O37 SING N N 23 A1CY6 O37 C38 SING N N 24 A1CY6 C42 C18 SING N N 25 A1CY6 C42 C43 SING N N 26 A1CY6 C18 C16 SING N N 27 A1CY6 C43 C14 SING N N 28 A1CY6 C14 C13 SING N N 29 A1CY6 C16 O17 DOUB N N 30 A1CY6 C16 N15 SING N N 31 A1CY6 F01 C02 SING N N 32 A1CY6 C13 N12 SING N N 33 A1CY6 N15 C07 SING N N 34 A1CY6 C02 C03 DOUB Y N 35 A1CY6 C02 C44 SING Y N 36 A1CY6 O11 C10 DOUB N N 37 A1CY6 C03 C04 SING Y N 38 A1CY6 N12 C10 SING N N 39 A1CY6 C10 C09 SING N N 40 A1CY6 C44 C45 DOUB Y N 41 A1CY6 C07 C06 SING N N 42 A1CY6 C07 C08 SING N N 43 A1CY6 C04 C06 SING N N 44 A1CY6 C04 C05 DOUB Y N 45 A1CY6 C09 C08 SING N N 46 A1CY6 C45 C05 SING Y N 47 A1CY6 C03 H1 SING N N 48 A1CY6 C05 H2 SING N N 49 A1CY6 C06 H3 SING N N 50 A1CY6 C06 H4 SING N N 51 A1CY6 C07 H5 SING N N 52 A1CY6 C08 H6 SING N N 53 A1CY6 C08 H7 SING N N 54 A1CY6 C09 H8 SING N N 55 A1CY6 C09 H9 SING N N 56 A1CY6 C13 H10 SING N N 57 A1CY6 C13 H11 SING N N 58 A1CY6 C14 H12 SING N N 59 A1CY6 C14 H13 SING N N 60 A1CY6 C18 H14 SING N N 61 A1CY6 C22 H15 SING N N 62 A1CY6 C23 H16 SING N N 63 A1CY6 C23 H17 SING N N 64 A1CY6 C25 H18 SING N N 65 A1CY6 C26 H19 SING N N 66 A1CY6 C27 H20 SING N N 67 A1CY6 C28 H21 SING N N 68 A1CY6 C29 H22 SING N N 69 A1CY6 C34 H23 SING N N 70 A1CY6 C38 H24 SING N N 71 A1CY6 C38 H25 SING N N 72 A1CY6 C38 H26 SING N N 73 A1CY6 C39 H27 SING N N 74 A1CY6 C40 H28 SING N N 75 A1CY6 C40 H29 SING N N 76 A1CY6 C40 H30 SING N N 77 A1CY6 C41 H31 SING N N 78 A1CY6 C41 H32 SING N N 79 A1CY6 C41 H33 SING N N 80 A1CY6 C42 H34 SING N N 81 A1CY6 C42 H35 SING N N 82 A1CY6 C43 H36 SING N N 83 A1CY6 C43 H37 SING N N 84 A1CY6 C44 H38 SING N N 85 A1CY6 C45 H39 SING N N 86 A1CY6 N12 H40 SING N N 87 A1CY6 N15 H41 SING N N 88 A1CY6 N19 H42 SING N N 89 A1CY6 N30 H43 SING N N 90 A1CY6 N33 H44 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CY6 SMILES ACDLabs 14.52 "O=C(OC)C(NC(=O)NC(Cc1ccccc1)C(=O)NC1CCCCNC(=O)CCC(Cc2cccc(F)c2)NC1=O)C(C)C" A1CY6 InChI InChI 1.06 "InChI=1S/C33H44FN5O6/c1-21(2)29(32(43)45-3)39-33(44)38-27(20-22-10-5-4-6-11-22)31(42)37-26-14-7-8-17-35-28(40)16-15-25(36-30(26)41)19-23-12-9-13-24(34)18-23/h4-6,9-13,18,21,25-27,29H,7-8,14-17,19-20H2,1-3H3,(H,35,40)(H,36,41)(H,37,42)(H2,38,39,44)/t25-,26-,27-,29+/m1/s1" A1CY6 InChIKey InChI 1.06 JXWBMCOYNYABKK-GKWDUZDBSA-N A1CY6 SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H](NC(=O)N[C@H](Cc1ccccc1)C(=O)N[C@@H]2CCCCNC(=O)CC[C@H](Cc3cccc(F)c3)NC2=O)C(C)C" A1CY6 SMILES CACTVS 3.385 "COC(=O)[CH](NC(=O)N[CH](Cc1ccccc1)C(=O)N[CH]2CCCCNC(=O)CC[CH](Cc3cccc(F)c3)NC2=O)C(C)C" A1CY6 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@@H](C(=O)OC)NC(=O)N[C@H](Cc1ccccc1)C(=O)N[C@@H]2CCCCNC(=O)CC[C@@H](NC2=O)Cc3cccc(c3)F" A1CY6 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(C(=O)OC)NC(=O)NC(Cc1ccccc1)C(=O)NC2CCCCNC(=O)CCC(NC2=O)Cc3cccc(c3)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CY6 "SYSTEMATIC NAME" ACDLabs 14.52 "methyl N-{[(2R)-1-({(5R,8R)-5-[(3-fluorophenyl)methyl]-2,7-dioxo-1,6-diazacyclododecan-8-yl}amino)-1-oxo-3-phenylpropan-2-yl]carbamoyl}-L-valinate" A1CY6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "methyl (2~{S})-2-[[(2~{R})-1-[[(5~{R},8~{R})-5-[(3-fluorophenyl)methyl]-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]carbamoylamino]-3-methyl-butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CY6 "Create component" 2025-10-23 RCSB A1CY6 "Modify PCM" 2025-10-23 RCSB A1CY6 "Initial release" 2026-04-15 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1CY6 _pdbx_chem_comp_pcm.modified_residue_id THR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C08 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #