data_A1CYO # _chem_comp.id A1CYO _chem_comp.name "N-(2,6-difluorobenzoyl)-4-[4-(ethoxymethyl)-2,6-dimethoxyphenyl]-L-phenylalanine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 F2 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9YO2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CYO C16 C1 C 0 1 N N N N N N 0.143 -20.189 -14.036 2.590 2.880 0.332 C16 A1CYO 1 A1CYO C11 C2 C 0 1 Y N N N N N 2.828 -23.554 -19.056 3.153 -3.803 0.569 C11 A1CYO 2 A1CYO C12 C3 C 0 1 Y N N N N N 2.420 -23.130 -20.309 4.398 -4.215 1.008 C12 A1CYO 3 A1CYO C13 C4 C 0 1 Y N N N N N 1.189 -22.511 -20.459 5.495 -3.382 0.884 C13 A1CYO 4 A1CYO C14 C5 C 0 1 Y N N N N N 0.366 -22.319 -19.356 5.355 -2.129 0.318 C14 A1CYO 5 A1CYO C19 C6 C 0 1 Y N N N N N 2.163 -22.757 -12.059 -0.393 0.813 1.368 C19 A1CYO 6 A1CYO C02 C7 C 0 1 N N N N N N -2.037 -19.994 -15.287 4.839 2.675 -0.691 C02 A1CYO 7 A1CYO C04 C8 C 0 1 N N S N N N -0.822 -20.892 -15.013 3.489 2.020 -0.559 C04 A1CYO 8 A1CYO C06 C9 C 0 1 N N N N N N -0.119 -22.528 -16.855 3.941 -0.368 -0.734 C06 A1CYO 9 A1CYO C08 C10 C 0 1 Y N N N N N 0.761 -22.753 -18.100 4.100 -1.704 -0.129 C08 A1CYO 10 A1CYO C09 C11 C 0 1 Y N N N N N 2.004 -23.360 -17.958 2.995 -2.553 0.001 C09 A1CYO 11 A1CYO C17 C12 C 0 1 Y N N N N N 1.304 -21.073 -13.546 1.204 2.290 0.366 C17 A1CYO 12 A1CYO C18 C13 C 0 1 Y N N N N N 1.112 -21.956 -12.495 0.876 1.356 1.332 C18 A1CYO 13 A1CYO C20 C14 C 0 1 Y N N N N N 3.420 -22.668 -12.648 -1.342 1.204 0.425 C20 A1CYO 14 A1CYO C21 C15 C 0 1 Y N N N N N 3.613 -21.791 -13.715 -1.006 2.146 -0.546 C21 A1CYO 15 A1CYO C22 C16 C 0 1 Y N N N N N 2.553 -20.998 -14.155 0.264 2.686 -0.569 C22 A1CYO 16 A1CYO C23 C17 C 0 1 Y N N N N N 4.524 -23.609 -12.124 -2.704 0.620 0.455 C23 A1CYO 17 A1CYO C24 C18 C 0 1 Y N N N N N 4.958 -23.598 -10.786 -3.810 1.429 0.730 C24 A1CYO 18 A1CYO C26 C19 C 0 1 N N N N N N 5.149 -22.303 -8.709 -4.816 3.520 1.245 C26 A1CYO 19 A1CYO C27 C20 C 0 1 Y N N N N N 5.926 -24.497 -10.371 -5.080 0.875 0.755 C27 A1CYO 20 A1CYO C28 C21 C 0 1 Y N N N N N 6.472 -25.390 -11.257 -5.255 -0.474 0.510 C28 A1CYO 21 A1CYO C29 C22 C 0 1 Y N N N N N 6.047 -25.426 -12.564 -4.166 -1.282 0.237 C29 A1CYO 22 A1CYO C30 C23 C 0 1 Y N N N N N 5.080 -24.539 -13.012 -2.890 -0.742 0.202 C30 A1CYO 23 A1CYO C32 C24 C 0 1 N N N N N N 5.391 -25.160 -15.383 -2.087 -2.921 -0.304 C32 A1CYO 24 A1CYO C33 C25 C 0 1 N N N N N N 7.519 -26.380 -10.760 -6.640 -1.068 0.540 C33 A1CYO 25 A1CYO C35 C26 C 0 1 N N N N N N 5.858 -28.111 -10.444 -8.537 -1.539 -0.846 C35 A1CYO 26 A1CYO C36 C27 C 0 1 N N N N N N 4.976 -28.758 -11.515 -9.053 -1.412 -2.281 C36 A1CYO 27 A1CYO F10 F1 F 0 1 N N N N N N 2.428 -23.790 -16.740 1.780 -2.154 -0.432 F10 A1CYO 28 A1CYO F15 F2 F 0 1 N N N N N N -0.838 -21.711 -19.525 6.428 -1.317 0.198 F15 A1CYO 29 A1CYO N05 N1 N 0 1 N N N N N N -0.066 -21.214 -16.220 3.646 0.693 0.043 N05 A1CYO 30 A1CYO O01 O1 O 0 1 N N N N N N -2.857 -19.738 -14.363 4.940 3.905 -1.220 O01 A1CYO 31 A1CYO O03 O2 O 0 1 N N N N N N -2.186 -19.481 -16.431 5.832 2.093 -0.322 O03 A1CYO 32 A1CYO O07 O3 O 0 1 N N N N N N -0.810 -23.382 -16.397 4.076 -0.224 -1.934 O07 A1CYO 33 A1CYO O25 O4 O 0 1 N N N N N N 4.428 -22.707 -9.850 -3.640 2.755 0.972 O25 A1CYO 34 A1CYO O31 O5 O 0 1 N N N N N N 4.644 -24.570 -14.345 -1.822 -1.537 -0.067 O31 A1CYO 35 A1CYO O34 O6 O 0 1 N N N N N N 7.045 -27.667 -11.060 -7.217 -0.999 -0.765 O34 A1CYO 36 A1CYO H161 H1 H 0 0 N N N N N N 0.569 -19.311 -14.544 2.998 2.907 1.342 H161 A1CYO 37 A1CYO H162 H2 H 0 0 N N N N N N -0.434 -19.860 -13.159 2.545 3.893 -0.068 H162 A1CYO 38 A1CYO H111 H3 H 0 0 N N N N N N 3.787 -24.035 -18.934 2.303 -4.462 0.666 H111 A1CYO 39 A1CYO H121 H4 H 0 0 N N N N N N 3.059 -23.281 -21.167 4.514 -5.194 1.451 H121 A1CYO 40 A1CYO H131 H5 H 0 0 N N N N N N 0.869 -22.177 -21.435 6.464 -3.712 1.230 H131 A1CYO 41 A1CYO H191 H6 H 0 0 N N N N N N 2.001 -23.457 -11.253 -0.647 0.083 2.122 H191 A1CYO 42 A1CYO H041 H7 H 0 0 N N N N N N -1.175 -21.822 -14.543 3.035 1.921 -1.544 H041 A1CYO 43 A1CYO H181 H8 H 0 0 N N N N N N 0.147 -22.022 -12.015 1.613 1.051 2.059 H181 A1CYO 44 A1CYO H211 H9 H 0 0 N N N N N N 4.577 -21.726 -14.198 -1.737 2.452 -1.279 H211 A1CYO 45 A1CYO H221 H10 H 0 0 N N N N N N 2.704 -20.317 -14.979 0.525 3.416 -1.320 H221 A1CYO 46 A1CYO H263 H11 H 0 0 N N N N N N 4.540 -21.603 -8.118 -5.493 3.462 0.394 H263 A1CYO 47 A1CYO H262 H12 H 0 0 N N N N N N 5.391 -23.185 -8.097 -5.311 3.122 2.131 H262 A1CYO 48 A1CYO H261 H13 H 0 0 N N N N N N 6.079 -21.806 -9.020 -4.540 4.560 1.421 H261 A1CYO 49 A1CYO H271 H14 H 0 0 N N N N N N 6.253 -24.495 -9.342 -5.936 1.499 0.967 H271 A1CYO 50 A1CYO H291 H15 H 0 0 N N N N N N 6.469 -26.150 -13.246 -4.311 -2.335 0.046 H291 A1CYO 51 A1CYO H322 H16 H 0 0 N N N N N N 4.844 -25.059 -16.332 -2.562 -3.356 0.575 H322 A1CYO 52 A1CYO H321 H17 H 0 0 N N N N N N 6.365 -24.656 -15.466 -2.750 -3.022 -1.163 H321 A1CYO 53 A1CYO H323 H18 H 0 0 N N N N N N 5.547 -26.226 -15.162 -1.150 -3.441 -0.505 H323 A1CYO 54 A1CYO H331 H19 H 0 0 N N N N N N 8.478 -26.203 -11.269 -6.581 -2.110 0.857 H331 A1CYO 55 A1CYO H332 H20 H 0 0 N N N N N N 7.655 -26.272 -9.674 -7.259 -0.510 1.242 H332 A1CYO 56 A1CYO H351 H21 H 0 0 N N N N N N 5.331 -27.257 -9.993 -9.196 -0.990 -0.174 H351 A1CYO 57 A1CYO H352 H22 H 0 0 N N N N N N 6.097 -28.848 -9.663 -8.518 -2.590 -0.559 H352 A1CYO 58 A1CYO H362 H23 H 0 0 N N N N N N 4.042 -29.113 -11.056 -10.060 -1.824 -2.343 H362 A1CYO 59 A1CYO H363 H24 H 0 0 N N N N N N 4.743 -28.018 -12.295 -9.071 -0.361 -2.569 H363 A1CYO 60 A1CYO H361 H25 H 0 0 N N N N N N 5.510 -29.608 -11.965 -8.394 -1.961 -2.954 H361 A1CYO 61 A1CYO H051 H26 H 0 0 N N N N N N 0.511 -20.507 -16.628 3.539 0.579 1.000 H051 A1CYO 62 A1CYO H1 H27 H 0 1 N N N N N N -3.526 -19.146 -14.687 5.827 4.283 -1.285 H1 A1CYO 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CYO C13 C12 DOUB Y N 1 A1CYO C13 C14 SING Y N 2 A1CYO C12 C11 SING Y N 3 A1CYO F15 C14 SING N N 4 A1CYO C14 C08 DOUB Y N 5 A1CYO C11 C09 DOUB Y N 6 A1CYO C08 C09 SING Y N 7 A1CYO C08 C06 SING N N 8 A1CYO C09 F10 SING N N 9 A1CYO C06 O07 DOUB N N 10 A1CYO C06 N05 SING N N 11 A1CYO O03 C02 DOUB N N 12 A1CYO N05 C04 SING N N 13 A1CYO C32 O31 SING N N 14 A1CYO C02 C04 SING N N 15 A1CYO C02 O01 SING N N 16 A1CYO C04 C16 SING N N 17 A1CYO O31 C30 SING N N 18 A1CYO C22 C21 DOUB Y N 19 A1CYO C22 C17 SING Y N 20 A1CYO C16 C17 SING N N 21 A1CYO C21 C20 SING Y N 22 A1CYO C17 C18 DOUB Y N 23 A1CYO C30 C29 DOUB Y N 24 A1CYO C30 C23 SING Y N 25 A1CYO C20 C23 SING N N 26 A1CYO C20 C19 DOUB Y N 27 A1CYO C29 C28 SING Y N 28 A1CYO C18 C19 SING Y N 29 A1CYO C23 C24 DOUB Y N 30 A1CYO C36 C35 SING N N 31 A1CYO C28 C33 SING N N 32 A1CYO C28 C27 DOUB Y N 33 A1CYO O34 C33 SING N N 34 A1CYO O34 C35 SING N N 35 A1CYO C24 C27 SING Y N 36 A1CYO C24 O25 SING N N 37 A1CYO O25 C26 SING N N 38 A1CYO C16 H161 SING N N 39 A1CYO C16 H162 SING N N 40 A1CYO C11 H111 SING N N 41 A1CYO C12 H121 SING N N 42 A1CYO C13 H131 SING N N 43 A1CYO C19 H191 SING N N 44 A1CYO C04 H041 SING N N 45 A1CYO C18 H181 SING N N 46 A1CYO C21 H211 SING N N 47 A1CYO C22 H221 SING N N 48 A1CYO C26 H263 SING N N 49 A1CYO C26 H262 SING N N 50 A1CYO C26 H261 SING N N 51 A1CYO C27 H271 SING N N 52 A1CYO C29 H291 SING N N 53 A1CYO C32 H322 SING N N 54 A1CYO C32 H321 SING N N 55 A1CYO C32 H323 SING N N 56 A1CYO C33 H331 SING N N 57 A1CYO C33 H332 SING N N 58 A1CYO C35 H351 SING N N 59 A1CYO C35 H352 SING N N 60 A1CYO C36 H362 SING N N 61 A1CYO C36 H363 SING N N 62 A1CYO C36 H361 SING N N 63 A1CYO N05 H051 SING N N 64 A1CYO O01 H1 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CYO SMILES ACDLabs 14.52 "COc1cc(cc(OC)c1c1ccc(CC(NC(=O)c2c(F)cccc2F)C(=O)O)cc1)COCC" A1CYO InChI InChI 1.06 "InChI=1S/C27H27F2NO6/c1-4-36-15-17-13-22(34-2)24(23(14-17)35-3)18-10-8-16(9-11-18)12-21(27(32)33)30-26(31)25-19(28)6-5-7-20(25)29/h5-11,13-14,21H,4,12,15H2,1-3H3,(H,30,31)(H,32,33)/t21-/m0/s1" A1CYO InChIKey InChI 1.06 YLFZHHDVRSYTKT-NRFANRHFSA-N A1CYO SMILES_CANONICAL CACTVS 3.385 "CCOCc1cc(OC)c(c(OC)c1)c2ccc(C[C@H](NC(=O)c3c(F)cccc3F)C(O)=O)cc2" A1CYO SMILES CACTVS 3.385 "CCOCc1cc(OC)c(c(OC)c1)c2ccc(C[CH](NC(=O)c3c(F)cccc3F)C(O)=O)cc2" A1CYO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCOCc1cc(c(c(c1)OC)c2ccc(cc2)C[C@@H](C(=O)O)NC(=O)c3c(cccc3F)F)OC" A1CYO SMILES "OpenEye OEToolkits" 3.1.0.0 "CCOCc1cc(c(c(c1)OC)c2ccc(cc2)CC(C(=O)O)NC(=O)c3c(cccc3F)F)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CYO "SYSTEMATIC NAME" ACDLabs 14.52 "N-(2,6-difluorobenzoyl)-4-[4-(ethoxymethyl)-2,6-dimethoxyphenyl]-L-phenylalanine" A1CYO "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-[[2,6-bis(fluoranyl)phenyl]carbonylamino]-3-[4-[4-(ethoxymethyl)-2,6-dimethoxy-phenyl]phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CYO "Create component" 2025-10-14 RCSB A1CYO "Initial release" 2026-10-21 RCSB #