data_A1CYR # _chem_comp.id A1CYR _chem_comp.name "(2S)-(2,6-difluorobenzamido)(4-hydroxy-1-{[(2S)-1-({4-[(2-methylphenyl)carbamamido]phenyl}acetyl)pyrrolidin-2-yl]methyl}piperidin-4-yl)acetic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H39 F2 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-14 _chem_comp.pdbx_modified_date 2026-10-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 663.711 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CYR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9YO4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CYR C02 C1 C 0 1 N N N N N N -0.111 -21.743 -13.858 3.983 0.671 1.336 C02 A1CYR 1 A1CYR C03 C2 C 0 1 N N S N N N -1.123 -21.415 -15.032 5.450 0.236 1.363 C03 A1CYR 2 A1CYR C05 C3 C 0 1 N N N N N N -0.470 -22.699 -17.125 6.855 -1.206 -0.010 C05 A1CYR 3 A1CYR C06 C4 C 0 1 Y N N N N N 0.314 -22.734 -18.436 7.021 -2.301 -0.985 C06 A1CYR 4 A1CYR C07 C5 C 0 1 Y N N N N N 1.374 -23.612 -18.564 7.382 -3.581 -0.551 C07 A1CYR 5 A1CYR C09 C6 C 0 1 Y N N N N N 2.103 -23.654 -19.739 7.534 -4.601 -1.471 C09 A1CYR 6 A1CYR C10 C7 C 0 1 Y N N N N N 1.766 -22.819 -20.787 7.331 -4.359 -2.818 C10 A1CYR 7 A1CYR C11 C8 C 0 1 Y N N N N N 0.695 -21.937 -20.650 6.974 -3.096 -3.256 C11 A1CYR 8 A1CYR C12 C9 C 0 1 Y N N N N N -0.012 -21.899 -19.475 6.812 -2.066 -2.349 C12 A1CYR 9 A1CYR C15 C10 C 0 1 N N N N N N -1.760 -20.040 -14.893 5.836 -0.141 2.770 C15 A1CYR 10 A1CYR C18 C11 C 0 1 N N N N N N 1.009 -20.729 -13.844 3.556 0.939 -0.110 C18 A1CYR 11 A1CYR C19 C12 C 0 1 N N N N N N 2.130 -21.122 -12.866 2.106 1.431 -0.125 C19 A1CYR 12 A1CYR C21 C13 C 0 1 N N N N N N 3.642 -22.884 -12.087 0.649 3.235 0.569 C21 A1CYR 13 A1CYR C22 C14 C 0 1 N N S N N N 5.048 -22.482 -12.553 0.393 3.675 -0.874 C22 A1CYR 14 A1CYR C23 C15 C 0 1 N N N N N N 5.740 -23.578 -13.459 1.340 4.836 -1.245 C23 A1CYR 15 A1CYR C24 C16 C 0 1 N N N N N N 6.315 -24.569 -12.424 0.440 5.755 -2.112 C24 A1CYR 16 A1CYR C25 C17 C 0 1 N N N N N N 6.544 -23.834 -11.274 -0.935 5.589 -1.418 C25 A1CYR 17 A1CYR C27 C18 C 0 1 N N N N N N 5.904 -21.261 -10.548 -2.103 3.456 -0.794 C27 A1CYR 18 A1CYR C28 C19 C 0 1 N N N N N N 6.774 -21.345 -9.314 -3.453 4.063 -1.078 C28 A1CYR 19 A1CYR C29 C20 C 0 1 Y N N N N N 6.520 -20.175 -8.360 -4.535 3.109 -0.641 C29 A1CYR 20 A1CYR C30 C21 C 0 1 Y N N N N N 6.941 -18.899 -8.715 -4.954 2.104 -1.493 C30 A1CYR 21 A1CYR C31 C22 C 0 1 Y N N N N N 6.735 -17.829 -7.872 -5.945 1.228 -1.095 C31 A1CYR 22 A1CYR C32 C23 C 0 1 Y N N N N N 6.111 -18.022 -6.672 -6.521 1.358 0.162 C32 A1CYR 23 A1CYR C34 C24 C 0 1 N N N N N N 4.685 -16.579 -5.089 -7.480 -0.819 0.186 C34 A1CYR 24 A1CYR C36 C25 C 0 1 Y N N N N N 3.550 -14.914 -3.525 -8.283 -3.053 0.343 C36 A1CYR 25 A1CYR C37 C26 C 0 1 Y N N N N N 2.810 -15.777 -2.715 -7.072 -3.575 -0.092 C37 A1CYR 26 A1CYR C38 C27 C 0 1 Y N N N N N 1.741 -15.296 -1.993 -6.970 -4.917 -0.401 C38 A1CYR 27 A1CYR C39 C28 C 0 1 Y N N N N N 1.399 -13.950 -2.073 -8.074 -5.742 -0.278 C39 A1CYR 28 A1CYR C40 C29 C 0 1 Y N N N N N 2.132 -13.080 -2.871 -9.281 -5.226 0.154 C40 A1CYR 29 A1CYR C41 C30 C 0 1 Y N N N N N 3.225 -13.575 -3.592 -9.389 -3.884 0.465 C41 A1CYR 30 A1CYR C42 C31 C 0 1 N N N N N N 4.060 -12.655 -4.481 -10.706 -3.322 0.937 C42 A1CYR 31 A1CYR C44 C32 C 0 1 Y N N N N N 5.678 -19.295 -6.280 -6.097 2.368 1.016 C44 A1CYR 32 A1CYR C45 C33 C 0 1 Y N N N N N 5.889 -20.370 -7.137 -5.102 3.237 0.614 C45 A1CYR 33 A1CYR C47 C34 C 0 1 N N N N N N 1.495 -23.506 -13.024 2.356 2.414 2.076 C47 A1CYR 34 A1CYR C48 C35 C 0 1 N N N N N N 0.408 -23.150 -14.036 3.813 1.952 2.157 C48 A1CYR 35 A1CYR F08 F1 F 0 1 N N N N N N 1.687 -24.440 -17.528 7.581 -3.819 0.764 F08 A1CYR 36 A1CYR F13 F2 F 0 1 N N N N N N -1.060 -21.040 -19.339 6.463 -0.834 -2.778 F13 A1CYR 37 A1CYR N04 N1 N 0 1 N N N N N N -0.417 -21.494 -16.297 5.633 -0.919 0.480 N04 A1CYR 38 A1CYR N20 N2 N 0 1 N N N N N N 2.650 -22.522 -13.121 1.996 2.658 0.673 N20 A1CYR 39 A1CYR N26 N3 N 0 1 N N N N N N 5.808 -22.413 -11.452 -0.983 4.174 -1.008 N26 A1CYR 40 A1CYR N33 N4 N 0 1 N N N N N N 5.930 -16.876 -5.798 -7.525 0.472 0.568 N33 A1CYR 41 A1CYR N35 N5 N 0 1 N N N N N N 4.666 -15.396 -4.280 -8.388 -1.695 0.662 N35 A1CYR 42 A1CYR O01 O1 O 0 1 N N N N N N -0.806 -21.670 -12.644 3.168 -0.364 1.891 O01 A1CYR 43 A1CYR O14 O2 O 0 1 N N N N N N -1.120 -23.629 -16.782 7.821 -0.562 0.351 O14 A1CYR 44 A1CYR O16 O3 O 0 1 N N N N N N -1.787 -19.300 -15.900 6.225 -1.259 3.011 O16 A1CYR 45 A1CYR O17 O4 O 0 1 N N N N N N -2.217 -19.649 -13.789 5.749 0.766 3.755 O17 A1CYR 46 A1CYR O43 O5 O 0 1 N N N N N N 3.752 -17.262 -5.174 -6.621 -1.195 -0.587 O43 A1CYR 47 A1CYR O46 O6 O 0 1 N N N N N N 5.297 -20.262 -10.777 -2.025 2.322 -0.371 O46 A1CYR 48 A1CYR H031 H1 H 0 0 N N N N N N -1.920 -22.173 -15.009 6.079 1.058 1.020 H031 A1CYR 49 A1CYR H091 H2 H 0 0 N N N N N N 2.933 -24.338 -19.837 7.813 -5.589 -1.138 H091 A1CYR 50 A1CYR H101 H3 H 0 0 N N N N N N 2.330 -22.849 -21.708 7.456 -5.159 -3.532 H101 A1CYR 51 A1CYR H111 H4 H 0 0 N N N N N N 0.423 -21.285 -21.467 6.817 -2.916 -4.309 H111 A1CYR 52 A1CYR H182 H5 H 0 0 N N N N N N 1.432 -20.653 -14.857 4.202 1.701 -0.545 H182 A1CYR 53 A1CYR H181 H6 H 0 0 N N N N N N 0.601 -19.753 -13.543 3.634 0.020 -0.689 H181 A1CYR 54 A1CYR H192 H7 H 0 0 N N N N N N 2.961 -20.410 -12.976 1.803 1.637 -1.151 H192 A1CYR 55 A1CYR H191 H8 H 0 0 N N N N N N 1.738 -21.072 -11.840 1.458 0.663 0.298 H191 A1CYR 56 A1CYR H211 H9 H 0 0 N N N N N N 3.403 -22.358 -11.151 0.571 4.098 1.230 H211 A1CYR 57 A1CYR H212 H10 H 0 0 N N N N N N 3.611 -23.970 -11.915 -0.090 2.488 0.857 H212 A1CYR 58 A1CYR H221 H11 H 0 0 N N N N N N 5.003 -21.531 -13.104 0.551 2.835 -1.551 H221 A1CYR 59 A1CYR H232 H12 H 0 0 N N N N N N 5.006 -24.071 -14.114 1.676 5.360 -0.350 H232 A1CYR 60 A1CYR H231 H13 H 0 0 N N N N N N 6.540 -23.137 -14.072 2.189 4.472 -1.822 H231 A1CYR 61 A1CYR H241 H14 H 0 0 N N N N N N 5.593 -25.374 -12.225 0.779 6.790 -2.067 H241 A1CYR 62 A1CYR H242 H15 H 0 0 N N N N N N 7.256 -25.003 -12.793 0.401 5.403 -3.143 H242 A1CYR 63 A1CYR H251 H16 H 0 0 N N N N N N 6.132 -24.363 -10.402 -0.999 6.239 -0.545 H251 A1CYR 64 A1CYR H252 H17 H 0 0 N N N N N N 7.625 -23.682 -11.134 -1.742 5.812 -2.115 H252 A1CYR 65 A1CYR H281 H18 H 0 0 N N N N N N 6.557 -22.287 -8.789 -3.553 5.000 -0.531 H281 A1CYR 66 A1CYR H282 H19 H 0 0 N N N N N N 7.830 -21.331 -9.621 -3.548 4.254 -2.147 H282 A1CYR 67 A1CYR H301 H20 H 0 0 N N N N N N 7.435 -18.744 -9.663 -4.506 2.004 -2.470 H301 A1CYR 68 A1CYR H311 H21 H 0 0 N N N N N N 7.065 -16.842 -8.159 -6.273 0.443 -1.761 H311 A1CYR 69 A1CYR H371 H22 H 0 0 N N N N N N 3.076 -16.822 -2.655 -6.210 -2.932 -0.189 H371 A1CYR 70 A1CYR H381 H23 H 0 0 N N N N N N 1.169 -15.963 -1.365 -6.029 -5.323 -0.739 H381 A1CYR 71 A1CYR H391 H24 H 0 0 N N N N N N 0.556 -13.578 -1.510 -7.992 -6.791 -0.521 H391 A1CYR 72 A1CYR H401 H25 H 0 0 N N N N N N 1.862 -12.036 -2.934 -10.142 -5.872 0.249 H401 A1CYR 73 A1CYR H423 H26 H 0 0 N N N N N N 3.631 -12.635 -5.494 -11.284 -2.983 0.078 H423 A1CYR 74 A1CYR H422 H27 H 0 0 N N N N N N 4.057 -11.638 -4.062 -11.262 -4.096 1.467 H422 A1CYR 75 A1CYR H421 H28 H 0 0 N N N N N N 5.093 -13.029 -4.528 -10.523 -2.482 1.607 H421 A1CYR 76 A1CYR H441 H29 H 0 0 N N N N N N 5.188 -19.439 -5.328 -6.543 2.472 1.994 H441 A1CYR 77 A1CYR H451 H30 H 0 0 N N N N N N 5.562 -21.359 -6.851 -4.769 4.020 1.279 H451 A1CYR 78 A1CYR H472 H31 H 0 0 N N N N N N 1.072 -23.470 -12.009 1.707 1.642 2.488 H472 A1CYR 79 A1CYR H471 H32 H 0 0 N N N N N N 1.865 -24.521 -13.231 2.235 3.334 2.647 H471 A1CYR 80 A1CYR H482 H33 H 0 0 N N N N N N -0.430 -23.853 -13.915 4.075 1.756 3.196 H482 A1CYR 81 A1CYR H481 H34 H 0 0 N N N N N N 0.825 -23.247 -15.049 4.464 2.729 1.757 H481 A1CYR 82 A1CYR H041 H35 H 0 0 N N N N N N 0.117 -20.708 -16.609 4.874 -1.478 0.249 H041 A1CYR 83 A1CYR H331 H37 H 0 0 N N N N N N 6.702 -16.253 -5.673 -8.255 0.788 1.125 H331 A1CYR 84 A1CYR H351 H38 H 0 0 N N N N N N 5.509 -14.859 -4.240 -9.113 -1.384 1.225 H351 A1CYR 85 A1CYR H011 H39 H 0 0 N N N N N N -0.214 -21.864 -11.927 3.384 -0.586 2.806 H011 A1CYR 86 A1CYR H2 H40 H 0 1 N N N N N N -2.551 -18.764 -13.879 6.008 0.478 4.641 H2 A1CYR 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CYR C10 C11 DOUB Y N 1 A1CYR C10 C09 SING Y N 2 A1CYR C11 C12 SING Y N 3 A1CYR C09 C07 DOUB Y N 4 A1CYR C12 F13 SING N N 5 A1CYR C12 C06 DOUB Y N 6 A1CYR C07 C06 SING Y N 7 A1CYR C07 F08 SING N N 8 A1CYR C06 C05 SING N N 9 A1CYR C05 O14 DOUB N N 10 A1CYR C05 N04 SING N N 11 A1CYR N04 C03 SING N N 12 A1CYR O16 C15 DOUB N N 13 A1CYR C03 C15 SING N N 14 A1CYR C03 C02 SING N N 15 A1CYR C15 O17 SING N N 16 A1CYR C48 C02 SING N N 17 A1CYR C48 C47 SING N N 18 A1CYR C02 C18 SING N N 19 A1CYR C02 O01 SING N N 20 A1CYR C18 C19 SING N N 21 A1CYR C23 C22 SING N N 22 A1CYR C23 C24 SING N N 23 A1CYR N20 C47 SING N N 24 A1CYR N20 C19 SING N N 25 A1CYR N20 C21 SING N N 26 A1CYR C22 C21 SING N N 27 A1CYR C22 N26 SING N N 28 A1CYR C24 C25 SING N N 29 A1CYR N26 C25 SING N N 30 A1CYR N26 C27 SING N N 31 A1CYR O46 C27 DOUB N N 32 A1CYR C27 C28 SING N N 33 A1CYR C28 C29 SING N N 34 A1CYR C30 C29 DOUB Y N 35 A1CYR C30 C31 SING Y N 36 A1CYR C29 C45 SING Y N 37 A1CYR C31 C32 DOUB Y N 38 A1CYR C45 C44 DOUB Y N 39 A1CYR C32 C44 SING Y N 40 A1CYR C32 N33 SING N N 41 A1CYR N33 C34 SING N N 42 A1CYR O43 C34 DOUB N N 43 A1CYR C34 N35 SING N N 44 A1CYR C42 C41 SING N N 45 A1CYR N35 C36 SING N N 46 A1CYR C41 C36 DOUB Y N 47 A1CYR C41 C40 SING Y N 48 A1CYR C36 C37 SING Y N 49 A1CYR C40 C39 DOUB Y N 50 A1CYR C37 C38 DOUB Y N 51 A1CYR C39 C38 SING Y N 52 A1CYR C03 H031 SING N N 53 A1CYR C09 H091 SING N N 54 A1CYR C10 H101 SING N N 55 A1CYR C11 H111 SING N N 56 A1CYR C18 H182 SING N N 57 A1CYR C18 H181 SING N N 58 A1CYR C19 H192 SING N N 59 A1CYR C19 H191 SING N N 60 A1CYR C21 H211 SING N N 61 A1CYR C21 H212 SING N N 62 A1CYR C22 H221 SING N N 63 A1CYR C23 H232 SING N N 64 A1CYR C23 H231 SING N N 65 A1CYR C24 H241 SING N N 66 A1CYR C24 H242 SING N N 67 A1CYR C25 H251 SING N N 68 A1CYR C25 H252 SING N N 69 A1CYR C28 H281 SING N N 70 A1CYR C28 H282 SING N N 71 A1CYR C30 H301 SING N N 72 A1CYR C31 H311 SING N N 73 A1CYR C37 H371 SING N N 74 A1CYR C38 H381 SING N N 75 A1CYR C39 H391 SING N N 76 A1CYR C40 H401 SING N N 77 A1CYR C42 H423 SING N N 78 A1CYR C42 H422 SING N N 79 A1CYR C42 H421 SING N N 80 A1CYR C44 H441 SING N N 81 A1CYR C45 H451 SING N N 82 A1CYR C47 H472 SING N N 83 A1CYR C47 H471 SING N N 84 A1CYR C48 H482 SING N N 85 A1CYR C48 H481 SING N N 86 A1CYR N04 H041 SING N N 87 A1CYR N33 H331 SING N N 88 A1CYR N35 H351 SING N N 89 A1CYR O01 H011 SING N N 90 A1CYR O17 H2 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CYR SMILES ACDLabs 14.52 "Cc1ccccc1NC(=O)Nc1ccc(cc1)CC(=O)N1CCCC1CN1CCC(O)(CC1)C(NC(=O)c1c(F)cccc1F)C(=O)O" A1CYR InChI InChI 1.06 "InChI=1S/C35H39F2N5O6/c1-22-6-2-3-10-28(22)39-34(47)38-24-13-11-23(12-14-24)20-29(43)42-17-5-7-25(42)21-41-18-15-35(48,16-19-41)31(33(45)46)40-32(44)30-26(36)8-4-9-27(30)37/h2-4,6,8-14,25,31,48H,5,7,15-21H2,1H3,(H,40,44)(H,45,46)(H2,38,39,47)/t25-,31+/m0/s1" A1CYR InChIKey InChI 1.06 MTKQIGZCFWWMGF-VVFBEHOQSA-N A1CYR SMILES_CANONICAL CACTVS 3.385 "Cc1ccccc1NC(=O)Nc2ccc(CC(=O)N3CCC[C@H]3CN4CCC(O)(CC4)[C@H](NC(=O)c5c(F)cccc5F)C(O)=O)cc2" A1CYR SMILES CACTVS 3.385 "Cc1ccccc1NC(=O)Nc2ccc(CC(=O)N3CCC[CH]3CN4CCC(O)(CC4)[CH](NC(=O)c5c(F)cccc5F)C(O)=O)cc2" A1CYR SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccccc1NC(=O)Nc2ccc(cc2)CC(=O)N3CCC[C@H]3CN4CCC(CC4)([C@@H](C(=O)O)NC(=O)c5c(cccc5F)F)O" A1CYR SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1ccccc1NC(=O)Nc2ccc(cc2)CC(=O)N3CCCC3CN4CCC(CC4)(C(C(=O)O)NC(=O)c5c(cccc5F)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CYR "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-(2,6-difluorobenzamido)(4-hydroxy-1-{[(2S)-1-({4-[(2-methylphenyl)carbamamido]phenyl}acetyl)pyrrolidin-2-yl]methyl}piperidin-4-yl)acetic acid" A1CYR "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-[[2,6-bis(fluoranyl)phenyl]carbonylamino]-2-[1-[[(2~{S})-1-[2-[4-[(2-methylphenyl)carbamoylamino]phenyl]ethanoyl]pyrrolidin-2-yl]methyl]-4-oxidanyl-piperidin-4-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CYR "Create component" 2025-10-14 RCSB A1CYR "Initial release" 2026-10-21 RCSB #