data_A1CZ9 # _chem_comp.id A1CZ9 _chem_comp.name "6'-(2,4-difluorophenoxy)-2'-{2-[2-(2-hydroxypropan-2-yl)pyrimidin-4-yl]-5-methylpyridin-4-yl}spiro[cyclopropane-1,1'-isoindol]-3'(2'H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H24 F2 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-09 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.523 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CZ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Z3M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CZ9 C22 C1 C 0 1 N N N N N N -12.154 -4.785 59.625 0.248 -0.106 -2.138 C22 A1CZ9 1 A1CZ9 C1 C2 C 0 1 N N N N N N -11.127 -3.658 62.448 0.612 3.902 -0.149 C1 A1CZ9 2 A1CZ9 O3 O1 O 0 1 N N N N N N -8.932 -7.286 62.446 0.333 1.138 2.447 O3 A1CZ9 3 A1CZ9 N1 N1 N 0 1 Y N N N N N -13.654 -5.739 64.351 4.185 2.868 -0.306 N1 A1CZ9 4 A1CZ9 C2 C3 C 0 1 Y N N N N N -11.908 -4.872 62.938 1.848 3.040 -0.146 C2 A1CZ9 5 A1CZ9 C7 C4 C 0 1 Y N N N N N -14.238 -8.063 64.456 5.390 0.759 -0.160 C7 A1CZ9 6 A1CZ9 C6 C5 C 0 1 Y N N N N N -12.908 -4.719 63.900 3.097 3.610 -0.306 C6 A1CZ9 7 A1CZ9 C5 C6 C 0 1 Y N N N N N -13.370 -6.989 63.919 4.134 1.550 -0.153 C5 A1CZ9 8 A1CZ9 C4 C7 C 0 1 Y N N N N N -12.354 -7.247 62.972 2.914 0.903 0.014 C4 A1CZ9 9 A1CZ9 C3 C8 C 0 1 Y N N N N N -11.646 -6.162 62.442 1.745 1.660 0.019 C3 A1CZ9 10 A1CZ9 C11 C9 C 0 1 N N N N N N -13.949 -11.651 65.031 6.393 -2.759 0.180 C11 A1CZ9 11 A1CZ9 C10 C10 C 0 1 Y N N N N N -14.561 -10.259 64.907 6.471 -1.265 -0.002 C10 A1CZ9 12 A1CZ9 C9 C11 C 0 1 Y N N N N N -16.240 -8.864 65.448 7.767 0.608 -0.324 C9 A1CZ9 13 A1CZ9 C8 C12 C 0 1 Y N N N N N -15.488 -7.793 65.007 6.625 1.390 -0.326 C8 A1CZ9 14 A1CZ9 C12 C13 C 0 1 N N N N N N -13.942 -12.138 66.487 6.992 -3.454 -1.045 C12 A1CZ9 15 A1CZ9 C17 C14 C 0 1 Y N N N N N -7.274 -6.744 58.403 -3.545 -0.867 1.534 C17 A1CZ9 16 A1CZ9 C16 C15 C 0 1 Y N N N N N -7.646 -7.009 59.751 -2.408 -0.263 2.023 C16 A1CZ9 17 A1CZ9 C14 C16 C 0 1 N N N N N N -9.510 -6.830 61.451 -0.116 0.832 1.359 C14 A1CZ9 18 A1CZ9 C13 C17 C 0 1 N N N N N N -14.605 -12.644 64.063 7.177 -3.163 1.430 C13 A1CZ9 19 A1CZ9 C15 C18 C 0 1 Y N N N N N -8.951 -6.687 60.140 -1.413 0.168 1.141 C15 A1CZ9 20 A1CZ9 C18 C19 C 0 1 Y N N N N N -8.236 -6.173 57.500 -3.706 -1.051 0.166 C18 A1CZ9 21 A1CZ9 C19 C20 C 0 1 Y N N N N N -9.533 -5.884 57.965 -2.718 -0.625 -0.717 C19 A1CZ9 22 A1CZ9 C20 C21 C 0 1 Y N N N N N -9.849 -6.150 59.298 -1.583 -0.021 -0.235 C20 A1CZ9 23 A1CZ9 N2 N2 N 0 1 Y N N N N N -15.800 -10.125 65.373 7.652 -0.700 -0.157 N2 A1CZ9 24 A1CZ9 O1 O2 O 0 1 N N N N N N -12.598 -11.547 64.659 5.027 -3.150 0.328 O1 A1CZ9 25 A1CZ9 N3 N3 N 0 1 Y N N N N N -13.768 -9.324 64.358 5.359 -0.562 -0.002 N3 A1CZ9 26 A1CZ9 N4 N4 N 0 1 N N N N N N -10.766 -6.341 61.351 0.501 1.051 0.184 N4 A1CZ9 27 A1CZ9 C21 C22 C 0 1 N N N N N N -11.171 -5.869 59.972 -0.353 0.544 -0.893 C21 A1CZ9 28 A1CZ9 C23 C23 C 0 1 N N N N N N -12.496 -6.244 59.368 -0.435 1.260 -2.239 C23 A1CZ9 29 A1CZ9 O2 O3 O 0 1 N N N N N N -7.916 -5.880 56.190 -4.828 -1.648 -0.310 O2 A1CZ9 30 A1CZ9 C24 C24 C 0 1 Y N N N N N -6.829 -6.416 55.567 -6.008 -0.984 -0.183 C24 A1CZ9 31 A1CZ9 C25 C25 C 0 1 Y N N N N N -6.809 -7.783 55.236 -7.199 -1.608 -0.530 C25 A1CZ9 32 A1CZ9 C26 C26 C 0 1 Y N N N N N -5.687 -8.331 54.595 -8.397 -0.930 -0.400 C26 A1CZ9 33 A1CZ9 C27 C27 C 0 1 Y N N N N N -4.584 -7.514 54.290 -8.409 0.370 0.077 C27 A1CZ9 34 A1CZ9 C28 C28 C 0 1 Y N N N N N -4.607 -6.147 54.609 -7.222 0.993 0.423 C28 A1CZ9 35 A1CZ9 C29 C29 C 0 1 Y N N N N N -5.731 -5.596 55.248 -6.023 0.316 0.300 C29 A1CZ9 36 A1CZ9 F1 F1 F 0 1 N N N N N N -3.500 -8.046 53.699 -9.580 1.031 0.204 F1 A1CZ9 37 A1CZ9 F2 F2 F 0 1 N N N N N N -7.866 -8.569 55.543 -7.187 -2.876 -0.996 F2 A1CZ9 38 A1CZ9 H222 H1 H 0 0 N N N N N N -11.954 -4.109 58.781 1.335 -0.133 -2.217 H222 A1CZ9 39 A1CZ9 H221 H2 H 0 0 N N N N N N -12.668 -4.231 60.424 -0.276 -0.963 -2.560 H221 A1CZ9 40 A1CZ9 H13 H3 H 0 0 N N N N N N -11.639 -3.219 61.579 0.236 3.994 -1.168 H1_3 A1CZ9 41 A1CZ9 H12 H4 H 0 0 N N N N N N -11.066 -2.912 63.254 -0.151 3.445 0.481 H1_2 A1CZ9 42 A1CZ9 H11 H5 H 0 0 N N N N N N -10.112 -3.968 62.158 0.858 4.891 0.239 H1_1 A1CZ9 43 A1CZ9 HC6 H6 H 0 1 N N N N N N -13.090 -3.733 64.300 3.181 4.679 -0.434 HC6 A1CZ9 44 A1CZ9 HC4 H7 H 0 1 N N N N N N -12.129 -8.257 62.664 2.875 -0.169 0.139 HC4 A1CZ9 45 A1CZ9 HC9 H8 H 0 1 N N N N N N -17.217 -8.677 65.868 8.739 1.060 -0.450 HC9 A1CZ9 46 A1CZ9 HC8 H9 H 0 1 N N N N N N -15.857 -6.781 65.087 6.687 2.461 -0.453 HC8 A1CZ9 47 A1CZ9 H121 H10 H 0 0 N N N N N N -13.460 -11.382 67.125 8.035 -3.156 -1.158 H121 A1CZ9 48 A1CZ9 H123 H11 H 0 0 N N N N N N -14.977 -12.297 66.825 6.936 -4.535 -0.913 H123 A1CZ9 49 A1CZ9 H122 H12 H 0 0 N N N N N N -13.385 -13.084 66.554 6.433 -3.167 -1.935 H122 A1CZ9 50 A1CZ9 HC17 H13 H 0 0 N N N N N N -6.275 -6.970 58.061 -4.313 -1.199 2.216 HC17 A1CZ9 51 A1CZ9 HC16 H14 H 0 0 N N N N N N -6.946 -7.443 60.449 -2.286 -0.121 3.087 HC16 A1CZ9 52 A1CZ9 H133 H15 H 0 0 N N N N N N -15.669 -12.757 64.318 8.220 -2.865 1.317 H133 A1CZ9 53 A1CZ9 H132 H16 H 0 0 N N N N N N -14.513 -12.268 63.034 6.751 -2.668 2.302 H132 A1CZ9 54 A1CZ9 H131 H17 H 0 0 N N N N N N -14.103 -13.620 64.143 7.121 -4.244 1.561 H131 A1CZ9 55 A1CZ9 HC19 H18 H 0 0 N N N N N N -10.272 -5.463 57.300 -2.845 -0.768 -1.780 HC19 A1CZ9 56 A1CZ9 HO1 H19 H 0 1 N N N N N N -12.156 -10.938 65.238 4.582 -2.747 1.086 HO1 A1CZ9 57 A1CZ9 H232 H20 H 0 0 N N N N N N -13.258 -6.747 59.981 0.203 2.132 -2.386 H232 A1CZ9 58 A1CZ9 H231 H21 H 0 0 N N N N N N -12.544 -6.626 58.337 -1.408 1.302 -2.729 H231 A1CZ9 59 A1CZ9 HC26 H22 H 0 0 N N N N N N -5.671 -9.379 54.336 -9.324 -1.414 -0.670 HC26 A1CZ9 60 A1CZ9 HC28 H23 H 0 0 N N N N N N -3.763 -5.520 54.364 -7.233 2.007 0.794 HC28 A1CZ9 61 A1CZ9 HC29 H24 H 0 0 N N N N N N -5.752 -4.545 55.494 -5.098 0.803 0.571 HC29 A1CZ9 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CZ9 F1 C27 SING N N 1 A1CZ9 C27 C26 DOUB Y N 2 A1CZ9 C27 C28 SING Y N 3 A1CZ9 C26 C25 SING Y N 4 A1CZ9 C28 C29 DOUB Y N 5 A1CZ9 C25 F2 SING N N 6 A1CZ9 C25 C24 DOUB Y N 7 A1CZ9 C29 C24 SING Y N 8 A1CZ9 C24 O2 SING N N 9 A1CZ9 O2 C18 SING N N 10 A1CZ9 C18 C19 DOUB Y N 11 A1CZ9 C18 C17 SING Y N 12 A1CZ9 C19 C20 SING Y N 13 A1CZ9 C17 C16 DOUB Y N 14 A1CZ9 C20 C21 SING N N 15 A1CZ9 C20 C15 DOUB Y N 16 A1CZ9 C23 C22 SING N N 17 A1CZ9 C23 C21 SING N N 18 A1CZ9 C22 C21 SING N N 19 A1CZ9 C16 C15 SING Y N 20 A1CZ9 C21 N4 SING N N 21 A1CZ9 C15 C14 SING N N 22 A1CZ9 N4 C14 SING N N 23 A1CZ9 N4 C3 SING N N 24 A1CZ9 C14 O3 DOUB N N 25 A1CZ9 C3 C2 DOUB Y N 26 A1CZ9 C3 C4 SING Y N 27 A1CZ9 C1 C2 SING N N 28 A1CZ9 C2 C6 SING Y N 29 A1CZ9 C4 C5 DOUB Y N 30 A1CZ9 C6 N1 DOUB Y N 31 A1CZ9 C5 N1 SING Y N 32 A1CZ9 C5 C7 SING N N 33 A1CZ9 C13 C11 SING N N 34 A1CZ9 N3 C7 DOUB Y N 35 A1CZ9 N3 C10 SING Y N 36 A1CZ9 C7 C8 SING Y N 37 A1CZ9 O1 C11 SING N N 38 A1CZ9 C10 C11 SING N N 39 A1CZ9 C10 N2 DOUB Y N 40 A1CZ9 C8 C9 DOUB Y N 41 A1CZ9 C11 C12 SING N N 42 A1CZ9 N2 C9 SING Y N 43 A1CZ9 C22 H222 SING N N 44 A1CZ9 C22 H221 SING N N 45 A1CZ9 C1 H13 SING N N 46 A1CZ9 C1 H12 SING N N 47 A1CZ9 C1 H11 SING N N 48 A1CZ9 C6 HC6 SING N N 49 A1CZ9 C4 HC4 SING N N 50 A1CZ9 C9 HC9 SING N N 51 A1CZ9 C8 HC8 SING N N 52 A1CZ9 C12 H121 SING N N 53 A1CZ9 C12 H123 SING N N 54 A1CZ9 C12 H122 SING N N 55 A1CZ9 C17 HC17 SING N N 56 A1CZ9 C16 HC16 SING N N 57 A1CZ9 C13 H133 SING N N 58 A1CZ9 C13 H132 SING N N 59 A1CZ9 C13 H131 SING N N 60 A1CZ9 C19 HC19 SING N N 61 A1CZ9 O1 HO1 SING N N 62 A1CZ9 C23 H232 SING N N 63 A1CZ9 C23 H231 SING N N 64 A1CZ9 C26 HC26 SING N N 65 A1CZ9 C28 HC28 SING N N 66 A1CZ9 C29 HC29 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CZ9 SMILES ACDLabs 14.52 "CC(C)(O)c1nccc(n1)c1cc(c(C)cn1)N1C(=O)c2ccc(cc2C21CC2)Oc1ccc(F)cc1F" A1CZ9 InChI InChI 1.06 "InChI=1S/C29H24F2N4O3/c1-16-15-33-23(22-8-11-32-27(34-22)28(2,3)37)14-24(16)35-26(36)19-6-5-18(13-20(19)29(35)9-10-29)38-25-7-4-17(30)12-21(25)31/h4-8,11-15,37H,9-10H2,1-3H3" A1CZ9 InChIKey InChI 1.06 JKGYXZWLYOQMNK-UHFFFAOYSA-N A1CZ9 SMILES_CANONICAL CACTVS 3.385 "Cc1cnc(cc1N2C(=O)c3ccc(Oc4ccc(F)cc4F)cc3C25CC5)c6ccnc(n6)C(C)(C)O" A1CZ9 SMILES CACTVS 3.385 "Cc1cnc(cc1N2C(=O)c3ccc(Oc4ccc(F)cc4F)cc3C25CC5)c6ccnc(n6)C(C)(C)O" A1CZ9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cnc(cc1N2C(=O)c3ccc(cc3C24CC4)Oc5ccc(cc5F)F)c6ccnc(n6)C(C)(C)O" A1CZ9 SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cnc(cc1N2C(=O)c3ccc(cc3C24CC4)Oc5ccc(cc5F)F)c6ccnc(n6)C(C)(C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CZ9 "SYSTEMATIC NAME" ACDLabs 14.52 "6'-(2,4-difluorophenoxy)-2'-{2-[2-(2-hydroxypropan-2-yl)pyrimidin-4-yl]-5-methylpyridin-4-yl}spiro[cyclopropane-1,1'-isoindol]-3'(2'H)-one" A1CZ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5'-[2,4-bis(fluoranyl)phenoxy]-2'-[5-methyl-2-[2-(2-oxidanylpropan-2-yl)pyrimidin-4-yl]pyridin-4-yl]spiro[cyclopropane-1,3'-isoindole]-1'-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CZ9 "Create component" 2025-11-09 RCSB A1CZ9 "Initial release" 2026-11-11 RCSB #