data_A1CZY # _chem_comp.id A1CZY _chem_comp.name "3-({5-chloro-2-[2-(difluoromethoxy)-4-(4-methylpiperazin-1-yl)anilino]pyrimidin-4-yl}amino)thiophene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 Cl F2 N7 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms OICR16422 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-05 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.960 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CZY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9YSQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CZY C14 C1 C 0 1 Y N N N N N -4.394 -0.064 -0.222 2.547 -2.402 -0.578 C14 A1CZY 1 A1CZY C11 C2 C 0 1 Y N N N N N -4.869 -2.576 -1.241 0.876 -0.366 -0.067 C11 A1CZY 2 A1CZY C13 C3 C 0 1 Y N N N N N -3.773 -0.539 -1.375 1.178 -2.592 -0.586 C13 A1CZY 3 A1CZY C01 C4 C 0 1 N N N N N N -10.999 -10.545 3.277 -9.342 -1.899 0.176 C01 A1CZY 4 A1CZY C03 C5 C 0 1 N N N N N N -9.158 -9.075 3.284 -7.647 -0.297 -0.476 C03 A1CZY 5 A1CZY C04 C6 C 0 1 N N N N N N -8.414 -7.938 2.571 -6.140 -0.099 -0.657 C04 A1CZY 6 A1CZY C06 C7 C 0 1 Y N N N N N -7.467 -6.977 0.359 -4.093 -0.040 0.525 C06 A1CZY 7 A1CZY C07 C8 C 0 1 Y N N N N N -6.555 -6.111 0.966 -3.181 -1.018 0.897 C07 A1CZY 8 A1CZY C08 C9 C 0 1 Y N N N N N -5.820 -5.142 0.251 -1.824 -0.779 0.788 C08 A1CZY 9 A1CZY C09 C10 C 0 1 Y N N N N N -5.899 -4.912 -1.145 -1.370 0.439 0.306 C09 A1CZY 10 A1CZY C16 C11 C 0 1 Y N N N N N -5.297 -0.915 0.437 3.040 -1.124 -0.299 C16 A1CZY 11 A1CZY C18 C12 C 0 1 Y N N N N N -6.676 -1.376 2.522 4.890 0.374 0.066 C18 A1CZY 12 A1CZY C19 C13 C 0 1 Y N N N N N -7.579 -2.429 1.995 4.084 1.487 0.209 C19 A1CZY 13 A1CZY C20 C14 C 0 1 Y N N N N N -8.193 -3.188 2.931 4.723 2.610 0.546 C20 A1CZY 14 A1CZY C22 C15 C 0 1 Y N N N N N -6.647 -1.398 3.903 6.218 0.638 0.306 C22 A1CZY 15 A1CZY C23 C16 C 0 1 N N N N N N -5.862 -0.496 4.783 7.269 -0.308 0.239 C23 A1CZY 16 A1CZY C27 C17 C 0 1 Y N N N N N -6.828 -5.778 -1.779 -2.283 1.423 -0.068 C27 A1CZY 17 A1CZY C29 C18 C 0 1 N N N N N N -6.977 -6.791 -3.989 -2.832 3.580 -0.905 C29 A1CZY 18 A1CZY C32 C19 C 0 1 Y N N N N N -7.572 -6.759 -1.052 -3.642 1.180 0.037 C32 A1CZY 19 A1CZY C33 C20 C 0 1 N N N N N N -9.607 -8.450 0.506 -5.720 -1.629 1.172 C33 A1CZY 20 A1CZY C34 C21 C 0 1 N N N N N N -10.322 -9.604 1.222 -7.227 -1.827 1.352 C34 A1CZY 21 A1CZY F30 F1 F 0 1 N N N N N N -6.070 -7.622 -3.501 -3.642 3.054 -1.917 F30 A1CZY 22 A1CZY F31 F2 F 0 1 N N N N N N -8.112 -7.410 -3.902 -3.618 3.886 0.211 F31 A1CZY 23 A1CZY N02 N1 N 0 1 N N N N N N -10.480 -9.297 2.659 -7.901 -1.642 0.060 N02 A1CZY 24 A1CZY N05 N2 N 0 1 N N N N N N -8.268 -8.020 1.061 -5.466 -0.284 0.636 N05 A1CZY 25 A1CZY N10 N3 N 0 1 N N N N N N -5.090 -3.858 -1.774 0.008 0.681 0.196 N10 A1CZY 26 A1CZY N12 N4 N 0 1 Y N N N N N -3.979 -1.762 -1.907 0.380 -1.566 -0.329 N12 A1CZY 27 A1CZY N17 N5 N 0 1 N N N N N N -5.966 -0.522 1.600 4.407 -0.886 -0.281 N17 A1CZY 28 A1CZY N24 N6 N 0 1 N N N N N N -5.388 -0.790 6.065 8.536 0.073 0.498 N24 A1CZY 29 A1CZY N26 N7 N 0 1 Y N N N N N -5.519 -2.166 -0.085 2.181 -0.141 -0.050 N26 A1CZY 30 A1CZY O25 O1 O 0 1 N N N N N N -5.594 0.630 4.347 7.029 -1.466 -0.052 O25 A1CZY 31 A1CZY O28 O2 O 0 1 N N N N N N -7.001 -5.638 -3.154 -1.839 2.618 -0.541 O28 A1CZY 32 A1CZY S21 S1 S 0 1 Y N N N N N -7.702 -2.670 4.499 6.400 2.340 0.706 S21 A1CZY 33 A1CZY CL15 CL1 CL 0 0 N N N N N N -4.078 1.498 0.387 3.628 -3.720 -0.903 CL15 A1CZY 34 A1CZY H131 H1 H 0 0 N N N N N N -3.078 0.117 -1.878 0.763 -3.566 -0.799 H131 A1CZY 35 A1CZY H011 H2 H 0 0 N N N N N N -11.989 -10.778 2.858 -9.806 -1.821 -0.807 H011 A1CZY 36 A1CZY H012 H3 H 0 0 N N N N N N -10.307 -11.374 3.065 -9.502 -2.901 0.575 H012 A1CZY 37 A1CZY H013 H4 H 0 0 N N N N N N -11.084 -10.407 4.365 -9.789 -1.165 0.847 H013 A1CZY 38 A1CZY H031 H5 H 0 0 N N N N N N -9.297 -8.809 4.342 -8.031 0.449 0.219 H031 A1CZY 39 A1CZY H032 H6 H 0 0 N N N N N N -8.564 -9.998 3.213 -8.146 -0.189 -1.439 H032 A1CZY 40 A1CZY H041 H7 H 0 0 N N N N N N -8.949 -7.004 2.798 -5.760 -0.828 -1.372 H041 A1CZY 41 A1CZY H042 H8 H 0 0 N N N N N N -7.400 -7.893 2.996 -5.947 0.908 -1.027 H042 A1CZY 42 A1CZY H071 H9 H 0 0 N N N N N N -6.405 -6.187 2.033 -3.533 -1.968 1.273 H071 A1CZY 43 A1CZY H081 H10 H 0 0 N N N N N N -5.139 -4.523 0.816 -1.117 -1.542 1.078 H081 A1CZY 44 A1CZY H191 H11 H 0 0 N N N N N N -7.735 -2.579 0.937 3.015 1.452 0.060 H191 A1CZY 45 A1CZY H201 H12 H 0 0 N N N N N N -8.883 -3.993 2.727 4.242 3.565 0.696 H201 A1CZY 46 A1CZY H291 H13 H 0 0 N N N N N N -6.744 -6.500 -5.024 -2.344 4.486 -1.265 H291 A1CZY 47 A1CZY H321 H14 H 0 0 N N N N N N -8.261 -7.379 -1.606 -4.351 1.940 -0.257 H321 A1CZY 48 A1CZY H331 H15 H 0 0 N N N N N N -10.275 -7.576 0.537 -5.221 -1.737 2.135 H331 A1CZY 49 A1CZY H332 H16 H 0 0 N N N N N N -9.450 -8.755 -0.539 -5.335 -2.375 0.477 H332 A1CZY 50 A1CZY H341 H17 H 0 0 N N N N N N -11.315 -9.751 0.771 -7.419 -2.834 1.722 H341 A1CZY 51 A1CZY H342 H18 H 0 0 N N N N N N -9.729 -10.523 1.111 -7.606 -1.098 2.068 H342 A1CZY 52 A1CZY H101 H20 H 0 0 N N N N N N -4.662 -4.070 -2.653 0.352 1.581 0.304 H101 A1CZY 53 A1CZY H171 H21 H 0 0 N N N N N N -5.951 0.454 1.816 5.026 -1.597 -0.509 H171 A1CZY 54 A1CZY H241 H22 H 0 0 N N N N N N -4.865 -0.106 6.574 8.727 0.996 0.729 H241 A1CZY 55 A1CZY H242 H23 H 0 0 N N N N N N -5.572 -1.684 6.473 9.256 -0.575 0.451 H242 A1CZY 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CZY N02 C01 SING N N 1 A1CZY C03 N02 SING N N 2 A1CZY C04 C03 SING N N 3 A1CZY N05 C04 SING N N 4 A1CZY C07 C06 DOUB Y N 5 A1CZY C08 C07 SING Y N 6 A1CZY C09 C08 DOUB Y N 7 A1CZY C11 N10 SING N N 8 A1CZY N12 C11 DOUB Y N 9 A1CZY C13 N12 SING Y N 10 A1CZY C14 C13 DOUB Y N 11 A1CZY CL15 C14 SING N N 12 A1CZY C16 C14 SING Y N 13 A1CZY C18 N17 SING N N 14 A1CZY C19 C18 SING Y N 15 A1CZY C20 C19 DOUB Y N 16 A1CZY S21 C20 SING Y N 17 A1CZY C22 S21 SING Y N 18 A1CZY C23 C22 SING N N 19 A1CZY N24 C23 SING N N 20 A1CZY O25 C23 DOUB N N 21 A1CZY N17 C16 SING N N 22 A1CZY N26 C16 DOUB Y N 23 A1CZY N10 C09 SING N N 24 A1CZY C27 C09 SING Y N 25 A1CZY C29 O28 SING N N 26 A1CZY F30 C29 SING N N 27 A1CZY F31 C29 SING N N 28 A1CZY O28 C27 SING N N 29 A1CZY C32 C27 DOUB Y N 30 A1CZY C06 N05 SING N N 31 A1CZY C33 N05 SING N N 32 A1CZY C34 C33 SING N N 33 A1CZY N02 C34 SING N N 34 A1CZY C06 C32 SING Y N 35 A1CZY C11 N26 SING Y N 36 A1CZY C18 C22 DOUB Y N 37 A1CZY C13 H131 SING N N 38 A1CZY C01 H011 SING N N 39 A1CZY C01 H012 SING N N 40 A1CZY C01 H013 SING N N 41 A1CZY C03 H031 SING N N 42 A1CZY C03 H032 SING N N 43 A1CZY C04 H041 SING N N 44 A1CZY C04 H042 SING N N 45 A1CZY C07 H071 SING N N 46 A1CZY C08 H081 SING N N 47 A1CZY C19 H191 SING N N 48 A1CZY C20 H201 SING N N 49 A1CZY C29 H291 SING N N 50 A1CZY C32 H321 SING N N 51 A1CZY C33 H331 SING N N 52 A1CZY C33 H332 SING N N 53 A1CZY C34 H341 SING N N 54 A1CZY C34 H342 SING N N 55 A1CZY N10 H101 SING N N 56 A1CZY N17 H171 SING N N 57 A1CZY N24 H241 SING N N 58 A1CZY N24 H242 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CZY SMILES ACDLabs 14.52 "CN1CCN(CC1)c1ccc(Nc2nc(Nc3ccsc3C(N)=O)c(Cl)cn2)c(OC(F)F)c1" A1CZY InChI InChI 1.06 "InChI=1S/C21H22ClF2N7O2S/c1-30-5-7-31(8-6-30)12-2-3-14(16(10-12)33-20(23)24)28-21-26-11-13(22)19(29-21)27-15-4-9-34-17(15)18(25)32/h2-4,9-11,20H,5-8H2,1H3,(H2,25,32)(H2,26,27,28,29)" A1CZY InChIKey InChI 1.06 YBJODOWCNVOAGV-UHFFFAOYSA-N A1CZY SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc(Nc3ncc(Cl)c(Nc4ccsc4C(N)=O)n3)c(OC(F)F)c2" A1CZY SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc(Nc3ncc(Cl)c(Nc4ccsc4C(N)=O)n3)c(OC(F)F)c2" A1CZY SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN1CCN(CC1)c2ccc(c(c2)OC(F)F)Nc3ncc(c(n3)Nc4ccsc4C(=O)N)Cl" A1CZY SMILES "OpenEye OEToolkits" 3.1.0.0 "CN1CCN(CC1)c2ccc(c(c2)OC(F)F)Nc3ncc(c(n3)Nc4ccsc4C(=O)N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CZY "SYSTEMATIC NAME" ACDLabs 14.52 "3-({5-chloro-2-[2-(difluoromethoxy)-4-(4-methylpiperazin-1-yl)anilino]pyrimidin-4-yl}amino)thiophene-2-carboxamide" A1CZY "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[[2-[[2-[bis(fluoranyl)methoxy]-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-chloranyl-pyrimidin-4-yl]amino]thiophene-2-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1CZY _pdbx_chem_comp_synonyms.name OICR16422 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CZY "Create component" 2025-11-05 RCSB A1CZY "Modify synonyms" 2025-11-11 RCSB A1CZY "Initial release" 2026-04-08 RCSB #