data_A1D09 # _chem_comp.id A1D09 _chem_comp.name "2-(1-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentyl)ethan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.335 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15ID _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D09 C13 C1 C 0 1 N N N N N N -42.251 -31.435 0.989 -4.043 1.404 1.488 C13 A1D09 1 A1D09 C11 C2 C 0 1 N N N N N N -44.682 -31.586 1.065 -3.623 0.632 -0.788 C11 A1D09 2 A1D09 C12 C3 C 0 1 N N N N N N -43.406 -32.158 1.688 -4.445 1.662 0.014 C12 A1D09 3 A1D09 C1 C4 C 0 1 N N N N N N -46.753 -29.769 -0.316 -2.322 -2.030 -0.896 C1 A1D09 4 A1D09 C10 C5 C 0 1 Y N N N N N -46.664 -29.042 4.841 2.435 0.011 0.439 C10 A1D09 5 A1D09 C14 C6 C 0 1 N N N N N N -42.886 -30.344 0.122 -2.530 1.091 1.380 C14 A1D09 6 A1D09 C2 C7 C 0 1 N N N N N N -45.233 -29.654 -0.526 -2.419 -1.227 0.403 C2 A1D09 7 A1D09 C3 C8 C 0 1 N N N N N N -44.323 -30.150 0.632 -2.406 0.269 0.080 C3 A1D09 8 A1D09 C4 C9 C 0 1 N N N N N N -44.295 -29.195 1.860 -1.112 0.635 -0.650 C4 A1D09 9 A1D09 C5 C10 C 0 1 Y N N N N N -45.477 -29.253 4.090 1.321 0.376 -0.332 C5 A1D09 10 A1D09 C6 C11 C 0 1 Y N N N N N -44.316 -29.440 6.097 2.751 0.970 -2.042 C6 A1D09 11 A1D09 C7 C12 C 0 1 Y N N N N N -46.512 -29.060 6.252 3.719 0.160 -0.118 C7 A1D09 12 A1D09 C8 C13 C 0 1 Y N N N N N -48.696 -28.686 5.779 3.958 -0.660 1.957 C8 A1D09 13 A1D09 C9 C14 C 0 1 Y N N N N N -48.054 -28.799 4.565 2.634 -0.523 1.785 C9 A1D09 14 A1D09 N1 N1 N 0 1 N N N N N N -45.499 -29.254 2.686 0.038 0.249 0.171 N1 A1D09 15 A1D09 N2 N2 N 0 1 Y N N N N N -44.311 -29.445 4.758 1.528 0.847 -1.558 N2 A1D09 16 A1D09 N3 N3 N 0 1 Y N N N N N -45.347 -29.256 6.926 3.824 0.641 -1.356 N3 A1D09 17 A1D09 N4 N4 N 0 1 Y N N N N N -47.760 -28.837 6.790 4.618 -0.259 0.824 N4 A1D09 18 A1D09 O1 O1 O 0 1 N N N N N N -47.237 -28.560 0.222 -2.343 -3.426 -0.595 O1 A1D09 19 A1D09 H18 H1 H 0 1 N N N N N N -41.686 -32.139 0.361 -4.211 2.293 2.095 H18 A1D09 20 A1D09 H17 H2 H 0 1 N N N N N N -41.577 -30.985 1.733 -4.589 0.552 1.893 H17 A1D09 21 A1D09 H14 H3 H 0 1 N N N N N N -45.497 -31.572 1.803 -4.224 -0.257 -0.979 H14 A1D09 22 A1D09 H13 H4 H 0 1 N N N N N N -44.986 -32.185 0.194 -3.294 1.069 -1.730 H13 A1D09 23 A1D09 H16 H5 H 0 1 N N N N N N -43.344 -33.242 1.511 -5.512 1.491 -0.126 H16 A1D09 24 A1D09 H15 H6 H 0 1 N N N N N N -43.385 -31.961 2.770 -4.178 2.677 -0.282 H15 A1D09 25 A1D09 H3 H7 H 0 1 N N N N N N -47.244 -29.966 -1.280 -3.168 -1.784 -1.539 H3 A1D09 26 A1D09 H2 H8 H 0 1 N N N N N N -46.967 -30.594 0.380 -1.392 -1.782 -1.407 H2 A1D09 27 A1D09 H19 H9 H 0 1 N N N N N N -42.898 -30.657 -0.932 -1.954 2.013 1.304 H19 A1D09 28 A1D09 H20 H10 H 0 1 N N N N N N -42.320 -29.406 0.219 -2.200 0.503 2.236 H20 A1D09 29 A1D09 H5 H11 H 0 1 N N N N N N -44.977 -30.237 -1.423 -3.346 -1.479 0.918 H5 A1D09 30 A1D09 H4 H12 H 0 1 N N N N N N -45.001 -28.593 -0.700 -1.571 -1.468 1.044 H4 A1D09 31 A1D09 H7 H13 H 0 1 N N N N N N -43.432 -29.463 2.487 -1.071 0.109 -1.603 H7 A1D09 32 A1D09 H6 H14 H 0 1 N N N N N N -44.177 -28.164 1.494 -1.087 1.711 -0.827 H6 A1D09 33 A1D09 H9 H15 H 0 1 N N N N N N -43.359 -29.607 6.569 2.876 1.357 -3.043 H9 A1D09 34 A1D09 H11 H16 H 0 1 N N N N N N -49.752 -28.509 5.919 4.433 -1.036 2.851 H11 A1D09 35 A1D09 H12 H17 H 0 1 N N N N N N -48.510 -28.720 3.589 1.863 -0.762 2.503 H12 A1D09 36 A1D09 H8 H18 H 0 1 N N N N N N -46.051 -28.464 2.421 -0.099 -0.096 1.067 H8 A1D09 37 A1D09 H10 H19 H 0 1 N N N N N N -47.962 -28.791 7.768 5.581 -0.267 0.708 H10 A1D09 38 A1D09 H1 H20 H 0 1 N N N N N N -48.176 -28.625 0.354 -2.285 -3.997 -1.373 H1 A1D09 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D09 C2 C1 SING N N 1 A1D09 C2 C3 SING N N 2 A1D09 C1 O1 SING N N 3 A1D09 C14 C3 SING N N 4 A1D09 C14 C13 SING N N 5 A1D09 C3 C11 SING N N 6 A1D09 C3 C4 SING N N 7 A1D09 C13 C12 SING N N 8 A1D09 C11 C12 SING N N 9 A1D09 C4 N1 SING N N 10 A1D09 N1 C5 SING N N 11 A1D09 C5 N2 DOUB Y N 12 A1D09 C5 C10 SING Y N 13 A1D09 C9 C10 SING Y N 14 A1D09 C9 C8 DOUB Y N 15 A1D09 N2 C6 SING Y N 16 A1D09 C10 C7 DOUB Y N 17 A1D09 C8 N4 SING Y N 18 A1D09 C6 N3 DOUB Y N 19 A1D09 C7 N4 SING Y N 20 A1D09 C7 N3 SING Y N 21 A1D09 C13 H18 SING N N 22 A1D09 C13 H17 SING N N 23 A1D09 C11 H14 SING N N 24 A1D09 C11 H13 SING N N 25 A1D09 C12 H16 SING N N 26 A1D09 C12 H15 SING N N 27 A1D09 C1 H3 SING N N 28 A1D09 C1 H2 SING N N 29 A1D09 C14 H19 SING N N 30 A1D09 C14 H20 SING N N 31 A1D09 C2 H5 SING N N 32 A1D09 C2 H4 SING N N 33 A1D09 C4 H7 SING N N 34 A1D09 C4 H6 SING N N 35 A1D09 C6 H9 SING N N 36 A1D09 C8 H11 SING N N 37 A1D09 C9 H12 SING N N 38 A1D09 N1 H8 SING N N 39 A1D09 N4 H10 SING N N 40 A1D09 O1 H1 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D09 SMILES ACDLabs 14.52 "OCCC1(CCCC1)CNc1ncnc2[NH]ccc21" A1D09 InChI InChI 1.06 "InChI=1S/C14H20N4O/c19-8-6-14(4-1-2-5-14)9-16-13-11-3-7-15-12(11)17-10-18-13/h3,7,10,19H,1-2,4-6,8-9H2,(H2,15,16,17,18)" A1D09 InChIKey InChI 1.06 MKVKACSILWJEHB-UHFFFAOYSA-N A1D09 SMILES_CANONICAL CACTVS 3.385 "OCCC1(CCCC1)CNc2ncnc3[nH]ccc23" A1D09 SMILES CACTVS 3.385 "OCCC1(CCCC1)CNc2ncnc3[nH]ccc23" A1D09 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NCC3(CCCC3)CCO" A1D09 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NCC3(CCCC3)CCO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D09 "SYSTEMATIC NAME" ACDLabs 14.52 "2-(1-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentyl)ethan-1-ol" A1D09 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[1-[(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)methyl]cyclopentyl]ethanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D09 "Create component" 2026-09-01 RCSB A1D09 "Initial release" 2026-11-04 RCSB #