data_A1D0A # _chem_comp.id A1D0A _chem_comp.name "[(6S)-6-(hydroxymethyl)-5-azaspiro[2.4]heptan-5-yl](7H-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-28 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 272.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D0A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15FK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D0A C13 C1 C 0 1 N N S N N N -45.932 -31.105 2.077 2.488 -1.190 -0.206 C13 A1D0A 1 A1D0A C11 C2 C 0 1 N N N N N N -45.618 -31.384 -1.618 4.064 2.337 0.109 C11 A1D0A 2 A1D0A C12 C3 C 0 1 N N N N N N -46.728 -31.098 0.766 3.736 -0.320 0.070 C12 A1D0A 3 A1D0A C1 C4 C 0 1 N N N N N N -44.355 -29.267 2.799 0.023 -0.721 -0.184 C1 A1D0A 4 A1D0A C10 C5 C 0 1 N N N N N N -46.261 -30.025 -1.595 3.595 1.973 -1.304 C10 A1D0A 5 A1D0A C14 C6 C 0 1 N N N N N N -45.280 -32.472 2.362 2.444 -2.362 0.775 C14 A1D0A 6 A1D0A C2 C7 C 0 1 Y N N N N N -44.778 -29.375 4.234 -1.075 0.246 0.043 C2 A1D0A 7 A1D0A C3 C8 C 0 1 Y N N N N N -44.203 -29.790 6.442 -1.791 2.362 0.618 C3 A1D0A 8 A1D0A C4 C9 C 0 1 Y N N N N N -46.334 -29.246 6.055 -3.426 0.831 0.106 C4 A1D0A 9 A1D0A C5 C10 C 0 1 Y N N N N N -48.289 -28.662 5.063 -4.423 -1.090 -0.484 C5 A1D0A 10 A1D0A C6 C11 C 0 1 Y N N N N N -47.366 -28.743 4.050 -3.105 -1.361 -0.503 C6 A1D0A 11 A1D0A C7 C12 C 0 1 Y N N N N N -46.111 -29.112 4.657 -2.415 -0.134 -0.124 C7 A1D0A 12 A1D0A C8 C13 C 0 1 N N N N N N -44.595 -30.051 0.436 1.753 1.014 0.385 C8 A1D0A 13 A1D0A C9 C14 C 0 1 N N N N N N -45.765 -30.649 -0.305 3.201 1.111 -0.120 C9 A1D0A 14 A1D0A N1 N1 N 0 1 Y N N N N N -43.843 -29.704 5.159 -0.817 1.499 0.415 N1 A1D0A 15 A1D0A N2 N2 N 0 1 Y N N N N N -45.405 -29.586 6.992 -3.064 2.053 0.470 N2 A1D0A 16 A1D0A N3 N3 N 0 1 Y N N N N N -47.667 -28.963 6.263 -4.627 0.215 -0.126 N3 A1D0A 17 A1D0A N4 N4 N 0 1 N N N N N N -44.915 -30.071 1.862 1.304 -0.337 -0.019 N4 A1D0A 18 A1D0A O1 O1 O 0 1 N N N N N N -43.503 -28.427 2.510 -0.231 -1.861 -0.519 O1 A1D0A 19 A1D0A O2 O2 O 0 1 N N N N N N -44.135 -32.334 3.176 1.351 -3.221 0.443 O2 A1D0A 20 A1D0A H13 H1 H 0 1 N N N N N N -46.593 -30.831 2.913 2.517 -1.564 -1.230 H13 A1D0A 21 A1D0A H10 H2 H 0 1 N N N N N N -46.228 -32.277 -1.819 5.115 2.175 0.348 H10 A1D0A 22 A1D0A H9 H3 H 0 1 N N N N N N -44.622 -31.512 -2.067 3.599 3.198 0.588 H9 A1D0A 23 A1D0A H12 H4 H 0 1 N N N N N N -47.574 -30.398 0.837 4.091 -0.467 1.089 H12 A1D0A 24 A1D0A H11 H5 H 0 1 N N N N N N -47.104 -32.107 0.542 4.526 -0.539 -0.649 H11 A1D0A 25 A1D0A H8 H6 H 0 1 N N N N N N -45.735 -29.160 -2.025 2.822 2.596 -1.754 H8 A1D0A 26 A1D0A H7 H7 H 0 1 N N N N N N -47.341 -29.925 -1.777 4.338 1.573 -1.995 H7 A1D0A 27 A1D0A H14 H8 H 0 1 N N N N N N -46.009 -33.117 2.875 3.378 -2.922 0.714 H14 A1D0A 28 A1D0A H15 H9 H 0 1 N N N N N N -44.988 -32.936 1.408 2.314 -1.983 1.789 H15 A1D0A 29 A1D0A H1 H10 H 0 1 N N N N N N -43.416 -30.061 7.130 -1.536 3.368 0.916 H1 A1D0A 30 A1D0A H3 H11 H 0 1 N N N N N N -49.331 -28.405 4.943 -5.204 -1.797 -0.721 H3 A1D0A 31 A1D0A H4 H12 H 0 1 N N N N N N -47.545 -28.565 3.000 -2.646 -2.306 -0.751 H4 A1D0A 32 A1D0A H5 H13 H 0 1 N N N N N N -43.689 -30.645 0.247 1.719 1.117 1.469 H5 A1D0A 33 A1D0A H6 H14 H 0 1 N N N N N N -44.431 -29.015 0.103 1.134 1.777 -0.088 H6 A1D0A 34 A1D0A H2 H15 H 0 1 N N N N N N -48.121 -28.974 7.154 -5.495 0.641 -0.047 H2 A1D0A 35 A1D0A H16 H16 H 0 1 N N N N N N -43.754 -33.190 3.335 1.263 -3.988 1.026 H16 A1D0A 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D0A C11 C10 SING N N 1 A1D0A C11 C9 SING N N 2 A1D0A C10 C9 SING N N 3 A1D0A C9 C8 SING N N 4 A1D0A C9 C12 SING N N 5 A1D0A C8 N4 SING N N 6 A1D0A C12 C13 SING N N 7 A1D0A N4 C13 SING N N 8 A1D0A N4 C1 SING N N 9 A1D0A C13 C14 SING N N 10 A1D0A C14 O2 SING N N 11 A1D0A O1 C1 DOUB N N 12 A1D0A C1 C2 SING N N 13 A1D0A C6 C7 SING Y N 14 A1D0A C6 C5 DOUB Y N 15 A1D0A C2 C7 DOUB Y N 16 A1D0A C2 N1 SING Y N 17 A1D0A C7 C4 SING Y N 18 A1D0A C5 N3 SING Y N 19 A1D0A N1 C3 DOUB Y N 20 A1D0A C4 N3 SING Y N 21 A1D0A C4 N2 DOUB Y N 22 A1D0A C3 N2 SING Y N 23 A1D0A C13 H13 SING N N 24 A1D0A C11 H10 SING N N 25 A1D0A C11 H9 SING N N 26 A1D0A C12 H12 SING N N 27 A1D0A C12 H11 SING N N 28 A1D0A C10 H8 SING N N 29 A1D0A C10 H7 SING N N 30 A1D0A C14 H14 SING N N 31 A1D0A C14 H15 SING N N 32 A1D0A C3 H1 SING N N 33 A1D0A C5 H3 SING N N 34 A1D0A C6 H4 SING N N 35 A1D0A C8 H5 SING N N 36 A1D0A C8 H6 SING N N 37 A1D0A N3 H2 SING N N 38 A1D0A O2 H16 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D0A SMILES ACDLabs 14.52 "O=C(c1ncnc2[NH]ccc21)N1CC2(CC2)CC1CO" A1D0A InChI InChI 1.06 "InChI=1S/C14H16N4O2/c19-6-9-5-14(2-3-14)7-18(9)13(20)11-10-1-4-15-12(10)17-8-16-11/h1,4,8-9,19H,2-3,5-7H2,(H,15,16,17)/t9-/m0/s1" A1D0A InChIKey InChI 1.06 JEJPIPXWSFRTEE-VIFPVBQESA-N A1D0A SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1CC2(CC2)CN1C(=O)c3ncnc4[nH]ccc34" A1D0A SMILES CACTVS 3.385 "OC[CH]1CC2(CC2)CN1C(=O)c3ncnc4[nH]ccc34" A1D0A SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N3CC4(CC4)C[C@H]3CO" A1D0A SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N3CC4(CC4)CC3CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D0A "SYSTEMATIC NAME" ACDLabs 14.52 "[(6S)-6-(hydroxymethyl)-5-azaspiro[2.4]heptan-5-yl](7H-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" A1D0A "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(6~{S})-6-(hydroxymethyl)-5-azaspiro[2.4]heptan-5-yl]-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D0A "Create component" 2026-08-28 RCSB A1D0A "Initial release" 2026-11-04 RCSB #