data_A1D0K # _chem_comp.id A1D0K _chem_comp.name "(1R,5S)-3-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-3-azabicyclo[3.3.1]nonan-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H17 F N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-28 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.352 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D0K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15EG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D0K C13 C1 C 0 1 Y N N N N N -50.634 -28.896 4.684 3.622 -1.745 0.078 C13 A1D0K 1 A1D0K C18 C2 C 0 1 N N N N N N -46.154 -29.908 1.715 -1.540 -0.124 1.435 C18 A1D0K 2 A1D0K C17 C3 C 0 1 Y N N N N N -46.444 -29.275 4.636 0.712 1.302 -0.003 C17 A1D0K 3 A1D0K C16 C4 C 0 1 Y N N N N N -47.865 -29.125 4.387 1.550 0.094 0.039 C16 A1D0K 4 A1D0K C15 C5 C 0 1 Y N N N N N -48.692 -28.923 3.262 1.271 -1.269 0.119 C15 A1D0K 5 A1D0K C11 C6 C 0 1 Y N N N N N -48.492 -29.167 5.671 2.881 0.536 -0.028 C11 A1D0K 6 A1D0K C12 C7 C 0 1 Y N N N N N -49.869 -29.072 5.826 3.911 -0.398 -0.007 C12 A1D0K 7 A1D0K C1 C8 C 0 1 N N N N N N -43.904 -32.091 2.070 -2.079 -1.823 -0.933 C1 A1D0K 8 A1D0K C10 C9 C 0 1 Y N N N N N -46.322 -29.357 6.041 1.588 2.396 -0.081 C10 A1D0K 9 A1D0K C14 C10 C 0 1 Y N N N N N -50.077 -28.807 3.411 2.304 -2.180 0.139 C14 A1D0K 10 A1D0K C2 C11 C 0 1 N N N N N N -45.181 -32.214 1.237 -1.950 -2.396 0.463 C2 A1D0K 11 A1D0K C3 C12 C 0 1 N N S N N N -45.629 -30.871 0.633 -2.452 -1.349 1.463 C3 A1D0K 12 A1D0K C4 C13 C 0 1 N N N N N N -44.477 -30.214 -0.137 -3.879 -0.939 1.090 C4 A1D0K 13 A1D0K C5 C14 C 0 1 N N R N N N -43.349 -29.907 0.859 -3.874 -0.255 -0.279 C5 A1D0K 14 A1D0K C6 C15 C 0 1 N N N N N N -42.802 -31.204 1.491 -3.424 -1.262 -1.344 C6 A1D0K 15 A1D0K C7 C16 C 0 1 N N N N N N -43.842 -28.889 1.908 -2.919 0.937 -0.256 C7 A1D0K 16 A1D0K C8 C17 C 0 1 Y N N N N N -45.207 -29.348 3.929 -0.666 1.543 0.028 C8 A1D0K 17 A1D0K C9 C18 C 0 1 Y N N N N N -44.105 -29.497 5.963 -0.234 3.804 -0.111 C9 A1D0K 18 A1D0K F1 F1 F 0 1 N N N N N N -51.965 -28.831 4.803 4.627 -2.647 0.098 F1 A1D0K 19 A1D0K N1 N1 N 0 1 N N N N N N -45.076 -29.334 2.543 -1.567 0.495 0.105 N1 A1D0K 20 A1D0K N2 N2 N 0 1 Y N N N N N -44.062 -29.425 4.639 -1.090 2.804 -0.017 N2 A1D0K 21 A1D0K N3 N3 N 0 1 Y N N N N N -45.179 -29.471 6.739 1.069 3.622 -0.133 N3 A1D0K 22 A1D0K N4 N4 N 0 1 Y N N N N N -47.544 -29.309 6.656 2.876 1.919 -0.099 N4 A1D0K 23 A1D0K O1 O1 O 0 1 N N N N N N -43.759 -32.695 3.134 -1.143 -1.816 -1.692 O1 A1D0K 24 A1D0K H16 H1 H 0 1 N N N N N N -46.694 -29.086 1.222 -1.880 0.598 2.179 H16 A1D0K 25 A1D0K H17 H2 H 0 1 N N N N N N -46.845 -30.459 2.370 -0.518 -0.427 1.672 H17 A1D0K 26 A1D0K H15 H3 H 0 1 N N N N N N -48.252 -28.857 2.278 0.248 -1.610 0.167 H15 A1D0K 27 A1D0K H13 H4 H 0 1 N N N N N N -50.327 -29.133 6.802 4.939 -0.069 -0.058 H13 A1D0K 28 A1D0K H14 H5 H 0 1 N N N N N N -50.708 -28.650 2.549 2.089 -3.237 0.200 H14 A1D0K 29 A1D0K H1 H6 H 0 1 N N N N N N -45.986 -32.596 1.882 -2.553 -3.300 0.544 H1 A1D0K 30 A1D0K H2 H7 H 0 1 N N N N N N -44.999 -32.925 0.418 -0.906 -2.628 0.667 H2 A1D0K 31 A1D0K H3 H8 H 0 1 N N N N N N -46.447 -31.069 -0.075 -2.451 -1.779 2.466 H3 A1D0K 32 A1D0K H4 H9 H 0 1 N N N N N N -44.110 -30.899 -0.915 -4.512 -1.824 1.051 H4 A1D0K 33 A1D0K H5 H10 H 0 1 N N N N N N -44.825 -29.281 -0.604 -4.265 -0.247 1.839 H5 A1D0K 34 A1D0K H6 H11 H 0 1 N N N N N N -42.527 -29.437 0.299 -4.881 0.091 -0.513 H6 A1D0K 35 A1D0K H8 H12 H 0 1 N N N N N N -42.264 -31.772 0.718 -3.332 -0.761 -2.307 H8 A1D0K 36 A1D0K H7 H13 H 0 1 N N N N N N -42.106 -30.935 2.299 -4.151 -2.070 -1.416 H7 A1D0K 37 A1D0K H10 H14 H 0 1 N N N N N N -43.067 -28.766 2.679 -2.896 1.403 -1.243 H10 A1D0K 38 A1D0K H9 H15 H 0 1 N N N N N N -44.023 -27.924 1.412 -3.269 1.668 0.475 H9 A1D0K 39 A1D0K H11 H16 H 0 1 N N N N N N -43.154 -29.587 6.467 -0.618 4.813 -0.154 H11 A1D0K 40 A1D0K H12 H17 H 0 1 N N N N N N -47.715 -29.367 7.640 3.671 2.473 -0.154 H12 A1D0K 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D0K C4 C3 SING N N 1 A1D0K C4 C5 SING N N 2 A1D0K C3 C2 SING N N 3 A1D0K C3 C18 SING N N 4 A1D0K C5 C6 SING N N 5 A1D0K C5 C7 SING N N 6 A1D0K C2 C1 SING N N 7 A1D0K C6 C1 SING N N 8 A1D0K C18 N1 SING N N 9 A1D0K C7 N1 SING N N 10 A1D0K C1 O1 DOUB N N 11 A1D0K N1 C8 SING N N 12 A1D0K C15 C14 DOUB Y N 13 A1D0K C15 C16 SING Y N 14 A1D0K C14 C13 SING Y N 15 A1D0K C8 C17 DOUB Y N 16 A1D0K C8 N2 SING Y N 17 A1D0K C16 C17 SING Y N 18 A1D0K C16 C11 DOUB Y N 19 A1D0K C17 C10 SING Y N 20 A1D0K N2 C9 DOUB Y N 21 A1D0K C13 F1 SING N N 22 A1D0K C13 C12 DOUB Y N 23 A1D0K C11 C12 SING Y N 24 A1D0K C11 N4 SING Y N 25 A1D0K C9 N3 SING Y N 26 A1D0K C10 N4 SING Y N 27 A1D0K C10 N3 DOUB Y N 28 A1D0K C18 H16 SING N N 29 A1D0K C18 H17 SING N N 30 A1D0K C15 H15 SING N N 31 A1D0K C12 H13 SING N N 32 A1D0K C14 H14 SING N N 33 A1D0K C2 H1 SING N N 34 A1D0K C2 H2 SING N N 35 A1D0K C3 H3 SING N N 36 A1D0K C4 H4 SING N N 37 A1D0K C4 H5 SING N N 38 A1D0K C5 H6 SING N N 39 A1D0K C6 H8 SING N N 40 A1D0K C6 H7 SING N N 41 A1D0K C7 H10 SING N N 42 A1D0K C7 H9 SING N N 43 A1D0K C9 H11 SING N N 44 A1D0K N4 H12 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D0K SMILES ACDLabs 14.52 "Fc1ccc2c3c([NH]c2c1)ncnc3N1CC2CC(=O)CC(C2)C1" A1D0K InChI InChI 1.06 "InChI=1S/C18H17FN4O/c19-12-1-2-14-15(6-12)22-17-16(14)18(21-9-20-17)23-7-10-3-11(8-23)5-13(24)4-10/h1-2,6,9-11H,3-5,7-8H2,(H,20,21,22)/t10-,11+" A1D0K InChIKey InChI 1.06 QCFHWOJAAYDZQL-PHIMTYICSA-N A1D0K SMILES_CANONICAL CACTVS 3.385 "Fc1ccc2c([nH]c3ncnc(N4C[C@H]5C[C@@H](C4)CC(=O)C5)c23)c1" A1D0K SMILES CACTVS 3.385 "Fc1ccc2c([nH]c3ncnc(N4C[CH]5C[CH](C4)CC(=O)C5)c23)c1" A1D0K SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4C[C@@H]5C[C@H](C4)CC(=O)C5" A1D0K SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CC5CC(C4)CC(=O)C5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D0K "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,5S)-3-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-3-azabicyclo[3.3.1]nonan-7-one" A1D0K "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{S},5~{R})-3-(7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-3-azabicyclo[3.3.1]nonan-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D0K "Create component" 2026-08-28 RCSB A1D0K "Initial release" 2026-11-04 RCSB #