data_A1D12 # _chem_comp.id A1D12 _chem_comp.name "4-[(4R)-6-oxa-1-azaspiro[3.5]nonan-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D12 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15IK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D12 C13 C1 C 0 1 Y N N N N N -46.524 -29.043 6.435 -2.740 0.200 0.380 C13 A1D12 1 A1D12 C11 C2 C 0 1 Y N N N N N -48.139 -28.927 4.801 -1.637 1.627 -1.038 C11 A1D12 2 A1D12 C12 C3 C 0 1 Y N N N N N -48.729 -28.734 6.026 -2.755 2.223 -0.591 C12 A1D12 3 A1D12 C1 C4 C 0 1 Y N N N N N -44.344 -29.407 6.227 -2.084 -1.920 0.988 C1 A1D12 4 A1D12 C10 C5 C 0 1 Y N N N N N -46.732 -29.141 5.035 -1.588 0.303 -0.422 C10 A1D12 5 A1D12 C2 C6 C 0 1 Y N N N N N -45.578 -29.406 4.238 -0.702 -0.784 -0.470 C2 A1D12 6 A1D12 C3 C7 C 0 1 N N N N N N -46.786 -30.219 2.219 1.130 -2.038 -1.261 C3 A1D12 7 A1D12 C4 C8 C 0 1 N N N N N N -45.862 -30.411 1.015 2.459 -1.280 -1.123 C4 A1D12 8 A1D12 C5 C9 C 0 1 N N R N N N -44.666 -30.138 1.941 1.579 -0.210 -0.469 C5 A1D12 9 A1D12 C6 C10 C 0 1 N N N N N N -43.648 -29.098 1.482 1.973 1.218 -0.851 C6 A1D12 10 A1D12 C7 C11 C 0 1 N N N N N N -42.735 -29.701 0.414 3.223 1.614 -0.056 C7 A1D12 11 A1D12 C8 C12 C 0 1 N N N N N N -42.115 -31.010 0.933 2.949 1.420 1.437 C8 A1D12 12 A1D12 C9 C13 C 0 1 N N N N N N -43.922 -31.389 2.451 1.423 -0.388 1.041 C9 A1D12 13 A1D12 N1 N1 N 0 1 Y N N N N N -44.396 -29.515 4.900 -0.991 -1.866 0.248 N1 A1D12 14 A1D12 N2 N2 N 0 1 N N N N N N -45.665 -29.503 2.817 0.443 -0.732 -1.244 N2 A1D12 15 A1D12 N3 N3 N 0 1 Y N N N N N -47.751 -28.799 7.005 -3.426 1.376 0.253 N3 A1D12 16 A1D12 N4 N4 N 0 1 Y N N N N N -45.338 -29.170 7.080 -2.944 -0.928 1.059 N4 A1D12 17 A1D12 O1 O1 O 0 1 N N N N N N -43.124 -31.915 1.389 2.618 0.054 1.691 O1 A1D12 18 A1D12 H14 H1 H 0 1 N N N N N N -48.636 -28.920 3.842 -0.911 2.048 -1.718 H14 A1D12 19 A1D12 H15 H2 H 0 1 N N N N N N -49.781 -28.560 6.198 -3.080 3.216 -0.863 H15 A1D12 20 A1D12 H1 H3 H 0 1 N N N N N N -43.366 -29.528 6.669 -2.283 -2.819 1.552 H1 A1D12 21 A1D12 H2 H4 H 0 1 N N N N N N -47.681 -29.609 2.028 1.029 -2.569 -2.207 H2 A1D12 22 A1D12 H3 H5 H 0 1 N N N N N N -47.077 -31.145 2.736 0.895 -2.663 -0.400 H3 A1D12 23 A1D12 H5 H6 H 0 1 N N N N N N -45.997 -29.668 0.215 3.171 -1.748 -0.444 H5 A1D12 24 A1D12 H4 H7 H 0 1 N N N N N N -45.882 -31.423 0.583 2.900 -0.977 -2.072 H4 A1D12 25 A1D12 H7 H8 H 0 1 N N N N N N -43.041 -28.777 2.342 2.189 1.265 -1.919 H7 A1D12 26 A1D12 H6 H9 H 0 1 N N N N N N -44.177 -28.230 1.062 1.156 1.898 -0.614 H6 A1D12 27 A1D12 H8 H10 H 0 1 N N N N N N -41.933 -28.987 0.175 4.061 0.985 -0.358 H8 A1D12 28 A1D12 H9 H11 H 0 1 N N N N N N -43.322 -29.910 -0.492 3.462 2.659 -0.250 H9 A1D12 29 A1D12 H10 H12 H 0 1 N N N N N N -41.548 -31.486 0.119 3.838 1.690 2.007 H10 A1D12 30 A1D12 H11 H13 H 0 1 N N N N N N -41.436 -30.779 1.767 2.118 2.057 1.739 H11 A1D12 31 A1D12 H12 H14 H 0 1 N N N N N N -44.651 -32.146 2.776 0.577 0.203 1.392 H12 A1D12 32 A1D12 H13 H15 H 0 1 N N N N N N -43.276 -31.115 3.298 1.251 -1.440 1.268 H13 A1D12 33 A1D12 H16 H16 H 0 1 N N N N N N -47.914 -28.685 7.985 -4.265 1.582 0.695 H16 A1D12 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D12 C7 C8 SING N N 1 A1D12 C7 C6 SING N N 2 A1D12 C8 O1 SING N N 3 A1D12 C4 C5 SING N N 4 A1D12 C4 C3 SING N N 5 A1D12 O1 C9 SING N N 6 A1D12 C6 C5 SING N N 7 A1D12 C5 C9 SING N N 8 A1D12 C5 N2 SING N N 9 A1D12 C3 N2 SING N N 10 A1D12 N2 C2 SING N N 11 A1D12 C2 N1 DOUB Y N 12 A1D12 C2 C10 SING Y N 13 A1D12 C11 C10 SING Y N 14 A1D12 C11 C12 DOUB Y N 15 A1D12 N1 C1 SING Y N 16 A1D12 C10 C13 DOUB Y N 17 A1D12 C12 N3 SING Y N 18 A1D12 C1 N4 DOUB Y N 19 A1D12 C13 N3 SING Y N 20 A1D12 C13 N4 SING Y N 21 A1D12 C11 H14 SING N N 22 A1D12 C12 H15 SING N N 23 A1D12 C1 H1 SING N N 24 A1D12 C3 H2 SING N N 25 A1D12 C3 H3 SING N N 26 A1D12 C4 H5 SING N N 27 A1D12 C4 H4 SING N N 28 A1D12 C6 H7 SING N N 29 A1D12 C6 H6 SING N N 30 A1D12 C7 H8 SING N N 31 A1D12 C7 H9 SING N N 32 A1D12 C8 H10 SING N N 33 A1D12 C8 H11 SING N N 34 A1D12 C9 H12 SING N N 35 A1D12 C9 H13 SING N N 36 A1D12 N3 H16 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D12 SMILES ACDLabs 14.52 "C1CCOCC11CCN1c1ncnc2[NH]ccc21" A1D12 InChI InChI 1.06 "InChI=1S/C13H16N4O/c1-3-13(8-18-7-1)4-6-17(13)12-10-2-5-14-11(10)15-9-16-12/h2,5,9H,1,3-4,6-8H2,(H,14,15,16)/t13-/m1/s1" A1D12 InChIKey InChI 1.06 NTKJIARCLQRDHO-CYBMUJFWSA-N A1D12 SMILES_CANONICAL CACTVS 3.385 "C1COC[C@@]2(C1)CCN2c3ncnc4[nH]ccc34" A1D12 SMILES CACTVS 3.385 "C1COC[C]2(C1)CCN2c3ncnc4[nH]ccc34" A1D12 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@@]34CCCOC4" A1D12 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC34CCCOC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D12 "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(4R)-6-oxa-1-azaspiro[3.5]nonan-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" A1D12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(4~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-8-oxa-1-azaspiro[3.5]nonane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D12 "Create component" 2026-09-01 RCSB A1D12 "Initial release" 2026-11-04 RCSB #