data_A1D1J # _chem_comp.id A1D1J _chem_comp.name "(3R)-1-cyclopropyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pyrrolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 257.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D1J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15HJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D1J C13 C1 C 0 1 N N N N N N -44.972 -33.504 -1.192 -4.190 -0.760 1.883 C13 A1D1J 1 A1D1J C11 C2 C 0 1 N N N N N N -44.569 -33.457 0.266 -4.293 -0.404 0.399 C11 A1D1J 2 A1D1J C12 C3 C 0 1 N N N N N N -45.983 -33.838 -0.124 -4.046 -1.853 0.823 C12 A1D1J 3 A1D1J C1 C4 C 0 1 N N N N N N -44.317 -31.849 2.154 -1.909 -0.128 -0.245 C1 A1D1J 4 A1D1J C10 C5 C 0 1 N N N N N N -43.909 -31.076 -0.001 -3.287 1.649 -0.825 C10 A1D1J 5 A1D1J C2 C6 C 0 1 N N R N N N -43.947 -30.388 2.351 -1.016 0.885 -0.927 C2 A1D1J 6 A1D1J C3 C7 C 0 1 Y N N N N N -45.180 -29.452 4.338 1.301 0.213 -0.411 C3 A1D1J 7 A1D1J C4 C8 C 0 1 Y N N N N N -44.306 -29.476 6.493 2.241 -1.560 -1.549 C4 A1D1J 8 A1D1J C5 C9 C 0 1 Y N N N N N -46.477 -28.987 6.304 3.565 -0.518 0.018 C5 A1D1J 9 A1D1J C6 C10 C 0 1 Y N N N N N -48.552 -28.572 5.487 4.248 0.901 1.616 C6 A1D1J 10 A1D1J C7 C11 C 0 1 Y N N N N N -47.765 -28.838 4.392 2.986 1.267 1.339 C7 A1D1J 11 A1D1J C8 C12 C 0 1 Y N N N N N -46.443 -29.112 4.889 2.503 0.362 0.297 C8 A1D1J 12 A1D1J C9 C13 C 0 1 N N N N N N -43.603 -29.906 0.935 -1.843 2.191 -0.910 C9 A1D1J 13 A1D1J N1 N1 N 0 1 N N N N N N -45.015 -29.597 2.954 0.230 1.057 -0.176 N1 A1D1J 14 A1D1J N2 N2 N 0 1 Y N N N N N -44.128 -29.625 5.177 1.219 -0.756 -1.318 N2 A1D1J 15 A1D1J N3 N3 N 0 1 Y N N N N N -45.425 -29.166 7.152 3.385 -1.458 -0.909 N3 A1D1J 16 A1D1J N4 N4 N 0 1 Y N N N N N -47.773 -28.655 6.630 4.606 -0.165 0.832 N4 A1D1J 17 A1D1J N5 N5 N 0 1 N N N N N N -44.281 -32.185 0.858 -3.174 0.325 -0.201 N5 A1D1J 18 A1D1J O1 O1 O 0 1 N N N N N N -44.605 -32.590 3.093 -1.539 -1.197 0.193 O1 A1D1J 19 A1D1J H15 H1 H 0 1 N N N N N N -44.580 -34.298 -1.845 -3.289 -0.450 2.414 H15 A1D1J 20 A1D1J H14 H2 H 0 1 N N N N N N -45.067 -32.571 -1.766 -5.109 -0.745 2.469 H14 A1D1J 21 A1D1J H11 H3 H 0 1 N N N N N N -43.942 -34.299 0.596 -5.280 -0.156 0.008 H11 A1D1J 22 A1D1J H13 H4 H 0 1 N N N N N N -46.815 -33.148 0.081 -3.050 -2.264 0.656 H13 A1D1J 23 A1D1J H12 H5 H 0 1 N N N N N N -46.328 -34.875 0.002 -4.870 -2.558 0.712 H12 A1D1J 24 A1D1J H10 H6 H 0 1 N N N N N N -43.020 -31.334 -0.595 -3.900 2.306 -0.207 H10 A1D1J 25 A1D1J H9 H7 H 0 1 N N N N N N -44.739 -30.819 -0.676 -3.716 1.561 -1.823 H9 A1D1J 26 A1D1J H1 H8 H 0 1 N N N N N N -43.043 -30.329 2.974 -0.804 0.579 -1.951 H1 A1D1J 27 A1D1J H3 H9 H 0 1 N N N N N N -43.429 -29.626 7.104 2.132 -2.335 -2.294 H3 A1D1J 28 A1D1J H5 H10 H 0 1 N N N N N N -49.606 -28.337 5.461 4.886 1.377 2.346 H5 A1D1J 29 A1D1J H6 H11 H 0 1 N N N N N N -48.078 -28.841 3.358 2.434 2.074 1.797 H6 A1D1J 30 A1D1J H8 H12 H 0 1 N N N N N N -42.538 -29.636 0.872 -1.694 2.763 -1.826 H8 A1D1J 31 A1D1J H7 H13 H 0 1 N N N N N N -44.219 -29.034 0.669 -1.600 2.792 -0.033 H7 A1D1J 32 A1D1J H2 H14 H 0 1 N N N N N N -44.907 -28.671 2.593 0.305 1.763 0.485 H2 A1D1J 33 A1D1J H4 H15 H 0 1 N N N N N N -48.105 -28.496 7.560 5.470 -0.605 0.852 H4 A1D1J 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D1J C13 C12 SING N N 1 A1D1J C13 C11 SING N N 2 A1D1J C12 C11 SING N N 3 A1D1J C10 N5 SING N N 4 A1D1J C10 C9 SING N N 5 A1D1J C11 N5 SING N N 6 A1D1J N5 C1 SING N N 7 A1D1J C9 C2 SING N N 8 A1D1J C1 C2 SING N N 9 A1D1J C1 O1 DOUB N N 10 A1D1J C2 N1 SING N N 11 A1D1J N1 C3 SING N N 12 A1D1J C3 C8 DOUB Y N 13 A1D1J C3 N2 SING Y N 14 A1D1J C7 C8 SING Y N 15 A1D1J C7 C6 DOUB Y N 16 A1D1J C8 C5 SING Y N 17 A1D1J N2 C4 DOUB Y N 18 A1D1J C6 N4 SING Y N 19 A1D1J C5 N4 SING Y N 20 A1D1J C5 N3 DOUB Y N 21 A1D1J C4 N3 SING Y N 22 A1D1J C13 H15 SING N N 23 A1D1J C13 H14 SING N N 24 A1D1J C11 H11 SING N N 25 A1D1J C12 H13 SING N N 26 A1D1J C12 H12 SING N N 27 A1D1J C10 H10 SING N N 28 A1D1J C10 H9 SING N N 29 A1D1J C2 H1 SING N N 30 A1D1J C4 H3 SING N N 31 A1D1J C6 H5 SING N N 32 A1D1J C7 H6 SING N N 33 A1D1J C9 H8 SING N N 34 A1D1J C9 H7 SING N N 35 A1D1J N1 H2 SING N N 36 A1D1J N4 H4 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D1J SMILES ACDLabs 14.52 "O=C1C(Nc2ncnc3[NH]ccc32)CCN1C1CC1" A1D1J InChI InChI 1.06 "InChI=1S/C13H15N5O/c19-13-10(4-6-18(13)8-1-2-8)17-12-9-3-5-14-11(9)15-7-16-12/h3,5,7-8,10H,1-2,4,6H2,(H2,14,15,16,17)/t10-/m1/s1" A1D1J InChIKey InChI 1.06 FTQPXTQIXPJCGH-SNVBAGLBSA-N A1D1J SMILES_CANONICAL CACTVS 3.385 "O=C1[C@@H](CCN1C2CC2)Nc3ncnc4[nH]ccc34" A1D1J SMILES CACTVS 3.385 "O=C1[CH](CCN1C2CC2)Nc3ncnc4[nH]ccc34" A1D1J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N[C@@H]3CCN(C3=O)C4CC4" A1D1J SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC3CCN(C3=O)C4CC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D1J "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-1-cyclopropyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pyrrolidin-2-one" A1D1J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-1-cyclopropyl-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)pyrrolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D1J "Create component" 2026-09-01 RCSB A1D1J "Initial release" 2026-11-04 RCSB #