data_A1D1N # _chem_comp.id A1D1N _chem_comp.name "[(7R)-5-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-7-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.319 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D1N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15IG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D1N C13 C1 C 0 1 N N N N N N -42.821 -29.006 2.650 0.879 -2.673 0.337 C13 A1D1N 1 A1D1N C11 C2 C 0 1 N N N N N N -43.037 -31.113 3.006 0.256 -1.728 -1.458 C11 A1D1N 2 A1D1N C12 C3 C 0 1 N N N N N N -41.848 -30.160 2.899 -0.414 -2.725 -0.496 C12 A1D1N 3 A1D1N C1 C4 C 0 1 N N N N N N -46.236 -31.923 0.792 4.098 0.978 -0.038 C1 A1D1N 4 A1D1N C10 C5 C 0 1 N N N N N N -43.958 -30.027 2.386 1.117 -1.288 -0.271 C10 A1D1N 5 A1D1N C14 C6 C 0 1 N N N N N N -44.397 -30.181 0.939 2.582 -0.978 -0.615 C14 A1D1N 6 A1D1N C2 C7 C 0 1 N N R N N N -45.906 -30.434 0.969 2.977 0.065 0.465 C2 A1D1N 7 A1D1N C3 C8 C 0 1 N N N N N N -46.390 -29.834 2.298 1.655 0.855 0.638 C3 A1D1N 8 A1D1N C4 C9 C 0 1 Y N N N N N -45.281 -29.549 4.513 -0.536 0.375 -0.099 C4 A1D1N 9 A1D1N C5 C10 C 0 1 Y N N N N N -44.240 -29.557 6.592 -1.513 1.520 -1.847 C5 A1D1N 10 A1D1N C6 C11 C 0 1 Y N N N N N -46.417 -29.079 6.564 -2.912 0.813 -0.163 C6 A1D1N 11 A1D1N C7 C12 C 0 1 Y N N N N N -48.559 -28.663 5.943 -3.640 -0.129 1.739 C7 A1D1N 12 A1D1N C8 C13 C 0 1 Y N N N N N -47.871 -28.925 4.782 -2.314 -0.346 1.725 C8 A1D1N 13 A1D1N C9 C14 C 0 1 Y N N N N N -46.503 -29.201 5.154 -1.801 0.256 0.496 C9 A1D1N 14 A1D1N N1 N1 N 0 1 N N N N N N -45.192 -29.678 3.119 0.586 -0.161 0.507 N1 A1D1N 15 A1D1N N2 N2 N 0 1 Y N N N N N -44.162 -29.712 5.273 -0.444 1.012 -1.263 N2 A1D1N 16 A1D1N N3 N3 N 0 1 Y N N N N N -45.304 -29.247 7.326 -2.718 1.432 -1.326 N3 A1D1N 17 A1D1N N4 N4 N 0 1 Y N N N N N -47.677 -28.753 7.010 -4.009 0.563 0.615 N4 A1D1N 18 A1D1N O1 O1 O 0 1 N N N N N N -45.457 -32.458 -0.259 4.515 1.846 1.018 O1 A1D1N 19 A1D1N H15 H1 H 0 1 N N N N N N -42.566 -28.382 1.781 0.706 -2.655 1.413 H15 A1D1N 20 A1D1N H16 H2 H 0 1 N N N N N N -42.989 -28.362 3.526 1.620 -3.415 0.040 H16 A1D1N 21 A1D1N H11 H3 H 0 1 N N N N N N -43.300 -31.390 4.038 0.824 -2.206 -2.257 H11 A1D1N 22 A1D1N H12 H4 H 0 1 N N N N N N -42.940 -32.023 2.395 -0.418 -0.953 -1.823 H12 A1D1N 23 A1D1N H13 H5 H 0 1 N N N N N N -41.173 -30.372 2.057 -0.606 -3.700 -0.943 H13 A1D1N 24 A1D1N H14 H6 H 0 1 N N N N N N -41.261 -30.064 3.824 -1.282 -2.316 0.020 H14 A1D1N 25 A1D1N H3 H7 H 0 1 N N N N N N -47.303 -32.036 0.551 4.942 0.370 -0.364 H3 A1D1N 26 A1D1N H2 H8 H 0 1 N N N N N N -46.012 -32.461 1.725 3.734 1.573 -0.875 H2 A1D1N 27 A1D1N H17 H9 H 0 1 N N N N N N -43.878 -31.031 0.473 3.197 -1.874 -0.530 H17 A1D1N 28 A1D1N H18 H10 H 0 1 N N N N N N -44.176 -29.263 0.375 2.661 -0.548 -1.614 H18 A1D1N 29 A1D1N H4 H11 H 0 1 N N N N N N -46.371 -29.874 0.144 3.264 -0.425 1.395 H4 A1D1N 30 A1D1N H5 H12 H 0 1 N N N N N N -46.868 -28.858 2.127 1.617 1.320 1.624 H5 A1D1N 31 A1D1N H6 H13 H 0 1 N N N N N N -47.105 -30.512 2.787 1.559 1.610 -0.142 H6 A1D1N 32 A1D1N H7 H14 H 0 1 N N N N N N -43.319 -29.702 7.137 -1.394 2.030 -2.792 H7 A1D1N 33 A1D1N H9 H15 H 0 1 N N N N N N -49.610 -28.427 6.013 -4.314 -0.453 2.519 H9 A1D1N 34 A1D1N H10 H16 H 0 1 N N N N N N -48.277 -28.925 3.781 -1.739 -0.865 2.478 H10 A1D1N 35 A1D1N H8 H17 H 0 1 N N N N N N -47.922 -28.602 7.968 -4.915 0.836 0.402 H8 A1D1N 36 A1D1N H1 H18 H 0 1 N N N N N N -45.662 -33.379 -0.368 5.225 2.454 0.770 H1 A1D1N 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D1N O1 C1 SING N N 1 A1D1N C1 C2 SING N N 2 A1D1N C14 C2 SING N N 3 A1D1N C14 C10 SING N N 4 A1D1N C2 C3 SING N N 5 A1D1N C3 N1 SING N N 6 A1D1N C10 C13 SING N N 7 A1D1N C10 C11 SING N N 8 A1D1N C10 N1 SING N N 9 A1D1N C13 C12 SING N N 10 A1D1N C12 C11 SING N N 11 A1D1N N1 C4 SING N N 12 A1D1N C4 C9 DOUB Y N 13 A1D1N C4 N2 SING Y N 14 A1D1N C8 C9 SING Y N 15 A1D1N C8 C7 DOUB Y N 16 A1D1N C9 C6 SING Y N 17 A1D1N N2 C5 DOUB Y N 18 A1D1N C7 N4 SING Y N 19 A1D1N C6 N4 SING Y N 20 A1D1N C6 N3 DOUB Y N 21 A1D1N C5 N3 SING Y N 22 A1D1N C13 H15 SING N N 23 A1D1N C13 H16 SING N N 24 A1D1N C11 H11 SING N N 25 A1D1N C11 H12 SING N N 26 A1D1N C12 H13 SING N N 27 A1D1N C12 H14 SING N N 28 A1D1N C1 H3 SING N N 29 A1D1N C1 H2 SING N N 30 A1D1N C14 H17 SING N N 31 A1D1N C14 H18 SING N N 32 A1D1N C2 H4 SING N N 33 A1D1N C3 H5 SING N N 34 A1D1N C3 H6 SING N N 35 A1D1N C5 H7 SING N N 36 A1D1N C7 H9 SING N N 37 A1D1N C8 H10 SING N N 38 A1D1N N4 H8 SING N N 39 A1D1N O1 H1 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D1N SMILES ACDLabs 14.52 "OCC1CC2(CCC2)N(C1)c1ncnc2[NH]ccc12" A1D1N InChI InChI 1.06 "InChI=1S/C14H18N4O/c19-8-10-6-14(3-1-4-14)18(7-10)13-11-2-5-15-12(11)16-9-17-13/h2,5,9-10,19H,1,3-4,6-8H2,(H,15,16,17)/t10-/m1/s1" A1D1N InChIKey InChI 1.06 MONYDKCLAYYBRI-SNVBAGLBSA-N A1D1N SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1CN(c2ncnc3[nH]ccc23)C4(CCC4)C1" A1D1N SMILES CACTVS 3.385 "OC[CH]1CN(c2ncnc3[nH]ccc23)C4(CCC4)C1" A1D1N SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3C[C@@H](CC34CCC4)CO" A1D1N SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC(CC34CCC4)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D1N "SYSTEMATIC NAME" ACDLabs 14.52 "[(7R)-5-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-7-yl]methanol" A1D1N "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(7~{R})-5-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-7-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D1N "Create component" 2026-09-01 RCSB A1D1N "Initial release" 2026-11-04 RCSB #