data_A1D1T # _chem_comp.id A1D1T _chem_comp.name "N-{[(2S)-1,1-dioxo-1lambda~6~-thiolan-2-yl]methyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.330 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D1T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15FX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D1T C11 C1 C 0 1 Y N N N N N -48.206 -28.998 4.938 3.886 1.603 0.414 C11 A1D1T 1 A1D1T C12 C2 C 0 1 Y N N N N N -46.805 -29.209 5.182 3.284 0.328 0.044 C12 A1D1T 2 A1D1T C1 C3 C 0 1 N N N N N N -45.623 -29.565 2.931 0.836 0.820 -0.205 C1 A1D1T 3 A1D1T C10 C4 C 0 1 Y N N N N N -48.834 -28.807 6.137 5.206 1.385 0.558 C10 A1D1T 4 A1D1T C2 C5 C 0 1 N N N N N N -44.241 -29.637 0.880 -1.541 1.300 -0.446 C2 A1D1T 5 A1D1T C3 C6 C 0 1 N N S N N N -44.014 -28.298 0.150 -2.824 0.546 -0.800 C3 A1D1T 6 A1D1T C4 C7 C 0 1 N N N N N N -42.944 -27.383 0.752 -4.048 1.498 -0.768 C4 A1D1T 7 A1D1T C5 C8 C 0 1 N N N N N N -43.028 -26.051 -0.015 -5.296 0.607 -0.644 C5 A1D1T 8 A1D1T C6 C9 C 0 1 N N N N N N -44.506 -25.692 -0.258 -5.051 -0.434 0.467 C6 A1D1T 9 A1D1T C7 C10 C 0 1 Y N N N N N -45.618 -29.453 4.430 1.984 -0.115 -0.244 C7 A1D1T 10 A1D1T C8 C11 C 0 1 Y N N N N N -44.435 -29.506 6.429 2.829 -2.234 -0.590 C8 A1D1T 11 A1D1T C9 C12 C 0 1 Y N N N N N -46.633 -29.139 6.589 4.345 -0.608 -0.009 C9 A1D1T 12 A1D1T N1 N1 N 0 1 N N N N N N -44.433 -29.526 2.320 -0.405 0.375 -0.484 N1 A1D1T 13 A1D1T N2 N2 N 0 1 Y N N N N N -44.445 -29.596 5.099 1.810 -1.399 -0.553 N2 A1D1T 14 A1D1T N3 N3 N 0 1 Y N N N N N -45.458 -29.285 7.257 4.066 -1.864 -0.327 N3 A1D1T 15 A1D1T N4 N4 N 0 1 Y N N N N N -47.879 -28.898 7.130 5.492 0.070 0.308 N4 A1D1T 16 A1D1T O1 O1 O 0 1 N N N N N N -46.668 -29.699 2.305 1.013 1.988 0.080 O1 A1D1T 17 A1D1T O2 O2 O 0 1 N N N N N N -46.257 -27.580 -1.152 -2.932 -1.985 0.029 O2 A1D1T 18 A1D1T O3 O3 O 0 1 N N N N N N -46.166 -27.067 1.348 -2.726 -0.238 1.748 O3 A1D1T 19 A1D1T S1 S1 S 0 1 N N N N N N -45.496 -27.206 0.049 -3.239 -0.679 0.498 S1 A1D1T 20 A1D1T H14 H1 H 0 1 N N N N N N -48.683 -28.991 3.969 3.372 2.544 0.543 H14 A1D1T 21 A1D1T H13 H2 H 0 1 N N N N N N -49.888 -28.619 6.282 5.932 2.136 0.829 H13 A1D1T 22 A1D1T H3 H3 H 0 1 N N N N N N -45.136 -30.112 0.452 -1.380 2.102 -1.165 H3 A1D1T 23 A1D1T H2 H4 H 0 1 N N N N N N -43.364 -30.277 0.701 -1.632 1.722 0.555 H2 A1D1T 24 A1D1T H4 H5 H 0 1 N N N N N N -43.742 -28.514 -0.894 -2.733 0.066 -1.774 H4 A1D1T 25 A1D1T H6 H6 H 0 1 N N N N N N -41.947 -27.831 0.628 -3.979 2.166 0.091 H6 A1D1T 26 A1D1T H5 H7 H 0 1 N N N N N N -43.142 -27.219 1.822 -4.093 2.079 -1.689 H5 A1D1T 27 A1D1T H8 H8 H 0 1 N N N N N N -42.511 -26.151 -0.981 -6.160 1.220 -0.387 H8 A1D1T 28 A1D1T H7 H9 H 0 1 N N N N N N -42.550 -25.256 0.576 -5.477 0.096 -1.589 H7 A1D1T 29 A1D1T H10 H10 H 0 1 N N N N N N -44.817 -24.893 0.431 -5.398 -0.053 1.427 H10 A1D1T 30 A1D1T H9 H11 H 0 1 N N N N N N -44.645 -25.356 -1.296 -5.556 -1.370 0.226 H9 A1D1T 31 A1D1T H11 H12 H 0 1 N N N N N N -43.470 -29.628 6.899 2.641 -3.266 -0.845 H11 A1D1T 32 A1D1T H1 H13 H 0 1 N N N N N N -43.620 -29.413 2.891 -0.547 -0.558 -0.711 H1 A1D1T 33 A1D1T H12 H14 H 0 1 N N N N N N -48.065 -28.802 8.108 6.377 -0.324 0.350 H12 A1D1T 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D1T O2 S1 DOUB N N 1 A1D1T C6 C5 SING N N 2 A1D1T C6 S1 SING N N 3 A1D1T C5 C4 SING N N 4 A1D1T S1 C3 SING N N 5 A1D1T S1 O3 DOUB N N 6 A1D1T C3 C4 SING N N 7 A1D1T C3 C2 SING N N 8 A1D1T C2 N1 SING N N 9 A1D1T O1 C1 DOUB N N 10 A1D1T N1 C1 SING N N 11 A1D1T C1 C7 SING N N 12 A1D1T C7 N2 DOUB Y N 13 A1D1T C7 C12 SING Y N 14 A1D1T C11 C12 SING Y N 15 A1D1T C11 C10 DOUB Y N 16 A1D1T N2 C8 SING Y N 17 A1D1T C12 C9 DOUB Y N 18 A1D1T C10 N4 SING Y N 19 A1D1T C8 N3 DOUB Y N 20 A1D1T C9 N4 SING Y N 21 A1D1T C9 N3 SING Y N 22 A1D1T C11 H14 SING N N 23 A1D1T C10 H13 SING N N 24 A1D1T C2 H3 SING N N 25 A1D1T C2 H2 SING N N 26 A1D1T C3 H4 SING N N 27 A1D1T C4 H6 SING N N 28 A1D1T C4 H5 SING N N 29 A1D1T C5 H8 SING N N 30 A1D1T C5 H7 SING N N 31 A1D1T C6 H10 SING N N 32 A1D1T C6 H9 SING N N 33 A1D1T C8 H11 SING N N 34 A1D1T N1 H1 SING N N 35 A1D1T N4 H12 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D1T SMILES ACDLabs 14.52 "O=S1(=O)CCCC1CNC(=O)c1ncnc2[NH]ccc21" A1D1T InChI InChI 1.06 "InChI=1S/C12H14N4O3S/c17-12(14-6-8-2-1-5-20(8,18)19)10-9-3-4-13-11(9)16-7-15-10/h3-4,7-8H,1-2,5-6H2,(H,14,17)(H,13,15,16)/t8-/m0/s1" A1D1T InChIKey InChI 1.06 BVNCEQICFOAZTF-QMMMGPOBSA-N A1D1T SMILES_CANONICAL CACTVS 3.385 "O=C(NC[C@@H]1CCC[S]1(=O)=O)c2ncnc3[nH]ccc23" A1D1T SMILES CACTVS 3.385 "O=C(NC[CH]1CCC[S]1(=O)=O)c2ncnc3[nH]ccc23" A1D1T SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC[C@@H]3CCCS3(=O)=O" A1D1T SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NCC3CCCS3(=O)=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D1T "SYSTEMATIC NAME" ACDLabs 14.52 "N-{[(2S)-1,1-dioxo-1lambda~6~-thiolan-2-yl]methyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1D1T "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[[(2~{S})-1,1-bis(oxidanylidene)thiolan-2-yl]methyl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D1T "Create component" 2026-09-01 RCSB A1D1T "Initial release" 2026-11-04 RCSB #