data_A1D1Y # _chem_comp.id A1D1Y _chem_comp.name "N-[(2H-1,3-benzodioxol-5-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H12 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 296.281 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D1Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15IA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D1Y C13 C1 C 0 1 Y N N N N N -48.917 -28.615 5.885 5.891 1.039 -0.360 C13 A1D1Y 1 A1D1Y C15 C2 C 0 1 Y N N N N N -46.956 -29.079 4.855 3.840 0.146 -0.094 C15 A1D1Y 2 A1D1Y C11 C3 C 0 1 Y N N N N N -44.539 -29.446 6.006 3.093 -2.393 0.313 C11 A1D1Y 3 A1D1Y C12 C4 C 0 1 Y N N N N N -46.720 -29.002 6.252 4.800 -0.891 -0.021 C12 A1D1Y 4 A1D1Y C1 C5 C 0 1 N N N N N N -45.890 -29.520 2.578 1.436 0.861 -0.017 C1 A1D1Y 5 A1D1Y C10 C6 C 0 1 Y N N N N N -45.806 -29.362 4.064 2.484 -0.183 0.051 C10 A1D1Y 6 A1D1Y C14 C7 C 0 1 Y N N N N N -48.360 -28.819 4.648 4.590 1.378 -0.311 C14 A1D1Y 7 A1D1Y C2 C8 C 0 1 N N N N N N -44.740 -30.669 0.679 -0.898 1.557 0.057 C2 A1D1Y 8 A1D1Y C3 C9 C 0 1 Y N N N N N -45.403 -32.016 0.416 -2.252 0.923 0.244 C3 A1D1Y 9 A1D1Y C4 C10 C 0 1 Y N N N N N -46.577 -32.357 1.140 -2.785 0.798 1.513 C4 A1D1Y 10 A1D1Y C5 C11 C 0 1 Y N N N N N -47.230 -33.588 0.942 -4.027 0.216 1.690 C5 A1D1Y 11 A1D1Y C6 C12 C 0 1 Y N N N N N -46.671 -34.464 0.007 -4.741 -0.241 0.595 C6 A1D1Y 12 A1D1Y C7 C13 C 0 1 Y N N N N N -45.526 -34.152 -0.699 -4.203 -0.115 -0.684 C7 A1D1Y 13 A1D1Y C8 C14 C 0 1 Y N N N N N -44.858 -32.929 -0.517 -2.961 0.474 -0.854 C8 A1D1Y 14 A1D1Y C9 C15 C 0 1 N N N N N N -46.161 -36.184 -1.260 -6.345 -0.717 -0.881 C9 A1D1Y 15 A1D1Y N1 N1 N 0 1 N N N N N N -44.912 -30.289 2.071 0.139 0.524 0.125 N1 A1D1Y 16 A1D1Y N2 N2 N 0 1 Y N N N N N -44.610 -29.547 4.677 2.164 -1.461 0.252 N2 A1D1Y 17 A1D1Y N3 N3 N 0 1 Y N N N N N -45.524 -29.185 6.870 4.378 -2.131 0.183 N3 A1D1Y 18 A1D1Y N4 N4 N 0 1 Y N N N N N -47.930 -28.722 6.848 6.029 -0.312 -0.192 N4 A1D1Y 19 A1D1Y O1 O1 O 0 1 N N N N N N -46.812 -29.048 1.915 1.746 2.022 -0.201 O1 A1D1Y 20 A1D1Y O2 O2 O 0 1 N N N N N N -45.216 -35.182 -1.529 -5.090 -0.633 -1.583 O2 A1D1Y 21 A1D1Y O3 O3 O 0 1 N N N N N N -47.113 -35.692 -0.353 -5.963 -0.841 0.497 O3 A1D1Y 22 A1D1Y H11 H1 H 0 1 N N N N N N -49.959 -28.405 6.076 6.706 1.731 -0.515 H11 A1D1Y 23 A1D1Y H9 H2 H 0 1 N N N N N N -43.560 -29.594 6.438 2.789 -3.416 0.478 H9 A1D1Y 24 A1D1Y H12 H3 H 0 1 N N N N N N -48.875 -28.790 3.699 4.179 2.372 -0.412 H12 A1D1Y 25 A1D1Y H3 H4 H 0 1 N N N N N N -43.666 -30.742 0.452 -0.858 2.049 -0.915 H3 A1D1Y 26 A1D1Y H2 H5 H 0 1 N N N N N N -45.200 -29.906 0.034 -0.729 2.293 0.843 H2 A1D1Y 27 A1D1Y H4 H6 H 0 1 N N N N N N -46.977 -31.656 1.858 -2.230 1.154 2.368 H4 A1D1Y 28 A1D1Y H5 H7 H 0 1 N N N N N N -48.125 -33.845 1.489 -4.441 0.119 2.683 H5 A1D1Y 29 A1D1Y H6 H8 H 0 1 N N N N N N -43.960 -32.695 -1.070 -2.542 0.573 -1.845 H6 A1D1Y 30 A1D1Y H8 H9 H 0 1 N N N N N N -46.661 -36.478 -2.195 -6.922 0.195 -1.037 H8 A1D1Y 31 A1D1Y H7 H10 H 0 1 N N N N N N -45.656 -37.058 -0.824 -6.914 -1.589 -1.201 H7 A1D1Y 32 A1D1Y H1 H11 H 0 1 N N N N N N -44.233 -30.635 2.718 -0.108 -0.402 0.272 H1 A1D1Y 33 A1D1Y H10 H12 H 0 1 N N N N N N -48.074 -28.612 7.832 6.874 -0.789 -0.194 H10 A1D1Y 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D1Y O2 C9 SING N N 1 A1D1Y O2 C7 SING N N 2 A1D1Y C9 O3 SING N N 3 A1D1Y C7 C8 DOUB Y N 4 A1D1Y C7 C6 SING Y N 5 A1D1Y C8 C3 SING Y N 6 A1D1Y O3 C6 SING N N 7 A1D1Y C6 C5 DOUB Y N 8 A1D1Y C3 C2 SING N N 9 A1D1Y C3 C4 DOUB Y N 10 A1D1Y C2 N1 SING N N 11 A1D1Y C5 C4 SING Y N 12 A1D1Y O1 C1 DOUB N N 13 A1D1Y N1 C1 SING N N 14 A1D1Y C1 C10 SING N N 15 A1D1Y C10 N2 DOUB Y N 16 A1D1Y C10 C15 SING Y N 17 A1D1Y C14 C15 SING Y N 18 A1D1Y C14 C13 DOUB Y N 19 A1D1Y N2 C11 SING Y N 20 A1D1Y C15 C12 DOUB Y N 21 A1D1Y C13 N4 SING Y N 22 A1D1Y C11 N3 DOUB Y N 23 A1D1Y C12 N4 SING Y N 24 A1D1Y C12 N3 SING Y N 25 A1D1Y C13 H11 SING N N 26 A1D1Y C11 H9 SING N N 27 A1D1Y C14 H12 SING N N 28 A1D1Y C2 H3 SING N N 29 A1D1Y C2 H2 SING N N 30 A1D1Y C4 H4 SING N N 31 A1D1Y C5 H5 SING N N 32 A1D1Y C8 H6 SING N N 33 A1D1Y C9 H8 SING N N 34 A1D1Y C9 H7 SING N N 35 A1D1Y N1 H1 SING N N 36 A1D1Y N4 H10 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D1Y SMILES ACDLabs 14.52 "O=C(NCc1ccc2OCOc2c1)c1ncnc2[NH]ccc21" A1D1Y InChI InChI 1.06 "InChI=1S/C15H12N4O3/c20-15(13-10-3-4-16-14(10)19-7-18-13)17-6-9-1-2-11-12(5-9)22-8-21-11/h1-5,7H,6,8H2,(H,17,20)(H,16,18,19)" A1D1Y InChIKey InChI 1.06 WHJDAFFWMWOKMX-UHFFFAOYSA-N A1D1Y SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1ccc2OCOc2c1)c3ncnc4[nH]ccc34" A1D1Y SMILES CACTVS 3.385 "O=C(NCc1ccc2OCOc2c1)c3ncnc4[nH]ccc34" A1D1Y SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1CNC(=O)c3c4cc[nH]c4ncn3)OCO2" A1D1Y SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1CNC(=O)c3c4cc[nH]c4ncn3)OCO2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D1Y "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(2H-1,3-benzodioxol-5-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1D1Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(1,3-benzodioxol-5-ylmethyl)-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D1Y "Create component" 2026-09-01 RCSB A1D1Y "Initial release" 2026-11-04 RCSB #