data_A1D24 # _chem_comp.id A1D24 _chem_comp.name "3-[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-3-yl]-1,3-oxazolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 273.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D24 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D24 C13 C1 C 0 1 N N N N N N -44.359 -29.179 2.031 0.776 0.910 0.108 C13 A1D24 1 A1D24 C11 C2 C 0 1 Y N N N N N -48.183 -28.998 4.714 -2.951 -1.793 -0.027 C11 A1D24 2 A1D24 C12 C3 C 0 1 Y N N N N N -46.777 -29.169 4.989 -2.683 -0.358 -0.102 C12 A1D24 3 A1D24 C1 C4 C 0 1 N N N N N N -46.183 -27.443 -0.811 3.315 -0.558 -0.723 C1 A1D24 4 A1D24 C10 C5 C 0 1 Y N N N N N -48.829 -28.922 5.923 -4.281 -1.945 -0.131 C10 A1D24 5 A1D24 C2 C6 C 0 1 N N N N N N -44.919 -25.558 -0.379 5.384 0.352 -0.402 C2 A1D24 6 A1D24 C3 C7 C 0 1 N N N N N N -44.307 -26.713 0.400 4.413 0.889 0.668 C3 A1D24 7 A1D24 C4 C8 C 0 1 N N R N N N -44.901 -29.164 0.584 1.877 0.419 1.067 C4 A1D24 8 A1D24 C5 C9 C 0 1 N N N N N N -46.171 -30.036 0.649 1.365 -0.937 1.607 C5 A1D24 9 A1D24 C6 C10 C 0 1 N N N N N N -46.636 -29.928 2.092 -0.166 -0.843 1.385 C6 A1D24 10 A1D24 C7 C11 C 0 1 Y N N N N N -45.567 -29.309 4.247 -1.530 0.442 -0.057 C7 A1D24 11 A1D24 C8 C12 C 0 1 Y N N N N N -44.413 -29.455 6.266 -2.867 2.307 -0.299 C8 A1D24 12 A1D24 C9 C13 C 0 1 Y N N N N N -46.629 -29.191 6.400 -3.933 0.268 -0.252 C9 A1D24 13 A1D24 N1 N1 N 0 1 N N N N N N -45.157 -27.822 0.046 3.137 0.234 0.343 N1 A1D24 14 A1D24 N2 N2 N 0 1 N N N N N N -45.557 -29.304 2.840 -0.278 -0.127 0.088 N2 A1D24 15 A1D24 N3 N3 N 0 1 Y N N N N N -44.396 -29.445 4.929 -1.673 1.760 -0.159 N3 A1D24 16 A1D24 N4 N4 N 0 1 Y N N N N N -45.463 -29.335 7.081 -3.973 1.597 -0.346 N4 A1D24 17 A1D24 N5 N5 N 0 1 Y N N N N N -47.891 -29.044 6.932 -4.880 -0.719 -0.266 N5 A1D24 18 A1D24 O1 O1 O 0 1 N N N N N N -47.127 -28.109 -1.233 2.422 -1.222 -1.212 O1 A1D24 19 A1D24 O2 O2 O 0 1 N N N N N N -45.975 -26.155 -1.115 4.563 -0.546 -1.204 O2 A1D24 20 A1D24 H15 H1 H 0 1 N N N N N N -43.686 -30.035 2.190 0.364 1.852 0.468 H15 A1D24 21 A1D24 H14 H2 H 0 1 N N N N N N -43.825 -28.245 2.261 1.185 1.043 -0.894 H14 A1D24 22 A1D24 H13 H3 H 0 1 N N N N N N -48.642 -28.940 3.738 -2.220 -2.580 0.085 H13 A1D24 23 A1D24 H12 H4 H 0 1 N N N N N N -49.892 -28.789 6.063 -4.802 -2.891 -0.111 H12 A1D24 24 A1D24 H2 H5 H 0 1 N N N N N N -44.178 -25.108 -1.056 5.772 1.169 -1.010 H2 A1D24 25 A1D24 H1 H6 H 0 1 N N N N N N -45.307 -24.788 0.305 6.201 -0.198 0.065 H1 A1D24 26 A1D24 H4 H7 H 0 1 N N N N N N -43.268 -26.895 0.088 4.747 0.603 1.665 H4 A1D24 27 A1D24 H3 H8 H 0 1 N N N N N N -44.337 -26.521 1.483 4.321 1.972 0.592 H3 A1D24 28 A1D24 H5 H9 H 0 1 N N N N N N -44.169 -29.674 -0.059 2.009 1.126 1.885 H5 A1D24 29 A1D24 H7 H10 H 0 1 N N N N N N -46.941 -29.653 -0.037 1.787 -1.764 1.036 H7 A1D24 30 A1D24 H6 H11 H 0 1 N N N N N N -45.939 -31.080 0.393 1.595 -1.041 2.667 H6 A1D24 31 A1D24 H8 H12 H 0 1 N N N N N N -47.544 -29.310 2.151 -0.606 -1.837 1.315 H8 A1D24 32 A1D24 H9 H13 H 0 1 N N N N N N -46.847 -30.929 2.497 -0.635 -0.268 2.184 H9 A1D24 33 A1D24 H10 H14 H 0 1 N N N N N N -43.454 -29.576 6.748 -2.938 3.382 -0.379 H10 A1D24 34 A1D24 H11 H15 H 0 1 N N N N N N -48.100 -29.028 7.910 -5.834 -0.573 -0.358 H11 A1D24 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D24 O1 C1 DOUB N N 1 A1D24 O2 C1 SING N N 2 A1D24 O2 C2 SING N N 3 A1D24 C1 N1 SING N N 4 A1D24 C2 C3 SING N N 5 A1D24 N1 C3 SING N N 6 A1D24 N1 C4 SING N N 7 A1D24 C4 C5 SING N N 8 A1D24 C4 C13 SING N N 9 A1D24 C5 C6 SING N N 10 A1D24 C13 N2 SING N N 11 A1D24 C6 N2 SING N N 12 A1D24 N2 C7 SING N N 13 A1D24 C7 N3 DOUB Y N 14 A1D24 C7 C12 SING Y N 15 A1D24 C11 C12 SING Y N 16 A1D24 C11 C10 DOUB Y N 17 A1D24 N3 C8 SING Y N 18 A1D24 C12 C9 DOUB Y N 19 A1D24 C10 N5 SING Y N 20 A1D24 C8 N4 DOUB Y N 21 A1D24 C9 N5 SING Y N 22 A1D24 C9 N4 SING Y N 23 A1D24 C13 H15 SING N N 24 A1D24 C13 H14 SING N N 25 A1D24 C11 H13 SING N N 26 A1D24 C10 H12 SING N N 27 A1D24 C2 H2 SING N N 28 A1D24 C2 H1 SING N N 29 A1D24 C3 H4 SING N N 30 A1D24 C3 H3 SING N N 31 A1D24 C4 H5 SING N N 32 A1D24 C5 H7 SING N N 33 A1D24 C5 H6 SING N N 34 A1D24 C6 H8 SING N N 35 A1D24 C6 H9 SING N N 36 A1D24 C8 H10 SING N N 37 A1D24 N5 H11 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D24 SMILES ACDLabs 14.52 "O=C1OCCN1C1CN(CC1)c1ncnc2[NH]ccc21" A1D24 InChI InChI 1.06 "InChI=1S/C13H15N5O2/c19-13-18(5-6-20-13)9-2-4-17(7-9)12-10-1-3-14-11(10)15-8-16-12/h1,3,8-9H,2,4-7H2,(H,14,15,16)/t9-/m1/s1" A1D24 InChIKey InChI 1.06 BNWYHJUNYZXSRC-SECBINFHSA-N A1D24 SMILES_CANONICAL CACTVS 3.385 "O=C1OCCN1[C@@H]2CCN(C2)c3ncnc4[nH]ccc34" A1D24 SMILES CACTVS 3.385 "O=C1OCCN1[CH]2CCN(C2)c3ncnc4[nH]ccc34" A1D24 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@H](C3)N4CCOC4=O" A1D24 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC(C3)N4CCOC4=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D24 "SYSTEMATIC NAME" ACDLabs 14.52 "3-[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-3-yl]-1,3-oxazolidin-2-one" A1D24 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[(3~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-3-yl]-1,3-oxazolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D24 "Create component" 2026-09-01 RCSB A1D24 "Initial release" 2026-11-04 RCSB #