data_A1D25 # _chem_comp.id A1D25 _chem_comp.name "4-(1-azaspiro[3.3]heptan-1-yl)-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 214.266 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D25 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D25 C11 C1 C 0 1 Y N N N N N -48.612 -28.746 5.888 2.706 -1.790 -0.624 C11 A1D25 1 A1D25 C12 C2 C 0 1 Y N N N N N -46.426 -29.094 6.390 2.300 0.276 0.150 C12 A1D25 2 A1D25 C1 C3 C 0 1 Y N N N N N -44.243 -29.486 6.268 1.207 2.236 0.662 C1 A1D25 3 A1D25 C10 C4 C 0 1 Y N N N N N -47.971 -28.949 4.688 1.419 -1.550 -0.924 C10 A1D25 4 A1D25 C2 C5 C 0 1 Y N N N N N -45.396 -29.446 4.223 -0.021 0.617 -0.432 C2 A1D25 5 A1D25 C3 C6 C 0 1 N N N N N N -46.525 -30.242 2.149 -2.163 1.306 -1.135 C3 A1D25 6 A1D25 C4 C7 C 0 1 N N N N N N -45.518 -30.647 1.074 -3.270 0.360 -0.646 C4 A1D25 7 A1D25 C5 C8 C 0 1 N N N N N N -44.405 -30.320 2.080 -2.105 -0.365 0.028 C5 A1D25 8 A1D25 C6 C9 C 0 1 N N N N N N -43.554 -31.442 2.702 -1.815 -0.171 1.518 C6 A1D25 9 A1D25 C7 C10 C 0 1 N N N N N N -42.426 -31.074 1.737 -1.258 -1.606 1.509 C7 A1D25 10 A1D25 C8 C11 C 0 1 N N N N N N -43.088 -29.706 1.562 -2.164 -1.871 0.294 C8 A1D25 11 A1D25 C9 C12 C 0 1 Y N N N N N -46.578 -29.178 4.978 1.115 -0.207 -0.434 C9 A1D25 12 A1D25 N1 N1 N 0 1 Y N N N N N -44.244 -29.587 4.937 0.074 1.821 0.124 N1 A1D25 13 A1D25 N2 N2 N 0 1 N N N N N N -45.419 -29.539 2.797 -1.210 0.188 -0.994 N2 A1D25 14 A1D25 N3 N3 N 0 1 Y N N N N N -47.677 -28.833 6.906 3.243 -0.706 0.019 N3 A1D25 15 A1D25 N4 N4 N 0 1 Y N N N N N -45.268 -29.247 7.086 2.296 1.498 0.682 N4 A1D25 16 A1D25 H13 H1 H 0 1 N N N N N N -49.667 -28.552 6.015 3.236 -2.704 -0.850 H13 A1D25 17 A1D25 H1 H2 H 0 1 N N N N N N -43.283 -29.615 6.746 1.242 3.221 1.102 H1 A1D25 18 A1D25 H12 H3 H 0 1 N N N N N N -48.427 -28.939 3.709 0.740 -2.220 -1.431 H12 A1D25 19 A1D25 H3 H4 H 0 1 N N N N N N -47.341 -29.594 1.797 -2.297 1.634 -2.166 H3 A1D25 20 A1D25 H2 H5 H 0 1 N N N N N N -46.944 -31.078 2.728 -1.965 2.133 -0.453 H2 A1D25 21 A1D25 H5 H6 H 0 1 N N N N N N -45.526 -30.011 0.177 -3.974 0.817 0.049 H5 A1D25 22 A1D25 H4 H7 H 0 1 N N N N N N -45.568 -31.704 0.774 -3.753 -0.212 -1.439 H4 A1D25 23 A1D25 H6 H8 H 0 1 N N N N N N -43.962 -32.454 2.559 -1.062 0.590 1.722 H6 A1D25 24 A1D25 H7 H9 H 0 1 N N N N N N -43.310 -31.291 3.764 -2.712 -0.053 2.127 H7 A1D25 25 A1D25 H9 H10 H 0 1 N N N N N N -42.391 -31.684 0.822 -0.194 -1.658 1.279 H9 A1D25 26 A1D25 H8 H11 H 0 1 N N N N N N -41.426 -31.042 2.195 -1.529 -2.185 2.392 H8 A1D25 27 A1D25 H10 H12 H 0 1 N N N N N N -42.672 -28.914 2.203 -3.158 -2.230 0.560 H10 A1D25 28 A1D25 H11 H13 H 0 1 N N N N N N -43.130 -29.351 0.522 -1.690 -2.471 -0.483 H11 A1D25 29 A1D25 H14 H14 H 0 1 N N N N N N -47.881 -28.722 7.879 4.158 -0.644 0.338 H14 A1D25 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D25 C4 C5 SING N N 1 A1D25 C4 C3 SING N N 2 A1D25 C8 C7 SING N N 3 A1D25 C8 C5 SING N N 4 A1D25 C7 C6 SING N N 5 A1D25 C5 C6 SING N N 6 A1D25 C5 N2 SING N N 7 A1D25 C3 N2 SING N N 8 A1D25 N2 C2 SING N N 9 A1D25 C2 N1 DOUB Y N 10 A1D25 C2 C9 SING Y N 11 A1D25 C10 C9 SING Y N 12 A1D25 C10 C11 DOUB Y N 13 A1D25 N1 C1 SING Y N 14 A1D25 C9 C12 DOUB Y N 15 A1D25 C11 N3 SING Y N 16 A1D25 C1 N4 DOUB Y N 17 A1D25 C12 N3 SING Y N 18 A1D25 C12 N4 SING Y N 19 A1D25 C11 H13 SING N N 20 A1D25 C1 H1 SING N N 21 A1D25 C10 H12 SING N N 22 A1D25 C3 H3 SING N N 23 A1D25 C3 H2 SING N N 24 A1D25 C4 H5 SING N N 25 A1D25 C4 H4 SING N N 26 A1D25 C6 H6 SING N N 27 A1D25 C6 H7 SING N N 28 A1D25 C7 H9 SING N N 29 A1D25 C7 H8 SING N N 30 A1D25 C8 H10 SING N N 31 A1D25 C8 H11 SING N N 32 A1D25 N3 H14 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D25 SMILES ACDLabs 14.52 "n1cnc2[NH]ccc2c1N1CCC21CCC2" A1D25 InChI InChI 1.06 "InChI=1S/C12H14N4/c1-3-12(4-1)5-7-16(12)11-9-2-6-13-10(9)14-8-15-11/h2,6,8H,1,3-5,7H2,(H,13,14,15)" A1D25 InChIKey InChI 1.06 PIWCMROPIQPMBV-UHFFFAOYSA-N A1D25 SMILES_CANONICAL CACTVS 3.385 "C1CC2(C1)CCN2c3ncnc4[nH]ccc34" A1D25 SMILES CACTVS 3.385 "C1CC2(C1)CCN2c3ncnc4[nH]ccc34" A1D25 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC34CCC4" A1D25 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC34CCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D25 "SYSTEMATIC NAME" ACDLabs 14.52 "4-(1-azaspiro[3.3]heptan-1-yl)-7H-pyrrolo[2,3-d]pyrimidine" A1D25 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-(1-azaspiro[3.3]heptan-1-yl)-7~{H}-pyrrolo[2,3-d]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D25 "Create component" 2026-09-01 RCSB A1D25 "Initial release" 2026-11-04 RCSB #