data_A1D28 # _chem_comp.id A1D28 _chem_comp.name "2-[(3S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1lambda~6~,2-thiazolidine-1,1-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H19 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 321.398 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D28 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D28 C13 C1 C 0 1 Y N N N N N -46.327 -29.570 4.751 -2.898 0.342 0.016 C13 A1D28 1 A1D28 C11 C2 C 0 1 Y N N N N N -48.427 -28.861 5.259 -4.273 2.085 0.398 C11 A1D28 2 A1D28 C12 C3 C 0 1 Y N N N N N -47.645 -29.315 4.219 -3.032 1.645 0.663 C12 A1D28 3 A1D28 C1 C4 C 0 1 N N N N N N -44.711 -26.118 -0.487 3.513 1.759 -1.285 C1 A1D28 4 A1D28 C10 C5 C 0 1 Y N N N N N -46.375 -29.256 6.137 -4.129 0.088 -0.617 C10 A1D28 5 A1D28 C14 C6 C 0 1 N N N N N N -45.704 -30.273 1.869 0.246 -1.553 0.281 C14 A1D28 6 A1D28 C2 C7 C 0 1 N N N N N N -43.658 -26.371 0.602 1.970 1.963 -1.254 C2 A1D28 7 A1D28 C3 C8 C 0 1 N N N N N N -43.453 -27.894 0.749 1.520 1.260 0.041 C3 A1D28 8 A1D28 C4 C9 C 0 1 N N S N N N -44.975 -29.993 0.541 1.635 -1.232 0.838 C4 A1D28 9 A1D28 C5 C10 C 0 1 N N N N N N -43.675 -30.790 0.284 1.526 -0.953 2.340 C5 A1D28 10 A1D28 C6 C11 C 0 1 N N N N N N -43.265 -31.751 1.405 0.547 0.202 2.566 C6 A1D28 11 A1D28 C7 C12 C 0 1 N N N N N N -43.582 -31.275 2.832 -0.811 -0.160 1.959 C7 A1D28 12 A1D28 C8 C13 C 0 1 Y N N N N N -45.059 -30.035 4.288 -1.880 -0.619 -0.083 C8 A1D28 13 A1D28 C9 C14 C 0 1 Y N N N N N -44.236 -29.798 6.457 -3.296 -1.926 -1.352 C9 A1D28 14 A1D28 N1 N1 N 0 1 N N N N N N -44.721 -28.548 0.406 2.174 -0.052 0.159 N1 A1D28 15 A1D28 N2 N2 N 0 1 N N N N N N -44.758 -30.416 2.969 -0.653 -0.417 0.522 N2 A1D28 16 A1D28 N3 N3 N 0 1 Y N N N N N -44.035 -30.133 5.180 -2.125 -1.729 -0.773 N3 A1D28 17 A1D28 N4 N4 N 0 1 Y N N N N N -45.357 -29.356 7.022 -4.277 -1.052 -1.289 N4 A1D28 18 A1D28 N5 N5 N 0 1 Y N N N N N -47.657 -28.837 6.412 -4.939 1.162 -0.367 N5 A1D28 19 A1D28 O1 O1 O 0 1 N N N N N N -46.709 -27.039 1.034 3.580 -0.910 -1.671 O1 A1D28 20 A1D28 O2 O2 O 0 1 N N N N N N -46.591 -27.942 -1.308 4.621 -0.029 0.403 O2 A1D28 21 A1D28 S1 S1 S 0 1 N N N N N N -45.894 -27.450 -0.119 3.645 0.052 -0.627 S1 A1D28 22 A1D28 H16 H1 H 0 1 N N N N N N -49.465 -28.572 5.188 -4.686 3.023 0.737 H16 A1D28 23 A1D28 H17 H2 H 0 1 N N N N N N -47.960 -29.454 3.195 -2.279 2.157 1.243 H17 A1D28 24 A1D28 H2 H3 H 0 1 N N N N N N -44.285 -26.221 -1.496 3.897 1.819 -2.303 H2 A1D28 25 A1D28 H1 H4 H 0 1 N N N N N N -45.172 -25.125 -0.383 4.017 2.472 -0.634 H1 A1D28 26 A1D28 H19 H5 H 0 1 N N N N N N -46.385 -29.437 2.088 0.319 -1.738 -0.790 H19 A1D28 27 A1D28 H18 H6 H 0 1 N N N N N N -46.284 -31.203 1.771 -0.148 -2.439 0.777 H18 A1D28 28 A1D28 H4 H7 H 0 1 N N N N N N -42.708 -25.896 0.316 1.727 3.025 -1.215 H4 A1D28 29 A1D28 H3 H8 H 0 1 N N N N N N -44.005 -25.950 1.557 1.506 1.495 -2.122 H3 A1D28 30 A1D28 H5 H9 H 0 1 N N N N N N -43.174 -28.137 1.785 1.790 1.876 0.899 H5 A1D28 31 A1D28 H6 H10 H 0 1 N N N N N N -42.660 -28.233 0.067 0.439 1.123 0.021 H6 A1D28 32 A1D28 H7 H11 H 0 1 N N N N N N -45.673 -30.275 -0.261 2.298 -2.082 0.673 H7 A1D28 33 A1D28 H8 H12 H 0 1 N N N N N N -43.813 -31.379 -0.635 1.162 -1.845 2.851 H8 A1D28 34 A1D28 H9 H13 H 0 1 N N N N N N -42.857 -30.069 0.138 2.506 -0.682 2.732 H9 A1D28 35 A1D28 H11 H14 H 0 1 N N N N N N -43.788 -32.705 1.242 0.432 0.377 3.636 H11 A1D28 36 A1D28 H10 H15 H 0 1 N N N N N N -42.179 -31.911 1.334 0.931 1.103 2.088 H10 A1D28 37 A1D28 H13 H16 H 0 1 N N N N N N -43.740 -32.166 3.458 -1.200 -1.053 2.447 H13 A1D28 38 A1D28 H12 H17 H 0 1 N N N N N N -42.710 -30.716 3.203 -1.506 0.667 2.106 H12 A1D28 39 A1D28 H14 H18 H 0 1 N N N N N N -43.383 -29.898 7.112 -3.452 -2.840 -1.906 H14 A1D28 40 A1D28 H15 H19 H 0 1 N N N N N N -47.986 -28.556 7.314 -5.851 1.256 -0.684 H15 A1D28 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D28 O2 S1 DOUB N N 1 A1D28 C1 S1 SING N N 2 A1D28 C1 C2 SING N N 3 A1D28 S1 N1 SING N N 4 A1D28 S1 O1 DOUB N N 5 A1D28 C5 C4 SING N N 6 A1D28 C5 C6 SING N N 7 A1D28 N1 C4 SING N N 8 A1D28 N1 C3 SING N N 9 A1D28 C4 C14 SING N N 10 A1D28 C2 C3 SING N N 11 A1D28 C6 C7 SING N N 12 A1D28 C14 N2 SING N N 13 A1D28 C7 N2 SING N N 14 A1D28 N2 C8 SING N N 15 A1D28 C12 C13 SING Y N 16 A1D28 C12 C11 DOUB Y N 17 A1D28 C8 C13 DOUB Y N 18 A1D28 C8 N3 SING Y N 19 A1D28 C13 C10 SING Y N 20 A1D28 N3 C9 DOUB Y N 21 A1D28 C11 N5 SING Y N 22 A1D28 C10 N5 SING Y N 23 A1D28 C10 N4 DOUB Y N 24 A1D28 C9 N4 SING Y N 25 A1D28 C11 H16 SING N N 26 A1D28 C12 H17 SING N N 27 A1D28 C1 H2 SING N N 28 A1D28 C1 H1 SING N N 29 A1D28 C14 H19 SING N N 30 A1D28 C14 H18 SING N N 31 A1D28 C2 H4 SING N N 32 A1D28 C2 H3 SING N N 33 A1D28 C3 H5 SING N N 34 A1D28 C3 H6 SING N N 35 A1D28 C4 H7 SING N N 36 A1D28 C5 H8 SING N N 37 A1D28 C5 H9 SING N N 38 A1D28 C6 H11 SING N N 39 A1D28 C6 H10 SING N N 40 A1D28 C7 H13 SING N N 41 A1D28 C7 H12 SING N N 42 A1D28 C9 H14 SING N N 43 A1D28 N5 H15 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D28 SMILES ACDLabs 14.52 "O=S1(=O)CCCN1C1CN(CCC1)c1ncnc2[NH]ccc21" A1D28 InChI InChI 1.06 "InChI=1S/C14H19N5O2S/c20-22(21)8-2-7-19(22)11-3-1-6-18(9-11)14-12-4-5-15-13(12)16-10-17-14/h4-5,10-11H,1-3,6-9H2,(H,15,16,17)/t11-/m0/s1" A1D28 InChIKey InChI 1.06 GKBLRZMJCHKEOP-NSHDSACASA-N A1D28 SMILES_CANONICAL CACTVS 3.385 "O=[S]1(=O)CCCN1[C@H]2CCCN(C2)c3ncnc4[nH]ccc34" A1D28 SMILES CACTVS 3.385 "O=[S]1(=O)CCCN1[CH]2CCCN(C2)c3ncnc4[nH]ccc34" A1D28 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC[C@@H](C3)N4CCCS4(=O)=O" A1D28 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCCC(C3)N4CCCS4(=O)=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D28 "SYSTEMATIC NAME" ACDLabs 14.52 "2-[(3S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1lambda~6~,2-thiazolidine-1,1-dione" A1D28 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(3~{S})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1,2-thiazolidine 1,1-dioxide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D28 "Create component" 2026-09-01 RCSB A1D28 "Initial release" 2026-11-04 RCSB #