data_A1D2F # _chem_comp.id A1D2F _chem_comp.name "N-[(6,7-dihydro-5H-cyclopenta[b]pyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H15 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 293.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D2F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15JH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D2F C13 C1 C 0 1 Y N N N N N -46.693 -29.004 6.138 4.724 -0.900 0.033 C13 A1D2F 1 A1D2F C16 C2 C 0 1 Y N N N N N -46.973 -29.080 4.751 3.767 0.134 -0.105 C16 A1D2F 2 A1D2F C15 C3 C 0 1 Y N N N N N -48.376 -28.800 4.590 4.520 1.343 -0.416 C15 A1D2F 3 A1D2F C11 C4 C 0 1 Y N N N N N -45.857 -29.388 3.926 2.411 -0.180 0.069 C11 A1D2F 4 A1D2F C12 C5 C 0 1 Y N N N N N -44.533 -29.467 5.841 3.013 -2.369 0.475 C12 A1D2F 5 A1D2F C1 C6 C 0 1 N N N N N N -45.982 -29.549 2.438 1.366 0.862 -0.064 C1 A1D2F 6 A1D2F C10 C7 C 0 1 N N N N N N -46.531 -36.079 -1.000 -6.108 -0.856 0.509 C10 A1D2F 7 A1D2F C14 C8 C 0 1 Y N N N N N -48.891 -28.589 5.840 5.819 0.997 -0.449 C14 A1D2F 8 A1D2F C2 C9 C 0 1 N N N N N N -44.998 -30.743 0.471 -0.965 1.571 -0.025 C2 A1D2F 9 A1D2F C3 C10 C 0 1 Y N N N N N -45.488 -32.154 0.177 -2.320 0.957 0.210 C3 A1D2F 10 A1D2F C4 C11 C 0 1 Y N N N N N -46.555 -32.728 0.910 -2.886 1.014 1.470 C4 A1D2F 11 A1D2F C5 C12 C 0 1 Y N N N N N -46.984 -34.038 0.595 -4.133 0.445 1.673 C5 A1D2F 12 A1D2F C6 C13 C 0 1 Y N N N N N -46.309 -34.697 -0.448 -4.768 -0.162 0.599 C6 A1D2F 13 A1D2F C7 C14 C 0 1 Y N N N N N -45.274 -34.043 -1.100 -4.142 -0.183 -0.634 C7 A1D2F 14 A1D2F C8 C15 C 0 1 N N N N N N -44.660 -34.893 -2.174 -5.024 -0.897 -1.638 C8 A1D2F 15 A1D2F C9 C16 C 0 1 N N N N N N -45.435 -36.229 -2.088 -6.428 -0.920 -0.999 C9 A1D2F 16 A1D2F N1 N1 N 0 1 N N N N N N -45.088 -30.396 1.885 0.068 0.541 0.106 N1 A1D2F 17 A1D2F N2 N2 N 0 1 Y N N N N N -44.845 -32.799 -0.822 -2.951 0.372 -0.787 N2 A1D2F 18 A1D2F N3 N3 N 0 1 Y N N N N N -44.651 -29.579 4.517 2.087 -1.439 0.356 N3 A1D2F 19 A1D2F N4 N4 N 0 1 Y N N N N N -45.491 -29.198 6.730 4.298 -2.122 0.321 N4 A1D2F 20 A1D2F N5 N5 N 0 1 Y N N N N N -47.875 -28.702 6.771 5.955 -0.338 -0.177 N5 A1D2F 21 A1D2F O1 O1 O 0 1 N N N N N N -46.891 -29.022 1.807 1.680 2.007 -0.327 O1 A1D2F 22 A1D2F H15 H1 H 0 1 N N N N N N -48.920 -28.763 3.658 4.112 2.328 -0.588 H15 A1D2F 23 A1D2F H12 H2 H 0 1 N N N N N N -43.541 -29.612 6.242 2.705 -3.378 0.709 H12 A1D2F 24 A1D2F H10 H3 H 0 1 N N N N N N -47.535 -36.167 -1.441 -6.042 -1.862 0.925 H10 A1D2F 25 A1D2F H11 H4 H 0 1 N N N N N N -46.408 -36.838 -0.214 -6.869 -0.279 1.035 H11 A1D2F 26 A1D2F H14 H5 H 0 1 N N N N N N -49.925 -28.370 6.063 6.636 1.673 -0.654 H14 A1D2F 27 A1D2F H3 H6 H 0 1 N N N N N N -43.947 -30.663 0.156 -0.928 1.997 -1.028 H3 A1D2F 28 A1D2F H2 H7 H 0 1 N N N N N N -45.609 -30.032 -0.105 -0.789 2.357 0.709 H2 A1D2F 29 A1D2F H4 H8 H 0 1 N N N N N N -47.036 -32.171 1.701 -2.364 1.495 2.284 H4 A1D2F 30 A1D2F H5 H9 H 0 1 N N N N N N -47.793 -34.511 1.131 -4.601 0.474 2.645 H5 A1D2F 31 A1D2F H6 H10 H 0 1 N N N N N N -43.588 -35.050 -1.982 -5.046 -0.348 -2.580 H6 A1D2F 32 A1D2F H7 H11 H 0 1 N N N N N N -44.791 -34.428 -3.162 -4.665 -1.913 -1.800 H7 A1D2F 33 A1D2F H8 H12 H 0 1 N N N N N N -45.901 -36.453 -3.059 -6.951 -1.845 -1.246 H8 A1D2F 34 A1D2F H9 H13 H 0 1 N N N N N N -44.747 -37.043 -1.815 -7.009 -0.051 -1.309 H9 A1D2F 35 A1D2F H1 H14 H 0 1 N N N N N N -44.427 -30.825 2.501 -0.182 -0.373 0.316 H1 A1D2F 36 A1D2F H13 H15 H 0 1 N N N N N N -47.984 -28.582 7.758 6.798 -0.815 -0.141 H13 A1D2F 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D2F C8 C9 SING N N 1 A1D2F C8 C7 SING N N 2 A1D2F C9 C10 SING N N 3 A1D2F C7 N2 DOUB Y N 4 A1D2F C7 C6 SING Y N 5 A1D2F C10 C6 SING N N 6 A1D2F N2 C3 SING Y N 7 A1D2F C6 C5 DOUB Y N 8 A1D2F C3 C2 SING N N 9 A1D2F C3 C4 DOUB Y N 10 A1D2F C2 N1 SING N N 11 A1D2F C5 C4 SING Y N 12 A1D2F O1 C1 DOUB N N 13 A1D2F N1 C1 SING N N 14 A1D2F C1 C11 SING N N 15 A1D2F C11 N3 DOUB Y N 16 A1D2F C11 C16 SING Y N 17 A1D2F N3 C12 SING Y N 18 A1D2F C15 C16 SING Y N 19 A1D2F C15 C14 DOUB Y N 20 A1D2F C16 C13 DOUB Y N 21 A1D2F C14 N5 SING Y N 22 A1D2F C12 N4 DOUB Y N 23 A1D2F C13 N4 SING Y N 24 A1D2F C13 N5 SING Y N 25 A1D2F C15 H15 SING N N 26 A1D2F C12 H12 SING N N 27 A1D2F C10 H10 SING N N 28 A1D2F C10 H11 SING N N 29 A1D2F C14 H14 SING N N 30 A1D2F C2 H3 SING N N 31 A1D2F C2 H2 SING N N 32 A1D2F C4 H4 SING N N 33 A1D2F C5 H5 SING N N 34 A1D2F C8 H6 SING N N 35 A1D2F C8 H7 SING N N 36 A1D2F C9 H8 SING N N 37 A1D2F C9 H9 SING N N 38 A1D2F N1 H1 SING N N 39 A1D2F N5 H13 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D2F SMILES ACDLabs 14.52 "O=C(NCc1ccc2CCCc2n1)c1ncnc2[NH]ccc12" A1D2F InChI InChI 1.06 "InChI=1S/C16H15N5O/c22-16(14-12-6-7-17-15(12)20-9-19-14)18-8-11-5-4-10-2-1-3-13(10)21-11/h4-7,9H,1-3,8H2,(H,18,22)(H,17,19,20)" A1D2F InChIKey InChI 1.06 NVDGDEFSCZXKAT-UHFFFAOYSA-N A1D2F SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1ccc2CCCc2n1)c3ncnc4[nH]ccc34" A1D2F SMILES CACTVS 3.385 "O=C(NCc1ccc2CCCc2n1)c3ncnc4[nH]ccc34" A1D2F SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(nc2c1CCC2)CNC(=O)c3c4cc[nH]c4ncn3" A1D2F SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(nc2c1CCC2)CNC(=O)c3c4cc[nH]c4ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D2F "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(6,7-dihydro-5H-cyclopenta[b]pyridin-2-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1D2F "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(6,7-dihydro-5~{H}-cyclopenta[b]pyridin-2-ylmethyl)-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D2F "Create component" 2026-09-01 RCSB A1D2F "Initial release" 2026-11-04 RCSB #