data_A1D2M # _chem_comp.id A1D2M _chem_comp.name "(1R,2R)-2-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D2M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15KN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D2M C11 C1 C 0 1 Y N N N N N -48.192 -28.751 4.224 2.610 1.861 0.241 C11 A1D2M 1 A1D2M C12 C2 C 0 1 Y N N N N N -46.813 -28.986 4.552 2.296 0.442 0.089 C12 A1D2M 2 A1D2M C1 C3 C 0 1 N N R N N N -43.718 -31.511 2.152 -3.836 -0.485 0.592 C1 A1D2M 3 A1D2M C10 C4 C 0 1 Y N N N N N -48.869 -28.731 5.416 3.943 1.979 0.126 C10 A1D2M 4 A1D2M C2 C5 C 0 1 N N N N N N -42.942 -32.550 1.342 -4.927 0.344 -0.109 C2 A1D2M 5 A1D2M C3 C6 C 0 1 N N N N N N -41.878 -31.728 0.597 -4.259 1.660 -0.559 C3 A1D2M 6 A1D2M C4 C7 C 0 1 N N N N N N -42.377 -30.276 0.563 -2.754 1.307 -0.660 C4 A1D2M 7 A1D2M C5 C8 C 0 1 N N R N N N -43.776 -30.307 1.193 -2.544 0.356 0.545 C5 A1D2M 8 A1D2M C6 C9 C 0 1 N N N N N N -44.205 -28.959 1.803 -1.328 -0.543 0.312 C6 A1D2M 9 A1D2M C7 C10 C 0 1 Y N N N N N -45.587 -29.129 3.857 1.120 -0.323 0.104 C7 A1D2M 10 A1D2M C8 C11 C 0 1 Y N N N N N -44.525 -29.447 5.897 2.395 -2.211 -0.263 C8 A1D2M 11 A1D2M C9 C12 C 0 1 Y N N N N N -46.721 -29.106 5.961 3.525 -0.213 -0.115 C9 A1D2M 12 A1D2M N1 N1 N 0 1 N N N N N N -45.495 -29.041 2.477 -0.112 0.274 0.300 N1 A1D2M 13 A1D2M N2 N2 N 0 1 Y N N N N N -44.457 -29.367 4.570 1.220 -1.637 -0.075 N2 A1D2M 14 A1D2M N3 N3 N 0 1 Y N N N N N -45.595 -29.337 6.681 3.522 -1.534 -0.285 N3 A1D2M 15 A1D2M N4 N4 N 0 1 Y N N N N N -47.989 -28.940 6.461 4.502 0.745 -0.086 N4 A1D2M 16 A1D2M O1 O1 O 0 1 N N N N N N -42.969 -31.214 3.324 -3.642 -1.721 -0.098 O1 A1D2M 17 A1D2M H16 H1 H 0 1 N N N N N N -48.611 -28.617 3.238 1.905 2.662 0.408 H16 A1D2M 18 A1D2M H2 H2 H 0 1 N N N N N N -44.731 -31.872 2.382 -4.121 -0.676 1.627 H2 A1D2M 19 A1D2M H15 H3 H 0 1 N N N N N N -49.932 -28.575 5.523 4.493 2.906 0.192 H15 A1D2M 20 A1D2M H4 H4 H 0 1 N N N N N N -43.605 -33.066 0.632 -5.307 -0.196 -0.976 H4 A1D2M 21 A1D2M H3 H5 H 0 1 N N N N N N -42.470 -33.289 2.006 -5.740 0.556 0.585 H3 A1D2M 22 A1D2M H5 H6 H 0 1 N N N N N N -41.755 -32.109 -0.427 -4.644 1.971 -1.530 H5 A1D2M 23 A1D2M H6 H7 H 0 1 N N N N N N -40.916 -31.785 1.128 -4.420 2.443 0.183 H6 A1D2M 24 A1D2M H7 H8 H 0 1 N N N N N N -41.708 -29.626 1.146 -2.540 0.795 -1.598 H7 A1D2M 25 A1D2M H8 H9 H 0 1 N N N N N N -42.430 -29.912 -0.474 -2.140 2.202 -0.558 H8 A1D2M 26 A1D2M H9 H10 H 0 1 N N N N N N -44.494 -30.553 0.396 -2.424 0.927 1.466 H9 A1D2M 27 A1D2M H11 H11 H 0 1 N N N N N N -43.445 -28.643 2.532 -1.262 -1.280 1.113 H11 A1D2M 28 A1D2M H10 H12 H 0 1 N N N N N N -44.274 -28.213 0.998 -1.432 -1.054 -0.645 H10 A1D2M 29 A1D2M H13 H13 H 0 1 N N N N N N -43.588 -29.625 6.404 2.432 -3.282 -0.404 H13 A1D2M 30 A1D2M H12 H14 H 0 1 N N N N N N -46.004 -28.222 2.212 -0.171 1.233 0.429 H12 A1D2M 31 A1D2M H14 H15 H 0 1 N N N N N N -48.237 -28.966 7.429 5.450 0.576 -0.200 H14 A1D2M 32 A1D2M H1 H16 H 0 1 N N N N N N -42.953 -31.975 3.892 -4.423 -2.290 -0.113 H1 A1D2M 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D2M C4 C3 SING N N 1 A1D2M C4 C5 SING N N 2 A1D2M C3 C2 SING N N 3 A1D2M C5 C6 SING N N 4 A1D2M C5 C1 SING N N 5 A1D2M C2 C1 SING N N 6 A1D2M C6 N1 SING N N 7 A1D2M C1 O1 SING N N 8 A1D2M N1 C7 SING N N 9 A1D2M C7 C12 DOUB Y N 10 A1D2M C7 N2 SING Y N 11 A1D2M C11 C12 SING Y N 12 A1D2M C11 C10 DOUB Y N 13 A1D2M C12 C9 SING Y N 14 A1D2M N2 C8 DOUB Y N 15 A1D2M C10 N4 SING Y N 16 A1D2M C8 N3 SING Y N 17 A1D2M C9 N4 SING Y N 18 A1D2M C9 N3 DOUB Y N 19 A1D2M C11 H16 SING N N 20 A1D2M C1 H2 SING N N 21 A1D2M C10 H15 SING N N 22 A1D2M C2 H4 SING N N 23 A1D2M C2 H3 SING N N 24 A1D2M C3 H5 SING N N 25 A1D2M C3 H6 SING N N 26 A1D2M C4 H7 SING N N 27 A1D2M C4 H8 SING N N 28 A1D2M C5 H9 SING N N 29 A1D2M C6 H11 SING N N 30 A1D2M C6 H10 SING N N 31 A1D2M C8 H13 SING N N 32 A1D2M N1 H12 SING N N 33 A1D2M N4 H14 SING N N 34 A1D2M O1 H1 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D2M SMILES ACDLabs 14.52 "OC1CCCC1CNc1ncnc2[NH]ccc21" A1D2M InChI InChI 1.06 "InChI=1S/C12H16N4O/c17-10-3-1-2-8(10)6-14-12-9-4-5-13-11(9)15-7-16-12/h4-5,7-8,10,17H,1-3,6H2,(H2,13,14,15,16)/t8-,10-/m1/s1" A1D2M InChIKey InChI 1.06 AQRARMMOWHXCJR-PSASIEDQSA-N A1D2M SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CCC[C@@H]1CNc2ncnc3[nH]ccc23" A1D2M SMILES CACTVS 3.385 "O[CH]1CCC[CH]1CNc2ncnc3[nH]ccc23" A1D2M SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC[C@H]3CCC[C@H]3O" A1D2M SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NCC3CCCC3O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D2M "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,2R)-2-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" A1D2M "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},2~{R})-2-[(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)methyl]cyclopentan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D2M "Create component" 2026-09-01 RCSB A1D2M "Initial release" 2026-11-04 RCSB #