data_A1D2O # _chem_comp.id A1D2O _chem_comp.name "{(1R,2R)-2-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclopentyl}methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D2O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15KP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D2O C11 C1 C 0 1 Y N N N N N -47.815 -28.865 4.337 2.404 1.866 -0.343 C11 A1D2O 1 A1D2O C12 C2 C 0 1 Y N N N N N -46.480 -29.129 4.808 2.065 0.477 -0.039 C12 A1D2O 2 A1D2O C1 C3 C 0 1 N N N N N N -43.749 -32.472 1.802 -3.455 0.023 1.476 C1 A1D2O 3 A1D2O C10 C4 C 0 1 Y N N N N N -48.585 -28.604 5.446 3.740 1.969 -0.254 C10 A1D2O 4 A1D2O C2 C5 C 0 1 N N R N N N -43.888 -31.050 1.218 -2.774 0.464 0.179 C2 A1D2O 5 A1D2O C3 C6 C 0 1 N N N N N N -42.791 -30.713 0.197 -3.753 0.325 -1.005 C3 A1D2O 6 A1D2O C4 C7 C 0 1 N N N N N N -42.608 -29.193 0.235 -2.863 -0.150 -2.180 C4 A1D2O 7 A1D2O C5 C8 C 0 1 N N N N N N -43.198 -28.715 1.561 -1.873 -1.120 -1.488 C5 A1D2O 8 A1D2O C6 C9 C 0 1 N N R N N N -43.784 -29.938 2.272 -1.579 -0.454 -0.128 C6 A1D2O 9 A1D2O C7 C10 C 0 1 Y N N N N N -45.223 -29.452 4.242 0.875 -0.262 0.036 C7 A1D2O 10 A1D2O C8 C11 C 0 1 Y N N N N N -44.304 -29.453 6.373 2.118 -2.126 0.589 C8 A1D2O 11 A1D2O C9 C12 C 0 1 Y N N N N N -46.490 -28.995 6.216 3.284 -0.176 0.222 C9 A1D2O 12 A1D2O N1 N1 N 0 1 N N N N N N -45.077 -29.615 2.867 -0.348 0.335 -0.212 N1 A1D2O 13 A1D2O N2 N2 N 0 1 Y N N N N N -44.150 -29.612 5.059 0.952 -1.551 0.352 N2 A1D2O 14 A1D2O N3 N3 N 0 1 Y N N N N N -45.421 -29.149 7.040 3.258 -1.472 0.530 N3 A1D2O 15 A1D2O N4 N4 N 0 1 Y N N N N N -47.782 -28.677 6.571 4.278 0.753 0.084 N4 A1D2O 16 A1D2O O1 O1 O 0 1 N N N N N N -44.603 -32.637 2.917 -4.488 0.951 1.812 O1 A1D2O 17 A1D2O H16 H1 H 0 1 N N N N N N -48.148 -28.871 3.310 1.713 2.657 -0.596 H16 A1D2O 18 A1D2O H3 H2 H 0 1 N N N N N N -44.017 -33.208 1.029 -3.886 -0.969 1.341 H3 A1D2O 19 A1D2O H2 H3 H 0 1 N N N N N N -42.708 -32.633 2.117 -2.719 -0.008 2.280 H2 A1D2O 20 A1D2O H15 H4 H 0 1 N N N N N N -49.641 -28.379 5.440 4.306 2.873 -0.423 H15 A1D2O 21 A1D2O H4 H5 H 0 1 N N N N N N -44.866 -30.971 0.721 -2.438 1.498 0.266 H4 A1D2O 22 A1D2O H5 H6 H 0 1 N N N N N N -43.098 -31.033 -0.810 -4.519 -0.419 -0.782 H5 A1D2O 23 A1D2O H6 H7 H 0 1 N N N N N N -41.851 -31.215 0.470 -4.211 1.286 -1.238 H6 A1D2O 24 A1D2O H8 H8 H 0 1 N N N N N N -41.539 -28.938 0.181 -3.458 -0.674 -2.928 H8 A1D2O 25 A1D2O H7 H9 H 0 1 N N N N N N -43.139 -28.726 -0.607 -2.332 0.690 -2.627 H7 A1D2O 26 A1D2O H10 H10 H 0 1 N N N N N N -42.410 -28.262 2.181 -2.335 -2.097 -1.343 H10 A1D2O 27 A1D2O H9 H11 H 0 1 N N N N N N -43.989 -27.974 1.374 -0.958 -1.213 -2.074 H9 A1D2O 28 A1D2O H11 H12 H 0 1 N N N N N N -43.084 -30.260 3.057 -1.483 -1.215 0.647 H11 A1D2O 29 A1D2O H13 H13 H 0 1 N N N N N N -43.416 -29.586 6.973 2.136 -3.175 0.843 H13 A1D2O 30 A1D2O H12 H14 H 0 1 N N N N N N -45.374 -28.757 2.448 -0.390 1.277 -0.442 H12 A1D2O 31 A1D2O H14 H15 H 0 1 N N N N N N -48.095 -28.521 7.508 5.224 0.579 0.207 H14 A1D2O 32 A1D2O H1 H16 H 0 1 N N N N N N -44.505 -33.516 3.264 -4.964 0.733 2.625 H1 A1D2O 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D2O C3 C4 SING N N 1 A1D2O C3 C2 SING N N 2 A1D2O C4 C5 SING N N 3 A1D2O C2 C1 SING N N 4 A1D2O C2 C6 SING N N 5 A1D2O C5 C6 SING N N 6 A1D2O C1 O1 SING N N 7 A1D2O C6 N1 SING N N 8 A1D2O N1 C7 SING N N 9 A1D2O C7 C12 DOUB Y N 10 A1D2O C7 N2 SING Y N 11 A1D2O C11 C12 SING Y N 12 A1D2O C11 C10 DOUB Y N 13 A1D2O C12 C9 SING Y N 14 A1D2O N2 C8 DOUB Y N 15 A1D2O C10 N4 SING Y N 16 A1D2O C9 N4 SING Y N 17 A1D2O C9 N3 DOUB Y N 18 A1D2O C8 N3 SING Y N 19 A1D2O C11 H16 SING N N 20 A1D2O C1 H3 SING N N 21 A1D2O C1 H2 SING N N 22 A1D2O C10 H15 SING N N 23 A1D2O C2 H4 SING N N 24 A1D2O C3 H5 SING N N 25 A1D2O C3 H6 SING N N 26 A1D2O C4 H8 SING N N 27 A1D2O C4 H7 SING N N 28 A1D2O C5 H10 SING N N 29 A1D2O C5 H9 SING N N 30 A1D2O C6 H11 SING N N 31 A1D2O C8 H13 SING N N 32 A1D2O N1 H12 SING N N 33 A1D2O N4 H14 SING N N 34 A1D2O O1 H1 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D2O SMILES ACDLabs 14.52 "OCC1CCCC1Nc1ncnc2[NH]ccc21" A1D2O InChI InChI 1.06 "InChI=1S/C12H16N4O/c17-6-8-2-1-3-10(8)16-12-9-4-5-13-11(9)14-7-15-12/h4-5,7-8,10,17H,1-3,6H2,(H2,13,14,15,16)/t8-,10+/m0/s1" A1D2O InChIKey InChI 1.06 QHZJAVJCKBWBGE-WCBMZHEXSA-N A1D2O SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1CCC[C@H]1Nc2ncnc3[nH]ccc23" A1D2O SMILES CACTVS 3.385 "OC[CH]1CCC[CH]1Nc2ncnc3[nH]ccc23" A1D2O SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N[C@@H]3CCC[C@H]3CO" A1D2O SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC3CCCC3CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D2O "SYSTEMATIC NAME" ACDLabs 14.52 "{(1R,2R)-2-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclopentyl}methanol" A1D2O "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(1~{R},2~{R})-2-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)cyclopentyl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D2O "Create component" 2026-09-01 RCSB A1D2O "Initial release" 2026-11-04 RCSB #