data_A1D2Q # _chem_comp.id A1D2Q _chem_comp.name "(2R)-2-{[6-(benzylamino)pyrimidin-4-yl]amino}-3-methylbutan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H22 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 286.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D2Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D2Q C13 C1 C 0 1 Y N N N N N -50.355 -33.125 5.529 6.158 1.139 0.076 C13 A1D2Q 1 A1D2Q C16 C2 C 0 1 Y N N N N N -44.140 -30.093 6.629 -0.937 -3.500 0.016 C16 A1D2Q 2 A1D2Q C15 C3 C 0 1 Y N N N N N -49.557 -31.009 4.606 4.141 0.710 -1.142 C15 A1D2Q 3 A1D2Q C11 C4 C 0 1 Y N N N N N -49.651 -31.323 7.018 4.114 0.727 1.252 C11 A1D2Q 4 A1D2Q C12 C5 C 0 1 Y N N N N N -50.152 -32.627 6.830 5.466 1.011 1.266 C12 A1D2Q 5 A1D2Q C1 C6 C 0 1 N N N N N N -41.840 -31.184 0.786 -4.486 0.863 1.978 C1 A1D2Q 6 A1D2Q C10 C7 C 0 1 Y N N N N N -49.350 -30.503 5.909 3.450 0.582 0.049 C10 A1D2Q 7 A1D2Q C14 C8 C 0 1 Y N N N N N -50.057 -32.314 4.417 5.495 0.988 -1.128 C14 A1D2Q 8 A1D2Q C2 C9 C 0 1 N N N N N N -43.134 -30.531 1.307 -4.183 1.462 0.603 C2 A1D2Q 9 A1D2Q C3 C10 C 0 1 N N N N N N -42.900 -29.016 1.473 -4.024 2.978 0.730 C3 A1D2Q 10 A1D2Q C4 C11 C 0 1 N N R N N N -43.660 -31.216 2.601 -2.887 0.857 0.058 C4 A1D2Q 11 A1D2Q C5 C12 C 0 1 N N N N N N -43.993 -32.714 2.438 -2.611 1.418 -1.339 C5 A1D2Q 12 A1D2Q C6 C13 C 0 1 Y N N N N N -44.982 -30.253 4.509 -1.892 -1.402 0.001 C6 A1D2Q 13 A1D2Q C7 C14 C 0 1 Y N N N N N -46.240 -29.811 4.976 -0.622 -0.834 0.011 C7 A1D2Q 14 A1D2Q C8 C15 C 0 1 Y N N N N N -46.342 -29.526 6.353 0.480 -1.683 0.030 C8 A1D2Q 15 A1D2Q C9 C16 C 0 1 N N N N N N -48.809 -29.097 6.143 1.973 0.285 0.034 C9 A1D2Q 16 A1D2Q N1 N1 N 0 1 N N N N N N -44.840 -30.553 3.147 -3.022 -0.600 -0.018 N1 A1D2Q 17 A1D2Q N2 N2 N 0 1 N N N N N N -47.555 -29.075 6.891 1.766 -1.166 0.041 N2 A1D2Q 18 A1D2Q N3 N3 N 0 1 Y N N N N N -45.281 -29.679 7.171 0.282 -3.000 0.026 N3 A1D2Q 19 A1D2Q N4 N4 N 0 1 Y N N N N N -43.926 -30.393 5.348 -2.006 -2.730 0.003 N4 A1D2Q 20 A1D2Q O1 O1 O 0 1 N N N N N N -44.461 -33.303 3.634 -3.744 1.186 -2.178 O1 A1D2Q 21 A1D2Q H19 H1 H 0 1 N N N N N N -50.738 -34.125 5.384 7.215 1.360 0.086 H19 A1D2Q 22 A1D2Q H22 H2 H 0 1 N N N N N N -43.298 -30.197 7.297 -1.064 -4.572 0.013 H22 A1D2Q 23 A1D2Q H21 H3 H 0 1 N N N N N N -49.331 -30.392 3.749 3.623 0.597 -2.082 H21 A1D2Q 24 A1D2Q H17 H4 H 0 1 N N N N N N -49.496 -30.948 8.019 3.573 0.627 2.182 H17 A1D2Q 25 A1D2Q H18 H5 H 0 1 N N N N N N -50.381 -33.245 7.686 5.983 1.133 2.206 H18 A1D2Q 26 A1D2Q H2 H6 H 0 1 N N N N N N -41.998 -32.266 0.664 -5.359 1.357 2.405 H2 A1D2Q 27 A1D2Q H1 H7 H 0 1 N N N N N N -41.571 -30.741 -0.185 -4.686 -0.203 1.874 H1 A1D2Q 28 A1D2Q H3 H8 H 0 1 N N N N N N -41.026 -31.011 1.506 -3.628 1.009 2.635 H3 A1D2Q 29 A1D2Q H20 H9 H 0 1 N N N N N N -50.212 -32.692 3.417 6.035 1.089 -2.058 H20 A1D2Q 30 A1D2Q H4 H10 H 0 1 N N N N N N -43.904 -30.662 0.533 -5.003 1.238 -0.079 H4 A1D2Q 31 A1D2Q H5 H11 H 0 1 N N N N N N -43.820 -28.541 1.845 -3.204 3.201 1.413 H5 A1D2Q 32 A1D2Q H6 H12 H 0 1 N N N N N N -42.084 -28.848 2.191 -3.808 3.404 -0.249 H6 A1D2Q 33 A1D2Q H7 H13 H 0 1 N N N N N N -42.629 -28.578 0.501 -4.947 3.408 1.118 H7 A1D2Q 34 A1D2Q H8 H14 H 0 1 N N N N N N -42.855 -31.146 3.348 -2.060 1.111 0.722 H8 A1D2Q 35 A1D2Q H9 H15 H 0 1 N N N N N N -44.770 -32.820 1.666 -2.422 2.489 -1.269 H9 A1D2Q 36 A1D2Q H10 H16 H 0 1 N N N N N N -43.084 -33.244 2.118 -1.737 0.922 -1.763 H10 A1D2Q 37 A1D2Q H13 H17 H 0 1 N N N N N N -47.083 -29.697 4.310 -0.495 0.239 0.009 H13 A1D2Q 38 A1D2Q H16 H18 H 0 1 N N N N N N -48.640 -28.621 5.166 1.505 0.723 0.915 H16 A1D2Q 39 A1D2Q H15 H19 H 0 1 N N N N N N -49.560 -28.523 6.705 1.525 0.711 -0.865 H15 A1D2Q 40 A1D2Q H12 H20 H 0 1 N N N N N N -44.916 -29.681 2.663 -3.902 -1.003 -0.082 H12 A1D2Q 41 A1D2Q H14 H21 H 0 1 N N N N N N -47.405 -28.121 7.150 2.530 -1.764 0.054 H14 A1D2Q 42 A1D2Q H11 H22 H 0 1 N N N N N N -44.651 -34.221 3.482 -3.639 1.516 -3.080 H11 A1D2Q 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D2Q C1 C2 SING N N 1 A1D2Q C2 C3 SING N N 2 A1D2Q C2 C4 SING N N 3 A1D2Q C5 C4 SING N N 4 A1D2Q C5 O1 SING N N 5 A1D2Q C4 N1 SING N N 6 A1D2Q N1 C6 SING N N 7 A1D2Q C14 C15 DOUB Y N 8 A1D2Q C14 C13 SING Y N 9 A1D2Q C6 C7 DOUB Y N 10 A1D2Q C6 N4 SING Y N 11 A1D2Q C15 C10 SING Y N 12 A1D2Q C7 C8 SING Y N 13 A1D2Q N4 C16 DOUB Y N 14 A1D2Q C13 C12 DOUB Y N 15 A1D2Q C10 C9 SING N N 16 A1D2Q C10 C11 DOUB Y N 17 A1D2Q C9 N2 SING N N 18 A1D2Q C8 N2 SING N N 19 A1D2Q C8 N3 DOUB Y N 20 A1D2Q C16 N3 SING Y N 21 A1D2Q C12 C11 SING Y N 22 A1D2Q C13 H19 SING N N 23 A1D2Q C16 H22 SING N N 24 A1D2Q C15 H21 SING N N 25 A1D2Q C11 H17 SING N N 26 A1D2Q C12 H18 SING N N 27 A1D2Q C1 H2 SING N N 28 A1D2Q C1 H1 SING N N 29 A1D2Q C1 H3 SING N N 30 A1D2Q C14 H20 SING N N 31 A1D2Q C2 H4 SING N N 32 A1D2Q C3 H5 SING N N 33 A1D2Q C3 H6 SING N N 34 A1D2Q C3 H7 SING N N 35 A1D2Q C4 H8 SING N N 36 A1D2Q C5 H9 SING N N 37 A1D2Q C5 H10 SING N N 38 A1D2Q C7 H13 SING N N 39 A1D2Q C9 H16 SING N N 40 A1D2Q C9 H15 SING N N 41 A1D2Q N1 H12 SING N N 42 A1D2Q N2 H14 SING N N 43 A1D2Q O1 H11 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D2Q SMILES ACDLabs 14.52 "CC(C)C(CO)Nc1cc(NCc2ccccc2)ncn1" A1D2Q InChI InChI 1.06 "InChI=1S/C16H22N4O/c1-12(2)14(10-21)20-16-8-15(18-11-19-16)17-9-13-6-4-3-5-7-13/h3-8,11-12,14,21H,9-10H2,1-2H3,(H2,17,18,19,20)/t14-/m0/s1" A1D2Q InChIKey InChI 1.06 IHTVQRXTGRAITN-AWEZNQCLSA-N A1D2Q SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](CO)Nc1cc(NCc2ccccc2)ncn1" A1D2Q SMILES CACTVS 3.385 "CC(C)[CH](CO)Nc1cc(NCc2ccccc2)ncn1" A1D2Q SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@H](CO)Nc1cc(ncn1)NCc2ccccc2" A1D2Q SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(CO)Nc1cc(ncn1)NCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D2Q "SYSTEMATIC NAME" ACDLabs 14.52 "(2R)-2-{[6-(benzylamino)pyrimidin-4-yl]amino}-3-methylbutan-1-ol" A1D2Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-3-methyl-2-[[6-[(phenylmethyl)amino]pyrimidin-4-yl]amino]butan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D2Q "Create component" 2026-09-01 RCSB A1D2Q "Initial release" 2026-11-04 RCSB #