data_A1D2S # _chem_comp.id A1D2S _chem_comp.name "[(3R)-3-hydroxypiperidin-1-yl](7H-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D2S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15HW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D2S C11 C1 C 0 1 Y N N N N N -47.854 -28.946 4.632 2.342 1.846 -0.403 C11 A1D2S 1 A1D2S C12 C2 C 0 1 Y N N N N N -48.601 -28.543 5.711 3.609 1.871 -0.855 C12 A1D2S 2 A1D2S C1 C3 C 0 1 N N N N N N -45.217 -30.251 3.171 -0.309 0.508 0.813 C1 A1D2S 3 A1D2S C10 C4 C 0 1 Y N N N N N -46.622 -29.475 5.152 2.059 0.470 -0.012 C10 A1D2S 4 A1D2S C2 C5 C 0 1 N N N N N N -43.693 -30.017 1.191 -1.550 -1.472 0.084 C2 A1D2S 5 A1D2S C3 C6 C 0 1 N N N N N N -42.469 -30.937 1.017 -2.390 -1.515 -1.197 C3 A1D2S 6 A1D2S C4 C7 C 0 1 N N N N N N -41.286 -30.433 1.857 -3.759 -0.887 -0.926 C4 A1D2S 7 A1D2S C5 C8 C 0 1 N N R N N N -41.704 -30.208 3.321 -3.579 0.576 -0.515 C5 A1D2S 8 A1D2S C6 C9 C 0 1 N N N N N N -42.925 -29.276 3.385 -2.753 0.642 0.774 C6 A1D2S 9 A1D2S C7 C10 C 0 1 Y N N N N N -45.430 -30.055 4.640 0.953 -0.209 0.521 C7 A1D2S 10 A1D2S C8 C11 C 0 1 Y N N N N N -44.642 -30.275 6.806 2.190 -2.156 0.498 C8 A1D2S 11 A1D2S C9 C12 C 0 1 Y N N N N N -46.671 -29.362 6.566 3.242 -0.264 -0.273 C9 A1D2S 12 A1D2S N1 N1 N 0 1 N N N N N N -44.032 -29.878 2.622 -1.494 -0.085 0.567 N1 A1D2S 13 A1D2S N2 N2 N 0 1 Y N N N N N -44.454 -30.450 5.495 1.069 -1.515 0.757 N2 A1D2S 14 A1D2S N3 N3 N 0 1 Y N N N N N -45.698 -29.752 7.433 3.255 -1.561 -0.002 N3 A1D2S 15 A1D2S N4 N4 N 0 1 Y N N N N N -47.886 -28.785 6.870 4.157 0.619 -0.782 N4 A1D2S 16 A1D2S O1 O1 O 0 1 N N N N N N -46.128 -30.749 2.510 -0.277 1.631 1.276 O1 A1D2S 17 A1D2S O2 O2 O 0 1 N N N N N N -40.627 -29.630 4.028 -4.860 1.170 -0.292 O2 A1D2S 18 A1D2S H12 H1 H 0 1 N N N N N N -48.137 -28.879 3.592 1.665 2.685 -0.339 H12 A1D2S 19 A1D2S H13 H2 H 0 1 N N N N N N -49.588 -28.107 5.663 4.119 2.750 -1.221 H13 A1D2S 20 A1D2S H2 H3 H 0 1 N N N N N N -43.463 -29.025 0.775 -2.010 -2.105 0.844 H2 A1D2S 21 A1D2S H1 H4 H 0 1 N N N N N N -44.551 -30.450 0.655 -0.541 -1.827 -0.125 H1 A1D2S 22 A1D2S H3 H5 H 0 1 N N N N N N -42.734 -31.955 1.340 -1.883 -0.956 -1.983 H3 A1D2S 23 A1D2S H4 H6 H 0 1 N N N N N N -42.178 -30.953 -0.044 -2.520 -2.550 -1.512 H4 A1D2S 24 A1D2S H6 H7 H 0 1 N N N N N N -40.478 -31.179 1.824 -4.367 -0.939 -1.829 H6 A1D2S 25 A1D2S H5 H8 H 0 1 N N N N N N -40.925 -29.483 1.436 -4.255 -1.432 -0.122 H5 A1D2S 26 A1D2S H7 H9 H 0 1 N N N N N N -41.977 -31.178 3.763 -3.061 1.115 -1.307 H7 A1D2S 27 A1D2S H9 H10 H 0 1 N N N N N N -42.666 -28.299 2.950 -2.538 1.683 1.017 H9 A1D2S 28 A1D2S H8 H11 H 0 1 N N N N N N -43.231 -29.141 4.433 -3.312 0.185 1.590 H8 A1D2S 29 A1D2S H11 H12 H 0 1 N N N N N N -43.832 -30.600 7.443 2.240 -3.214 0.705 H11 A1D2S 30 A1D2S H14 H13 H 0 1 N N N N N N -48.204 -28.572 7.794 5.060 0.391 -1.052 H14 A1D2S 31 A1D2S H10 H14 H 0 1 N N N N N N -40.881 -29.489 4.933 -4.822 2.099 -0.027 H10 A1D2S 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D2S C3 C2 SING N N 1 A1D2S C3 C4 SING N N 2 A1D2S C2 N1 SING N N 3 A1D2S C4 C5 SING N N 4 A1D2S O1 C1 DOUB N N 5 A1D2S N1 C1 SING N N 6 A1D2S N1 C6 SING N N 7 A1D2S C1 C7 SING N N 8 A1D2S C5 C6 SING N N 9 A1D2S C5 O2 SING N N 10 A1D2S C11 C10 SING Y N 11 A1D2S C11 C12 DOUB Y N 12 A1D2S C7 C10 DOUB Y N 13 A1D2S C7 N2 SING Y N 14 A1D2S C10 C9 SING Y N 15 A1D2S N2 C8 DOUB Y N 16 A1D2S C12 N4 SING Y N 17 A1D2S C9 N4 SING Y N 18 A1D2S C9 N3 DOUB Y N 19 A1D2S C8 N3 SING Y N 20 A1D2S C11 H12 SING N N 21 A1D2S C12 H13 SING N N 22 A1D2S C2 H2 SING N N 23 A1D2S C2 H1 SING N N 24 A1D2S C3 H3 SING N N 25 A1D2S C3 H4 SING N N 26 A1D2S C4 H6 SING N N 27 A1D2S C4 H5 SING N N 28 A1D2S C5 H7 SING N N 29 A1D2S C6 H9 SING N N 30 A1D2S C6 H8 SING N N 31 A1D2S C8 H11 SING N N 32 A1D2S N4 H14 SING N N 33 A1D2S O2 H10 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D2S SMILES ACDLabs 14.52 "OC1CCCN(C1)C(=O)c1ncnc2[NH]ccc21" A1D2S InChI InChI 1.06 "InChI=1S/C12H14N4O2/c17-8-2-1-5-16(6-8)12(18)10-9-3-4-13-11(9)15-7-14-10/h3-4,7-8,17H,1-2,5-6H2,(H,13,14,15)/t8-/m1/s1" A1D2S InChIKey InChI 1.06 NBHDXKNRDBUECP-MRVPVSSYSA-N A1D2S SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CCCN(C1)C(=O)c2ncnc3[nH]ccc23" A1D2S SMILES CACTVS 3.385 "O[CH]1CCCN(C1)C(=O)c2ncnc3[nH]ccc23" A1D2S SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N3CCC[C@H](C3)O" A1D2S SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N3CCCC(C3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D2S "SYSTEMATIC NAME" ACDLabs 14.52 "[(3R)-3-hydroxypiperidin-1-yl](7H-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" A1D2S "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(3~{R})-3-oxidanylpiperidin-1-yl]-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D2S "Create component" 2026-09-01 RCSB A1D2S "Initial release" 2026-11-04 RCSB #