data_A1D30 # _chem_comp.id A1D30 _chem_comp.name "(2R)-2-[(6-{[(2R)-2-hydroxypropyl]amino}pyrimidin-4-yl)amino]-3-methylbutan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 254.329 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D30 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15MI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D30 C11 C1 C 0 1 N N N N N N -50.245 -30.724 6.938 -4.059 2.683 0.735 C11 A1D30 1 A1D30 C12 C2 C 0 1 Y N N N N N -44.507 -29.753 6.309 -0.199 -3.397 -0.215 C12 A1D30 2 A1D30 C1 C3 C 0 1 N N N N N N -41.991 -30.859 0.597 1.473 0.997 -1.960 C1 A1D30 3 A1D30 C10 C4 C 0 1 N N R N N N -50.074 -29.972 5.611 -4.042 1.169 0.515 C10 A1D30 4 A1D30 C2 C5 C 0 1 N N N N N N -43.332 -30.252 1.047 2.545 1.383 -0.938 C2 A1D30 5 A1D30 C3 C6 C 0 1 N N N N N N -43.158 -28.732 1.233 2.482 2.890 -0.678 C3 A1D30 6 A1D30 C4 C7 C 0 1 N N R N N N -43.875 -30.939 2.330 2.298 0.629 0.370 C4 A1D30 7 A1D30 C5 C8 C 0 1 N N N N N N -44.083 -32.462 2.179 3.436 0.922 1.350 C5 A1D30 8 A1D30 C6 C9 C 0 1 Y N N N N N -45.318 -30.011 4.179 1.019 -1.457 0.031 C6 A1D30 9 A1D30 C7 C10 C 0 1 Y N N N N N -46.607 -29.624 4.621 -0.166 -0.739 0.160 C7 A1D30 10 A1D30 C8 C11 C 0 1 Y N N N N N -46.737 -29.310 5.989 -1.369 -1.434 0.083 C8 A1D30 11 A1D30 C9 C12 C 0 1 N N N N N N -49.157 -28.736 5.723 -2.594 0.684 0.415 C9 A1D30 12 A1D30 N1 N1 N 0 1 N N N N N N -45.118 -30.343 2.830 2.244 -0.810 0.101 N1 A1D30 13 A1D30 N2 N2 N 0 1 N N N N N N -47.965 -28.919 6.532 -2.577 -0.765 0.205 N2 A1D30 14 A1D30 N3 N3 N 0 1 Y N N N N N -45.684 -29.388 6.824 -1.343 -2.753 -0.098 N3 A1D30 15 A1D30 N4 N4 N 0 1 Y N N N N N -44.267 -30.075 5.040 0.960 -2.774 -0.153 N4 A1D30 16 A1D30 O1 O1 O 0 1 N N N N N N -44.742 -33.041 3.290 4.687 0.608 0.735 O1 A1D30 17 A1D30 O2 O2 O 0 1 N N N N N N -51.359 -29.547 5.198 -4.733 0.855 -0.696 O2 A1D30 18 A1D30 H19 H1 H 0 1 N N N N N N -49.263 -31.071 7.292 -5.090 3.028 0.806 H19 A1D30 19 A1D30 H20 H2 H 0 1 N N N N N N -50.688 -30.050 7.687 -3.531 2.921 1.659 H20 A1D30 20 A1D30 H18 H3 H 0 1 N N N N N N -50.907 -31.589 6.786 -3.567 3.177 -0.102 H18 A1D30 21 A1D30 H22 H4 H 0 1 N N N N N N -43.668 -29.791 6.988 -0.212 -4.467 -0.361 H22 A1D30 22 A1D30 H2 H5 H 0 1 N N N N N N -42.106 -31.945 0.462 0.485 1.172 -1.533 H2 A1D30 23 A1D30 H1 H6 H 0 1 N N N N N N -41.683 -30.402 -0.355 1.593 1.602 -2.858 H1 A1D30 24 A1D30 H3 H7 H 0 1 N N N N N N -41.225 -30.664 1.362 1.577 -0.058 -2.215 H3 A1D30 25 A1D30 H17 H8 H 0 1 N N N N N N -49.643 -30.661 4.869 -4.533 0.674 1.353 H17 A1D30 26 A1D30 H4 H9 H 0 1 N N N N N N -44.065 -30.414 0.243 3.529 1.123 -1.328 H4 A1D30 27 A1D30 H7 H10 H 0 1 N N N N N N -44.112 -28.290 1.555 1.544 3.133 -0.178 H7 A1D30 28 A1D30 H5 H11 H 0 1 N N N N N N -42.390 -28.542 1.997 3.318 3.184 -0.044 H5 A1D30 29 A1D30 H6 H12 H 0 1 N N N N N N -42.847 -28.279 0.280 2.538 3.425 -1.626 H6 A1D30 30 A1D30 H8 H13 H 0 1 N N N N N N -43.107 -30.802 3.106 1.352 0.953 0.804 H8 A1D30 31 A1D30 H9 H14 H 0 1 N N N N N N -44.686 -32.646 1.278 3.419 1.977 1.621 H9 A1D30 32 A1D30 H10 H15 H 0 1 N N N N N N -43.099 -32.941 2.066 3.309 0.315 2.246 H10 A1D30 33 A1D30 H13 H16 H 0 1 N N N N N N -47.447 -29.572 3.944 -0.153 0.330 0.311 H13 A1D30 34 A1D30 H15 H17 H 0 1 N N N N N N -48.839 -28.456 4.708 -2.102 1.179 -0.422 H15 A1D30 35 A1D30 H16 H18 H 0 1 N N N N N N -49.744 -27.916 6.163 -2.066 0.923 1.339 H16 A1D30 36 A1D30 H12 H19 H 0 1 N N N N N N -45.243 -29.494 2.316 3.064 -1.311 -0.029 H12 A1D30 37 A1D30 H14 H20 H 0 1 N N N N N N -47.801 -28.043 6.986 -3.411 -1.257 0.150 H14 A1D30 38 A1D30 H11 H21 H 0 1 N N N N N N -44.844 -33.975 3.147 5.455 0.769 1.300 H11 A1D30 39 A1D30 H21 H22 H 0 1 N N N N N N -51.934 -30.300 5.125 -5.659 1.134 -0.703 H21 A1D30 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D30 C1 C2 SING N N 1 A1D30 C2 C3 SING N N 2 A1D30 C2 C4 SING N N 3 A1D30 C5 C4 SING N N 4 A1D30 C5 O1 SING N N 5 A1D30 C4 N1 SING N N 6 A1D30 N1 C6 SING N N 7 A1D30 C6 C7 DOUB Y N 8 A1D30 C6 N4 SING Y N 9 A1D30 C7 C8 SING Y N 10 A1D30 N4 C12 DOUB Y N 11 A1D30 O2 C10 SING N N 12 A1D30 C10 C9 SING N N 13 A1D30 C10 C11 SING N N 14 A1D30 C9 N2 SING N N 15 A1D30 C8 N2 SING N N 16 A1D30 C8 N3 DOUB Y N 17 A1D30 C12 N3 SING Y N 18 A1D30 C11 H19 SING N N 19 A1D30 C11 H20 SING N N 20 A1D30 C11 H18 SING N N 21 A1D30 C12 H22 SING N N 22 A1D30 C1 H2 SING N N 23 A1D30 C1 H1 SING N N 24 A1D30 C1 H3 SING N N 25 A1D30 C10 H17 SING N N 26 A1D30 C2 H4 SING N N 27 A1D30 C3 H7 SING N N 28 A1D30 C3 H5 SING N N 29 A1D30 C3 H6 SING N N 30 A1D30 C4 H8 SING N N 31 A1D30 C5 H9 SING N N 32 A1D30 C5 H10 SING N N 33 A1D30 C7 H13 SING N N 34 A1D30 C9 H15 SING N N 35 A1D30 C9 H16 SING N N 36 A1D30 N1 H12 SING N N 37 A1D30 N2 H14 SING N N 38 A1D30 O1 H11 SING N N 39 A1D30 O2 H21 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D30 SMILES ACDLabs 14.52 "CC(C)C(CO)Nc1cc(NCC(C)O)ncn1" A1D30 InChI InChI 1.06 "InChI=1S/C12H22N4O2/c1-8(2)10(6-17)16-12-4-11(14-7-15-12)13-5-9(3)18/h4,7-10,17-18H,5-6H2,1-3H3,(H2,13,14,15,16)/t9-,10+/m1/s1" A1D30 InChIKey InChI 1.06 GMOKKKOPSZWBGC-ZJUUUORDSA-N A1D30 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)CNc1cc(N[C@@H](CO)C(C)C)ncn1" A1D30 SMILES CACTVS 3.385 "C[CH](O)CNc1cc(N[CH](CO)C(C)C)ncn1" A1D30 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](CNc1cc(ncn1)N[C@@H](CO)C(C)C)O" A1D30 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(CO)Nc1cc(ncn1)NCC(C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D30 "SYSTEMATIC NAME" ACDLabs 14.52 "(2R)-2-[(6-{[(2R)-2-hydroxypropyl]amino}pyrimidin-4-yl)amino]-3-methylbutan-1-ol" A1D30 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-3-methyl-2-[[6-[[(2~{R})-2-oxidanylpropyl]amino]pyrimidin-4-yl]amino]butan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D30 "Create component" 2026-09-01 RCSB A1D30 "Initial release" 2026-11-04 RCSB #