data_A1D39 # _chem_comp.id A1D39 _chem_comp.name "(3R,6S)-1-(4-carbamamidobenzoyl)-6-methylpiperidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H19 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 305.329 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D39 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15OQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D39 C13 C1 C 0 1 N N N N N N -51.122 -29.482 6.577 5.053 0.602 0.371 C13 A1D39 1 A1D39 C15 C2 C 0 1 Y N N N N N -46.715 -28.522 4.554 0.972 -0.360 0.695 C15 A1D39 2 A1D39 C11 C3 C 0 1 Y N N N N N -49.438 -29.073 4.198 2.561 -1.225 -1.416 C11 A1D39 3 A1D39 C12 C4 C 0 1 Y N N N N N -48.907 -29.036 5.504 3.033 -0.263 -0.528 C12 A1D39 4 A1D39 C1 C5 C 0 1 N N N N N N -43.259 -27.605 1.038 -3.786 -1.464 1.748 C1 A1D39 5 A1D39 C10 C6 C 0 1 Y N N N N N -48.621 -28.831 3.079 1.306 -1.765 -1.246 C10 A1D39 6 A1D39 C14 C7 C 0 1 Y N N N N N -47.530 -28.767 5.674 2.233 0.166 0.527 C14 A1D39 7 A1D39 C2 C8 C 0 1 N N S N N N -44.398 -28.566 0.651 -3.263 -1.623 0.319 C2 A1D39 8 A1D39 C3 C9 C 0 1 N N N N N N -43.921 -29.805 -0.133 -4.163 -0.847 -0.647 C3 A1D39 9 A1D39 C4 C10 C 0 1 N N N N N N -43.253 -30.841 0.772 -4.058 0.650 -0.345 C4 A1D39 10 A1D39 C5 C11 C 0 1 N N R N N N -44.210 -31.215 1.907 -2.614 1.114 -0.551 C5 A1D39 11 A1D39 C6 C12 C 0 1 N N N N N N -43.529 -32.229 2.830 -2.518 2.594 -0.284 C6 A1D39 12 A1D39 C7 C13 C 0 1 N N N N N N -44.607 -29.962 2.707 -1.696 0.359 0.416 C7 A1D39 13 A1D39 C8 C14 C 0 1 N N N N N N -46.393 -28.279 2.051 -0.853 -1.898 -0.013 C8 A1D39 14 A1D39 C9 C15 C 0 1 Y N N N N N -47.250 -28.566 3.248 0.498 -1.331 -0.191 C9 A1D39 15 A1D39 N1 N1 N 0 1 N N N N N N -45.212 -28.923 1.838 -1.899 -1.084 0.232 N1 A1D39 16 A1D39 N2 N2 N 0 1 N N N N N N -49.794 -29.300 6.584 4.305 0.280 -0.702 N2 A1D39 17 A1D39 N3 N3 N 0 1 N N N N N N -51.583 -29.712 7.811 6.317 1.039 0.205 N3 A1D39 18 A1D39 O1 O1 O 0 1 N N N N N N -43.775 -33.442 2.654 -3.503 3.215 0.038 O1 A1D39 19 A1D39 O2 O2 O 0 1 N N N N N N -46.819 -27.411 1.284 -1.023 -3.100 -0.088 O2 A1D39 20 A1D39 O3 O3 O 0 1 N N N N N N -51.840 -29.448 5.582 4.586 0.503 1.490 O3 A1D39 21 A1D39 O4 O4 O 0 1 N N N N N N -42.770 -31.751 3.698 -1.338 3.222 -0.405 O4 A1D39 22 A1D39 H18 H1 H 0 1 N N N N N N -45.668 -28.298 4.695 0.352 -0.027 1.514 H18 A1D39 23 A1D39 H13 H2 H 0 1 N N N N N N -50.486 -29.290 4.055 3.184 -1.556 -2.233 H13 A1D39 24 A1D39 H2 H3 H 0 1 N N N N N N -43.673 -26.749 1.592 -3.796 -0.407 2.016 H2 A1D39 25 A1D39 H3 H4 H 0 1 N N N N N N -42.532 -28.134 1.671 -4.798 -1.864 1.811 H3 A1D39 26 A1D39 H1 H5 H 0 1 N N N N N N -42.758 -27.245 0.127 -3.137 -2.007 2.435 H1 A1D39 27 A1D39 H12 H6 H 0 1 N N N N N N -49.048 -28.849 2.087 0.942 -2.514 -1.933 H12 A1D39 28 A1D39 H17 H7 H 0 1 N N N N N N -47.103 -28.750 6.666 2.602 0.913 1.214 H17 A1D39 29 A1D39 H4 H8 H 0 1 N N N N N N -45.055 -28.006 -0.030 -3.257 -2.679 0.048 H4 A1D39 30 A1D39 H5 H9 H 0 1 N N N N N N -44.789 -30.270 -0.623 -3.843 -1.034 -1.672 H5 A1D39 31 A1D39 H6 H10 H 0 1 N N N N N N -43.198 -29.484 -0.897 -5.196 -1.171 -0.522 H6 A1D39 32 A1D39 H8 H11 H 0 1 N N N N N N -43.010 -31.739 0.185 -4.716 1.203 -1.015 H8 A1D39 33 A1D39 H7 H12 H 0 1 N N N N N N -42.329 -30.418 1.195 -4.354 0.833 0.688 H7 A1D39 34 A1D39 H9 H13 H 0 1 N N N N N N -45.116 -31.669 1.479 -2.309 0.908 -1.577 H9 A1D39 35 A1D39 H11 H14 H 0 1 N N N N N N -43.709 -29.546 3.187 -0.657 0.613 0.207 H11 A1D39 36 A1D39 H10 H15 H 0 1 N N N N N N -45.336 -30.249 3.480 -1.940 0.636 1.442 H10 A1D39 37 A1D39 H14 H16 H 0 1 N N N N N N -49.362 -29.359 7.484 4.651 0.427 -1.596 H14 A1D39 38 A1D39 H15 H17 H 0 1 N N N N N N -52.560 -29.868 7.959 6.688 1.122 -0.687 H15 A1D39 39 A1D39 H16 H18 H 0 1 N N N N N N -50.951 -29.728 8.586 6.856 1.270 0.978 H16 A1D39 40 A1D39 H19 H19 H 0 1 N N N N N N -42.398 -32.455 4.217 -1.326 4.172 -0.223 H19 A1D39 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D39 C3 C2 SING N N 1 A1D39 C3 C4 SING N N 2 A1D39 C2 C1 SING N N 3 A1D39 C2 N1 SING N N 4 A1D39 C4 C5 SING N N 5 A1D39 O2 C8 DOUB N N 6 A1D39 N1 C8 SING N N 7 A1D39 N1 C7 SING N N 8 A1D39 C5 C7 SING N N 9 A1D39 C5 C6 SING N N 10 A1D39 C8 C9 SING N N 11 A1D39 O1 C6 DOUB N N 12 A1D39 C6 O4 SING N N 13 A1D39 C10 C9 DOUB Y N 14 A1D39 C10 C11 SING Y N 15 A1D39 C9 C15 SING Y N 16 A1D39 C11 C12 DOUB Y N 17 A1D39 C15 C14 DOUB Y N 18 A1D39 C12 C14 SING Y N 19 A1D39 C12 N2 SING N N 20 A1D39 O3 C13 DOUB N N 21 A1D39 C13 N2 SING N N 22 A1D39 C13 N3 SING N N 23 A1D39 C15 H18 SING N N 24 A1D39 C11 H13 SING N N 25 A1D39 C1 H2 SING N N 26 A1D39 C1 H3 SING N N 27 A1D39 C1 H1 SING N N 28 A1D39 C10 H12 SING N N 29 A1D39 C14 H17 SING N N 30 A1D39 C2 H4 SING N N 31 A1D39 C3 H5 SING N N 32 A1D39 C3 H6 SING N N 33 A1D39 C4 H8 SING N N 34 A1D39 C4 H7 SING N N 35 A1D39 C5 H9 SING N N 36 A1D39 C7 H11 SING N N 37 A1D39 C7 H10 SING N N 38 A1D39 N2 H14 SING N N 39 A1D39 N3 H15 SING N N 40 A1D39 N3 H16 SING N N 41 A1D39 O4 H19 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D39 SMILES ACDLabs 14.52 "O=C(c1ccc(NC(N)=O)cc1)N1CC(CCC1C)C(=O)O" A1D39 InChI InChI 1.06 "InChI=1S/C15H19N3O4/c1-9-2-3-11(14(20)21)8-18(9)13(19)10-4-6-12(7-5-10)17-15(16)22/h4-7,9,11H,2-3,8H2,1H3,(H,20,21)(H3,16,17,22)/t9-,11+/m0/s1" A1D39 InChIKey InChI 1.06 FJSJRSDQERZIKR-GXSJLCMTSA-N A1D39 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CC[C@H](CN1C(=O)c2ccc(NC(N)=O)cc2)C(O)=O" A1D39 SMILES CACTVS 3.385 "C[CH]1CC[CH](CN1C(=O)c2ccc(NC(N)=O)cc2)C(O)=O" A1D39 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1CC[C@H](CN1C(=O)c2ccc(cc2)NC(=O)N)C(=O)O" A1D39 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CCC(CN1C(=O)c2ccc(cc2)NC(=O)N)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D39 "SYSTEMATIC NAME" ACDLabs 14.52 "(3R,6S)-1-(4-carbamamidobenzoyl)-6-methylpiperidine-3-carboxylic acid" A1D39 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R},6~{S})-1-[4-(aminocarbonylamino)phenyl]carbonyl-6-methyl-piperidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D39 "Create component" 2026-09-01 RCSB A1D39 "Initial release" 2026-11-04 RCSB #