data_A1D3A # _chem_comp.id A1D3A _chem_comp.name "methyl 1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-D-prolinate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15MV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3A C11 C1 C 0 1 Y N N N N N -48.183 -28.999 4.749 2.480 1.331 1.026 C11 A1D3A 1 A1D3A C12 C2 C 0 1 Y N N N N N -46.762 -29.146 4.975 1.966 0.190 0.270 C12 A1D3A 2 A1D3A C1 C3 C 0 1 N N N N N N -41.524 -31.639 1.135 -4.716 -1.152 1.211 C1 A1D3A 3 A1D3A C10 C4 C 0 1 Y N N N N N -48.785 -28.853 5.979 3.796 1.123 1.195 C10 A1D3A 4 A1D3A C2 C5 C 0 1 N N N N N N -43.436 -30.616 2.121 -2.617 -0.317 0.454 C2 A1D3A 5 A1D3A C3 C6 C 0 1 N N R N N N -44.272 -29.319 2.031 -1.606 -0.002 -0.619 C3 A1D3A 6 A1D3A C4 C7 C 0 1 N N N N N N -44.746 -29.003 0.596 -2.192 1.030 -1.605 C4 A1D3A 7 A1D3A C5 C8 C 0 1 N N N N N N -46.159 -29.580 0.521 -1.618 2.374 -1.085 C5 A1D3A 8 A1D3A C6 C9 C 0 1 N N N N N N -46.693 -29.397 1.943 -0.211 1.947 -0.599 C6 A1D3A 9 A1D3A C7 C10 C 0 1 Y N N N N N -45.568 -29.320 4.206 0.707 -0.193 -0.220 C7 A1D3A 10 A1D3A C8 C11 C 0 1 Y N N N N N -44.354 -29.327 6.202 1.673 -2.101 -1.086 C8 A1D3A 11 A1D3A C9 C12 C 0 1 Y N N N N N -46.565 -29.079 6.384 3.067 -0.654 0.034 C9 A1D3A 12 A1D3A N1 N1 N 0 1 N N N N N N -45.515 -29.418 2.798 -0.405 0.603 -0.015 N1 A1D3A 13 A1D3A N2 N2 N 0 1 Y N N N N N -44.386 -29.396 4.871 0.612 -1.339 -0.887 N2 A1D3A 14 A1D3A N3 N3 N 0 1 Y N N N N N -45.376 -29.168 7.040 2.870 -1.782 -0.646 N3 A1D3A 15 A1D3A N4 N4 N 0 1 Y N N N N N -47.807 -28.912 6.955 4.159 -0.061 0.607 N4 A1D3A 16 A1D3A O1 O1 O 0 1 N N N N N N -42.405 -30.542 1.262 -3.792 -0.877 0.126 O1 A1D3A 17 A1D3A O2 O2 O 0 1 N N N N N N -43.664 -31.578 2.866 -2.369 -0.065 1.610 O2 A1D3A 18 A1D3A H14 H1 H 0 1 N N N N N N -48.681 -29.003 3.791 1.912 2.180 1.376 H14 A1D3A 19 A1D3A H1 H2 H 0 1 N N N N N N -40.747 -31.402 0.393 -4.252 -1.839 1.919 H1 A1D3A 20 A1D3A H3 H3 H 0 1 N N N N N N -41.052 -31.844 2.107 -4.967 -0.221 1.720 H3 A1D3A 21 A1D3A H2 H4 H 0 1 N N N N N N -42.087 -32.525 0.806 -5.624 -1.603 0.809 H2 A1D3A 22 A1D3A H13 H5 H 0 1 N N N N N N -49.842 -28.716 6.152 4.467 1.788 1.717 H13 A1D3A 23 A1D3A H4 H6 H 0 1 N N N N N N -43.667 -28.478 2.401 -1.334 -0.914 -1.151 H4 A1D3A 24 A1D3A H6 H7 H 0 1 N N N N N N -44.090 -29.484 -0.144 -1.848 0.831 -2.620 H6 A1D3A 25 A1D3A H5 H8 H 0 1 N N N N N N -44.760 -27.917 0.422 -3.281 1.030 -1.561 H5 A1D3A 26 A1D3A H7 H9 H 0 1 N N N N N N -46.773 -29.025 -0.204 -1.548 3.106 -1.890 H7 A1D3A 27 A1D3A H8 H10 H 0 1 N N N N N N -46.135 -30.644 0.243 -2.216 2.761 -0.259 H8 A1D3A 28 A1D3A H9 H11 H 0 1 N N N N N N -47.221 -28.436 2.036 0.482 1.899 -1.439 H9 A1D3A 29 A1D3A H10 H12 H 0 1 N N N N N N -47.376 -30.218 2.207 0.156 2.640 0.157 H10 A1D3A 30 A1D3A H11 H13 H 0 1 N N N N N N -43.378 -29.410 6.657 1.551 -3.024 -1.634 H11 A1D3A 31 A1D3A H12 H14 H 0 1 N N N N N N -47.978 -28.843 7.938 5.058 -0.425 0.597 H12 A1D3A 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3A C5 C4 SING N N 1 A1D3A C5 C6 SING N N 2 A1D3A C4 C3 SING N N 3 A1D3A C1 O1 SING N N 4 A1D3A O1 C2 SING N N 5 A1D3A C6 N1 SING N N 6 A1D3A C3 C2 SING N N 7 A1D3A C3 N1 SING N N 8 A1D3A C2 O2 DOUB N N 9 A1D3A N1 C7 SING N N 10 A1D3A C7 N2 DOUB Y N 11 A1D3A C7 C12 SING Y N 12 A1D3A C11 C12 SING Y N 13 A1D3A C11 C10 DOUB Y N 14 A1D3A N2 C8 SING Y N 15 A1D3A C12 C9 DOUB Y N 16 A1D3A C10 N4 SING Y N 17 A1D3A C8 N3 DOUB Y N 18 A1D3A C9 N4 SING Y N 19 A1D3A C9 N3 SING Y N 20 A1D3A C11 H14 SING N N 21 A1D3A C1 H1 SING N N 22 A1D3A C1 H3 SING N N 23 A1D3A C1 H2 SING N N 24 A1D3A C10 H13 SING N N 25 A1D3A C3 H4 SING N N 26 A1D3A C4 H6 SING N N 27 A1D3A C4 H5 SING N N 28 A1D3A C5 H7 SING N N 29 A1D3A C5 H8 SING N N 30 A1D3A C6 H9 SING N N 31 A1D3A C6 H10 SING N N 32 A1D3A C8 H11 SING N N 33 A1D3A N4 H12 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3A SMILES ACDLabs 14.52 "O=C(OC)C1CCCN1c1ncnc2[NH]ccc12" A1D3A InChI InChI 1.06 "InChI=1S/C12H14N4O2/c1-18-12(17)9-3-2-6-16(9)11-8-4-5-13-10(8)14-7-15-11/h4-5,7,9H,2-3,6H2,1H3,(H,13,14,15)/t9-/m1/s1" A1D3A InChIKey InChI 1.06 CCAIDZXBDBPSCL-SECBINFHSA-N A1D3A SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@H]1CCCN1c2ncnc3[nH]ccc23" A1D3A SMILES CACTVS 3.385 "COC(=O)[CH]1CCCN1c2ncnc3[nH]ccc23" A1D3A SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COC(=O)[C@H]1CCCN1c2c3cc[nH]c3ncn2" A1D3A SMILES "OpenEye OEToolkits" 3.1.0.0 "COC(=O)C1CCCN1c2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3A "SYSTEMATIC NAME" ACDLabs 14.52 "methyl 1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-D-prolinate" A1D3A "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "methyl (2~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidine-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3A "Create component" 2026-09-01 RCSB A1D3A "Initial release" 2026-11-04 RCSB #