data_A1D3B # _chem_comp.id A1D3B _chem_comp.name "N-{[3-(cyclopentyloxy)phenyl]methyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15MW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3B C13 C1 C 0 1 Y N N N N N -44.231 -32.349 -0.510 -2.011 -0.924 -0.547 C13 A1D3B 1 A1D3B C18 C2 C 0 1 Y N N N N N -48.261 -28.732 4.631 5.594 -0.738 -0.999 C18 A1D3B 2 A1D3B C17 C3 C 0 1 Y N N N N N -48.872 -28.597 5.854 6.828 -0.202 -1.015 C17 A1D3B 3 A1D3B C16 C4 C 0 1 Y N N N N N -46.689 -28.953 6.301 5.573 1.261 0.131 C16 A1D3B 4 A1D3B C15 C5 C 0 1 Y N N N N N -44.496 -29.335 6.140 3.759 2.239 1.149 C15 A1D3B 5 A1D3B C19 C6 C 0 1 Y N N N N N -46.866 -28.970 4.894 4.741 0.184 -0.260 C19 A1D3B 6 A1D3B C11 C7 C 0 1 N N N N N N -43.390 -35.611 -4.423 -7.123 1.814 -1.211 C11 A1D3B 7 A1D3B C12 C8 C 0 1 N N N N N N -43.203 -36.199 -3.020 -6.478 0.437 -1.470 C12 A1D3B 8 A1D3B C1 C9 C 0 1 N N N N N N -45.698 -29.290 2.662 2.471 -0.885 -0.275 C1 A1D3B 9 A1D3B C10 C10 C 0 1 N N N N N N -44.837 -35.112 -4.498 -6.971 2.024 0.316 C10 A1D3B 10 A1D3B C14 C11 C 0 1 Y N N N N N -45.679 -29.195 4.151 3.387 0.215 0.107 C14 A1D3B 11 A1D3B C2 C12 C 0 1 N N N N N N -44.442 -30.148 0.724 0.268 -1.925 -0.291 C2 A1D3B 12 A1D3B C3 C13 C 0 1 Y N N N N N -44.970 -31.527 0.360 -1.115 -1.631 0.232 C3 A1D3B 13 A1D3B C4 C14 C 0 1 Y N N N N N -46.183 -32.013 0.903 -1.485 -2.069 1.490 C4 A1D3B 14 A1D3B C5 C15 C 0 1 Y N N N N N -46.647 -33.298 0.569 -2.753 -1.801 1.972 C5 A1D3B 15 A1D3B C6 C16 C 0 1 Y N N N N N -45.909 -34.105 -0.315 -3.653 -1.095 1.197 C6 A1D3B 16 A1D3B C7 C17 C 0 1 Y N N N N N -44.696 -33.624 -0.864 -3.282 -0.650 -0.063 C7 A1D3B 17 A1D3B C8 C18 C 0 1 N N N N N N -44.328 -35.603 -2.171 -5.492 0.190 -0.315 C8 A1D3B 18 A1D3B C9 C19 C 0 1 N N N N N N -45.493 -35.476 -3.164 -5.573 1.425 0.605 C9 A1D3B 19 A1D3B N1 N1 N 0 1 N N N N N N -44.627 -29.890 2.137 1.174 -0.837 0.087 N1 A1D3B 20 A1D3B N2 N2 N 0 1 Y N N N N N -44.512 -29.388 4.807 2.948 1.259 0.807 N2 A1D3B 21 A1D3B N3 N3 N 0 1 Y N N N N N -45.520 -29.135 6.970 5.037 2.253 0.828 N3 A1D3B 22 A1D3B N4 N4 N 0 1 Y N N N N N -47.923 -28.709 6.854 6.828 0.991 -0.344 N4 A1D3B 23 A1D3B O1 O1 O 0 1 N N N N N N -46.651 -28.897 1.996 2.889 -1.829 -0.915 O1 A1D3B 24 A1D3B O2 O2 O 0 1 N N N N N N -43.891 -34.319 -1.727 -4.165 0.046 -0.826 O2 A1D3B 25 A1D3B H16 H1 H 0 1 N N N N N N -43.293 -31.994 -0.911 -1.721 -0.581 -1.529 H16 A1D3B 26 A1D3B H20 H2 H 0 1 N N N N N N -48.734 -28.671 3.662 5.293 -1.672 -1.451 H20 A1D3B 27 A1D3B H19 H3 H 0 1 N N N N N N -49.927 -28.430 6.010 7.691 -0.647 -1.487 H19 A1D3B 28 A1D3B H17 H4 H 0 1 N N N N N N -43.531 -29.471 6.606 3.360 3.066 1.718 H17 A1D3B 29 A1D3B H12 H5 H 0 1 N N N N N N -43.215 -36.384 -5.185 -6.592 2.593 -1.758 H12 A1D3B 30 A1D3B H13 H6 H 0 1 N N N N N N -42.692 -34.776 -4.581 -8.176 1.801 -1.494 H13 A1D3B 31 A1D3B H15 H7 H 0 1 N N N N N N -43.284 -37.296 -3.049 -7.244 -0.338 -1.480 H15 A1D3B 32 A1D3B H14 H8 H 0 1 N N N N N N -42.222 -35.914 -2.612 -5.944 0.448 -2.421 H14 A1D3B 33 A1D3B H11 H9 H 0 1 N N N N N N -44.856 -34.022 -4.646 -6.997 3.085 0.565 H11 A1D3B 34 A1D3B H10 H10 H 0 1 N N N N N N -45.366 -35.604 -5.328 -7.745 1.480 0.859 H10 A1D3B 35 A1D3B H3 H11 H 0 1 N N N N N N -43.370 -30.096 0.484 0.626 -2.861 0.136 H3 A1D3B 36 A1D3B H2 H12 H 0 1 N N N N N N -44.985 -29.388 0.143 0.235 -2.010 -1.377 H2 A1D3B 37 A1D3B H4 H13 H 0 1 N N N N N N -46.756 -31.394 1.578 -0.783 -2.622 2.096 H4 A1D3B 38 A1D3B H5 H14 H 0 1 N N N N N N -47.571 -33.665 0.992 -3.040 -2.144 2.955 H5 A1D3B 39 A1D3B H6 H15 H 0 1 N N N N N N -46.267 -35.090 -0.575 -4.643 -0.887 1.575 H6 A1D3B 40 A1D3B H7 H16 H 0 1 N N N N N N -44.592 -36.272 -1.339 -5.779 -0.706 0.235 H7 A1D3B 41 A1D3B H8 H17 H 0 1 N N N N N N -46.188 -34.685 -2.846 -4.791 2.141 0.352 H8 A1D3B 42 A1D3B H9 H18 H 0 1 N N N N N N -46.036 -36.429 -3.247 -5.494 1.127 1.651 H9 A1D3B 43 A1D3B H1 H19 H 0 1 N N N N N N -43.903 -30.181 2.762 0.840 -0.083 0.597 H1 A1D3B 44 A1D3B H18 H20 H 0 1 N N N N N N -48.107 -28.625 7.833 7.603 1.561 -0.223 H18 A1D3B 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3B C10 C11 SING N N 1 A1D3B C10 C9 SING N N 2 A1D3B C11 C12 SING N N 3 A1D3B C9 C8 SING N N 4 A1D3B C12 C8 SING N N 5 A1D3B C8 O2 SING N N 6 A1D3B O2 C7 SING N N 7 A1D3B C7 C13 DOUB Y N 8 A1D3B C7 C6 SING Y N 9 A1D3B C13 C3 SING Y N 10 A1D3B C6 C5 DOUB Y N 11 A1D3B C3 C2 SING N N 12 A1D3B C3 C4 DOUB Y N 13 A1D3B C5 C4 SING Y N 14 A1D3B C2 N1 SING N N 15 A1D3B O1 C1 DOUB N N 16 A1D3B N1 C1 SING N N 17 A1D3B C1 C14 SING N N 18 A1D3B C14 N2 DOUB Y N 19 A1D3B C14 C19 SING Y N 20 A1D3B C18 C19 SING Y N 21 A1D3B C18 C17 DOUB Y N 22 A1D3B N2 C15 SING Y N 23 A1D3B C19 C16 DOUB Y N 24 A1D3B C17 N4 SING Y N 25 A1D3B C15 N3 DOUB Y N 26 A1D3B C16 N4 SING Y N 27 A1D3B C16 N3 SING Y N 28 A1D3B C13 H16 SING N N 29 A1D3B C18 H20 SING N N 30 A1D3B C17 H19 SING N N 31 A1D3B C15 H17 SING N N 32 A1D3B C11 H12 SING N N 33 A1D3B C11 H13 SING N N 34 A1D3B C12 H15 SING N N 35 A1D3B C12 H14 SING N N 36 A1D3B C10 H11 SING N N 37 A1D3B C10 H10 SING N N 38 A1D3B C2 H3 SING N N 39 A1D3B C2 H2 SING N N 40 A1D3B C4 H4 SING N N 41 A1D3B C5 H5 SING N N 42 A1D3B C6 H6 SING N N 43 A1D3B C8 H7 SING N N 44 A1D3B C9 H8 SING N N 45 A1D3B C9 H9 SING N N 46 A1D3B N1 H1 SING N N 47 A1D3B N4 H18 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3B SMILES ACDLabs 14.52 "O=C(NCc1cccc(OC2CCCC2)c1)c1ncnc2[NH]ccc12" A1D3B InChI InChI 1.06 "InChI=1S/C19H20N4O2/c24-19(17-16-8-9-20-18(16)23-12-22-17)21-11-13-4-3-7-15(10-13)25-14-5-1-2-6-14/h3-4,7-10,12,14H,1-2,5-6,11H2,(H,21,24)(H,20,22,23)" A1D3B InChIKey InChI 1.06 WVTDOQRCAOVLJK-UHFFFAOYSA-N A1D3B SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1cccc(OC2CCCC2)c1)c3ncnc4[nH]ccc34" A1D3B SMILES CACTVS 3.385 "O=C(NCc1cccc(OC2CCCC2)c1)c3ncnc4[nH]ccc34" A1D3B SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(cc(c1)OC2CCCC2)CNC(=O)c3c4cc[nH]c4ncn3" A1D3B SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(cc(c1)OC2CCCC2)CNC(=O)c3c4cc[nH]c4ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3B "SYSTEMATIC NAME" ACDLabs 14.52 "N-{[3-(cyclopentyloxy)phenyl]methyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1D3B "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(3-cyclopentyloxyphenyl)methyl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3B "Create component" 2026-09-01 RCSB A1D3B "Initial release" 2026-11-04 RCSB #