data_A1D3F # _chem_comp.id A1D3F _chem_comp.name "(3R,6R)-6-methyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.280 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15KG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3F C11 C1 C 0 1 Y N N N N N -41.053 -34.093 -7.491 2.354 0.489 0.024 C11 A1D3F 1 A1D3F C12 C2 C 0 1 N N N N N N -43.091 -33.446 -3.092 -1.927 -0.471 0.641 C12 A1D3F 2 A1D3F C1 C3 C 0 1 N N N N N N -45.482 -34.995 -0.755 -5.515 -0.316 0.217 C1 A1D3F 3 A1D3F C10 C4 C 0 1 Y N N N N N -41.263 -32.883 -8.240 2.861 1.794 0.446 C10 A1D3F 4 A1D3F C2 C5 C 0 1 N N R N N N -45.099 -34.673 -2.204 -4.191 0.446 0.297 C2 A1D3F 5 A1D3F C3 C6 C 0 1 N N N N N N -44.591 -35.904 -2.966 -3.707 0.768 -1.117 C3 A1D3F 6 A1D3F C4 C7 C 0 1 N N N N N N -44.067 -35.471 -4.335 -2.281 1.324 -1.037 C4 A1D3F 7 A1D3F C5 C8 C 0 1 N N R N N N -42.855 -34.530 -4.165 -1.350 0.202 -0.571 C5 A1D3F 8 A1D3F C6 C9 C 0 1 Y N N N N N -41.520 -34.653 -6.275 1.090 -0.032 -0.293 C6 A1D3F 9 A1D3F C7 C10 C 0 1 Y N N N N N -40.184 -36.519 -6.686 2.082 -2.074 -0.704 C7 A1D3F 10 A1D3F C8 C11 C 0 1 Y N N N N N -40.125 -34.895 -8.213 3.472 -0.363 -0.043 C8 A1D3F 11 A1D3F C9 C12 C 0 1 Y N N N N N -40.482 -32.973 -9.364 4.189 1.665 0.597 C9 A1D3F 12 A1D3F N1 N1 N 0 1 N N N N N N -42.434 -33.978 -5.453 -0.039 0.765 -0.237 N1 A1D3F 13 A1D3F N2 N2 N 0 1 Y N N N N N -41.059 -35.876 -5.903 1.006 -1.310 -0.649 N2 A1D3F 14 A1D3F N3 N3 N 0 1 Y N N N N N -39.658 -36.123 -7.849 3.284 -1.631 -0.405 N3 A1D3F 15 A1D3F N4 N4 N 0 1 Y N N N N N -39.802 -34.179 -9.346 4.566 0.379 0.308 N4 A1D3F 16 A1D3F N5 N5 N 0 1 N N N N N N -44.124 -33.582 -2.237 -3.207 -0.368 1.000 N5 A1D3F 17 A1D3F O1 O1 O 0 1 N N N N N N -42.329 -32.482 -3.023 -1.191 -1.149 1.327 O1 A1D3F 18 A1D3F H3 H1 H 0 1 N N N N N N -45.838 -34.081 -0.257 -5.366 -1.248 -0.329 H3 A1D3F 19 A1D3F H1 H2 H 0 1 N N N N N N -46.280 -35.752 -0.746 -5.868 -0.537 1.224 H1 A1D3F 20 A1D3F H2 H3 H 0 1 N N N N N N -44.602 -35.384 -0.221 -6.255 0.294 -0.302 H2 A1D3F 21 A1D3F H14 H4 H 0 1 N N N N N N -41.911 -32.062 -7.970 2.279 2.690 0.606 H14 A1D3F 22 A1D3F H4 H5 H 0 1 N N N N N N -46.012 -34.330 -2.713 -4.343 1.377 0.843 H4 A1D3F 23 A1D3F H6 H6 H 0 1 N N N N N N -45.415 -36.620 -3.098 -3.708 -0.141 -1.720 H6 A1D3F 24 A1D3F H5 H7 H 0 1 N N N N N N -43.780 -36.380 -2.396 -4.366 1.508 -1.570 H5 A1D3F 25 A1D3F H8 H8 H 0 1 N N N N N N -44.864 -34.943 -4.879 -1.969 1.675 -2.021 H8 A1D3F 26 A1D3F H7 H9 H 0 1 N N N N N N -43.760 -36.360 -4.905 -2.247 2.148 -0.325 H7 A1D3F 27 A1D3F H9 H10 H 0 1 N N N N N N -42.029 -35.155 -3.794 -1.235 -0.529 -1.371 H9 A1D3F 28 A1D3F H11 H11 H 0 1 N N N N N N -39.860 -37.486 -6.331 1.969 -3.107 -0.997 H11 A1D3F 29 A1D3F H13 H12 H 0 1 N N N N N N -40.409 -32.224 -10.138 4.859 2.455 0.902 H13 A1D3F 30 A1D3F H10 H13 H 0 1 N N N N N N -42.032 -33.083 -5.259 0.036 1.696 0.024 H10 A1D3F 31 A1D3F H12 H14 H 0 1 N N N N N N -39.167 -34.487 -10.054 5.476 0.044 0.347 H12 A1D3F 32 A1D3F H15 H15 H 0 1 N N N N N N -44.236 -32.861 -1.553 -3.503 -0.867 1.778 H15 A1D3F 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3F C9 N4 SING Y N 1 A1D3F C9 C10 DOUB Y N 2 A1D3F N4 C8 SING Y N 3 A1D3F C10 C11 SING Y N 4 A1D3F C8 N3 DOUB Y N 5 A1D3F C8 C11 SING Y N 6 A1D3F N3 C7 SING Y N 7 A1D3F C11 C6 DOUB Y N 8 A1D3F C7 N2 DOUB Y N 9 A1D3F C6 N2 SING Y N 10 A1D3F C6 N1 SING N N 11 A1D3F N1 C5 SING N N 12 A1D3F C4 C5 SING N N 13 A1D3F C4 C3 SING N N 14 A1D3F C5 C12 SING N N 15 A1D3F C12 O1 DOUB N N 16 A1D3F C12 N5 SING N N 17 A1D3F C3 C2 SING N N 18 A1D3F N5 C2 SING N N 19 A1D3F C2 C1 SING N N 20 A1D3F C1 H3 SING N N 21 A1D3F C1 H1 SING N N 22 A1D3F C1 H2 SING N N 23 A1D3F C10 H14 SING N N 24 A1D3F C2 H4 SING N N 25 A1D3F C3 H6 SING N N 26 A1D3F C3 H5 SING N N 27 A1D3F C4 H8 SING N N 28 A1D3F C4 H7 SING N N 29 A1D3F C5 H9 SING N N 30 A1D3F C7 H11 SING N N 31 A1D3F C9 H13 SING N N 32 A1D3F N1 H10 SING N N 33 A1D3F N4 H12 SING N N 34 A1D3F N5 H15 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3F SMILES ACDLabs 14.52 "CC1CCC(Nc2ncnc3[NH]ccc23)C(=O)N1" A1D3F InChI InChI 1.06 "InChI=1S/C12H15N5O/c1-7-2-3-9(12(18)16-7)17-11-8-4-5-13-10(8)14-6-15-11/h4-7,9H,2-3H2,1H3,(H,16,18)(H2,13,14,15,17)/t7-,9-/m1/s1" A1D3F InChIKey InChI 1.06 WXZBKJXYGONZCR-VXNVDRBHSA-N A1D3F SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CC[C@@H](Nc2ncnc3[nH]ccc23)C(=O)N1" A1D3F SMILES CACTVS 3.385 "C[CH]1CC[CH](Nc2ncnc3[nH]ccc23)C(=O)N1" A1D3F SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H]1CC[C@H](C(=O)N1)Nc2c3cc[nH]c3ncn2" A1D3F SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CCC(C(=O)N1)Nc2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3F "SYSTEMATIC NAME" ACDLabs 14.52 "(3R,6R)-6-methyl-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-2-one" A1D3F "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R},6~{R})-6-methyl-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)piperidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3F "Create component" 2026-09-01 RCSB A1D3F "Initial release" 2026-11-04 RCSB #