data_A1D3I # _chem_comp.id A1D3I _chem_comp.name "[(2R)-2-(2-hydroxy-2,3-dihydro-1H-inden-2-yl)pyrrolidin-1-yl](7H-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.398 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15KR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3I C13 C1 C 0 1 N N N N N N -47.735 -29.130 0.511 -3.275 -0.425 1.298 C13 A1D3I 1 A1D3I C18 C2 C 0 1 Y N N N N N -48.993 -28.416 -2.914 -3.869 1.422 -1.834 C18 A1D3I 2 A1D3I C17 C3 C 0 1 Y N N N N N -50.392 -28.574 -2.799 -5.184 1.841 -1.773 C17 A1D3I 3 A1D3I C16 C4 C 0 1 Y N N N N N -50.979 -28.928 -1.559 -5.957 1.528 -0.669 C16 A1D3I 4 A1D3I C15 C5 C 0 1 Y N N N N N -50.173 -29.131 -0.418 -5.413 0.797 0.369 C15 A1D3I 5 A1D3I C19 C6 C 0 1 Y N N N N N -48.207 -28.619 -1.767 -3.322 0.689 -0.794 C19 A1D3I 6 A1D3I C20 C7 C 0 1 N N N N N N -46.711 -28.513 -1.645 -1.927 0.119 -0.620 C20 A1D3I 7 A1D3I C11 C8 C 0 1 N N R N N N -45.118 -28.954 0.441 -0.972 -1.458 1.114 C11 A1D3I 8 A1D3I C12 C9 C 0 1 N N N N N N -46.489 -28.422 -0.103 -1.805 -0.194 0.887 C12 A1D3I 9 A1D3I C1 C10 C 0 1 N N N N N N -45.506 -29.836 2.753 1.263 -0.387 0.737 C1 A1D3I 10 A1D3I C10 C11 C 0 1 N N N N N N -43.900 -28.137 -0.008 -1.679 -2.676 0.484 C10 A1D3I 11 A1D3I C14 C12 C 0 1 Y N N N N N -48.783 -28.970 -0.554 -4.095 0.376 0.309 C14 A1D3I 12 A1D3I C2 C13 C 0 1 Y N N N N N -45.362 -29.612 4.231 2.487 -0.285 -0.090 C2 A1D3I 13 A1D3I C3 C14 C 0 1 Y N N N N N -44.056 -29.504 6.150 3.776 -1.020 -1.857 C3 A1D3I 14 A1D3I C4 C15 C 0 1 Y N N N N N -46.243 -29.109 6.404 4.620 0.730 -0.631 C4 A1D3I 15 A1D3I C5 C16 C 0 1 Y N N N N N -48.463 -28.810 6.021 4.813 2.326 0.934 C5 A1D3I 16 A1D3I C6 C17 C 0 1 Y N N N N N -47.908 -29.103 4.803 3.636 1.726 1.190 C6 A1D3I 17 A1D3I C7 C18 C 0 1 Y N N N N N -46.499 -29.296 5.020 3.470 0.677 0.191 C7 A1D3I 18 A1D3I C8 C19 C 0 1 N N N N N N -44.381 -27.643 2.306 0.460 -2.376 -0.568 C8 A1D3I 19 A1D3I C9 C20 C 0 1 N N N N N N -43.729 -27.065 1.058 -0.499 -3.498 -0.101 C9 A1D3I 20 A1D3I N1 N1 N 0 1 Y N N N N N -44.149 -29.712 4.829 2.688 -1.107 -1.118 N1 A1D3I 21 A1D3I N2 N2 N 0 1 Y N N N N N -45.028 -29.203 7.018 4.722 -0.131 -1.633 N2 A1D3I 22 A1D3I N3 N3 N 0 1 Y N N N N N -47.463 -28.817 6.979 5.407 1.744 -0.153 N3 A1D3I 23 A1D3I N4 N4 N 0 1 N N N N N N -45.043 -28.887 1.906 0.334 -1.321 0.454 N4 A1D3I 24 A1D3I O1 O1 O 0 1 N N N N N N -46.051 -30.865 2.360 1.097 0.372 1.671 O1 A1D3I 25 A1D3I O2 O2 O 0 1 N N N N N N -46.632 -27.045 0.223 -1.248 0.916 1.593 O2 A1D3I 26 A1D3I H14 H1 H 0 1 N N N N N N -48.045 -28.641 1.446 -3.526 -1.483 1.227 H14 A1D3I 27 A1D3I H13 H2 H 0 1 N N N N N N -47.529 -30.193 0.704 -3.445 -0.063 2.311 H13 A1D3I 28 A1D3I H18 H3 H 0 1 N N N N N N -48.540 -28.147 -3.857 -3.266 1.666 -2.696 H18 A1D3I 29 A1D3I H17 H4 H 0 1 N N N N N N -51.020 -28.424 -3.665 -5.607 2.413 -2.586 H17 A1D3I 30 A1D3I H16 H5 H 0 1 N N N N N N -52.050 -29.043 -1.486 -6.985 1.854 -0.618 H16 A1D3I 31 A1D3I H15 H6 H 0 1 N N N N N N -50.611 -29.402 0.531 -6.017 0.553 1.231 H15 A1D3I 32 A1D3I H19 H7 H 0 1 N N N N N N -46.216 -29.402 -2.064 -1.815 -0.793 -1.206 H19 A1D3I 33 A1D3I H20 H8 H 0 1 N N N N N N -46.336 -27.612 -2.152 -1.178 0.854 -0.915 H20 A1D3I 34 A1D3I H11 H9 H 0 1 N N N N N N -44.991 -29.995 0.109 -0.832 -1.622 2.182 H11 A1D3I 35 A1D3I H10 H10 H 0 1 N N N N N N -43.005 -28.775 -0.062 -2.210 -3.250 1.243 H10 A1D3I 36 A1D3I H9 H11 H 0 1 N N N N N N -44.083 -27.679 -0.991 -2.358 -2.361 -0.308 H9 A1D3I 37 A1D3I H1 H12 H 0 1 N N N N N N -43.064 -29.591 6.569 3.895 -1.705 -2.683 H1 A1D3I 38 A1D3I H3 H13 H 0 1 N N N N N N -49.508 -28.607 6.204 5.225 3.149 1.498 H3 A1D3I 39 A1D3I H4 H14 H 0 1 N N N N N N -48.429 -29.175 3.860 2.947 1.974 1.983 H4 A1D3I 40 A1D3I H6 H15 H 0 1 N N N N N N -43.617 -27.850 3.070 1.485 -2.745 -0.609 H6 A1D3I 41 A1D3I H5 H16 H 0 1 N N N N N N -45.120 -26.935 2.709 0.155 -1.998 -1.545 H5 A1D3I 42 A1D3I H8 H17 H 0 1 N N N N N N -42.662 -26.864 1.237 -0.034 -4.115 0.669 H8 A1D3I 43 A1D3I H7 H18 H 0 1 N N N N N N -44.232 -26.135 0.755 -0.827 -4.108 -0.942 H7 A1D3I 44 A1D3I H2 H19 H 0 1 N N N N N N -47.605 -28.636 7.952 6.262 2.008 -0.528 H2 A1D3I 45 A1D3I H12 H20 H 0 1 N N N N N N -46.507 -26.926 1.157 -1.765 1.730 1.515 H12 A1D3I 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3I C18 C17 DOUB Y N 1 A1D3I C18 C19 SING Y N 2 A1D3I C17 C16 SING Y N 3 A1D3I C19 C20 SING N N 4 A1D3I C19 C14 DOUB Y N 5 A1D3I C20 C12 SING N N 6 A1D3I C16 C15 DOUB Y N 7 A1D3I C14 C15 SING Y N 8 A1D3I C14 C13 SING N N 9 A1D3I C12 O2 SING N N 10 A1D3I C12 C11 SING N N 11 A1D3I C12 C13 SING N N 12 A1D3I C10 C11 SING N N 13 A1D3I C10 C9 SING N N 14 A1D3I C11 N4 SING N N 15 A1D3I C9 C8 SING N N 16 A1D3I N4 C8 SING N N 17 A1D3I N4 C1 SING N N 18 A1D3I O1 C1 DOUB N N 19 A1D3I C1 C2 SING N N 20 A1D3I C2 N1 DOUB Y N 21 A1D3I C2 C7 SING Y N 22 A1D3I C6 C7 SING Y N 23 A1D3I C6 C5 DOUB Y N 24 A1D3I N1 C3 SING Y N 25 A1D3I C7 C4 DOUB Y N 26 A1D3I C5 N3 SING Y N 27 A1D3I C3 N2 DOUB Y N 28 A1D3I C4 N3 SING Y N 29 A1D3I C4 N2 SING Y N 30 A1D3I C13 H14 SING N N 31 A1D3I C13 H13 SING N N 32 A1D3I C18 H18 SING N N 33 A1D3I C17 H17 SING N N 34 A1D3I C16 H16 SING N N 35 A1D3I C15 H15 SING N N 36 A1D3I C20 H19 SING N N 37 A1D3I C20 H20 SING N N 38 A1D3I C11 H11 SING N N 39 A1D3I C10 H10 SING N N 40 A1D3I C10 H9 SING N N 41 A1D3I C3 H1 SING N N 42 A1D3I C5 H3 SING N N 43 A1D3I C6 H4 SING N N 44 A1D3I C8 H6 SING N N 45 A1D3I C8 H5 SING N N 46 A1D3I C9 H8 SING N N 47 A1D3I C9 H7 SING N N 48 A1D3I N3 H2 SING N N 49 A1D3I O2 H12 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3I SMILES ACDLabs 14.52 "O=C(c1ncnc2[NH]ccc21)N1CCCC1C1(O)Cc2ccccc2C1" A1D3I InChI InChI 1.06 "InChI=1S/C20H20N4O2/c25-19(17-15-7-8-21-18(15)23-12-22-17)24-9-3-6-16(24)20(26)10-13-4-1-2-5-14(13)11-20/h1-2,4-5,7-8,12,16,26H,3,6,9-11H2,(H,21,22,23)/t16-/m1/s1" A1D3I InChIKey InChI 1.06 SQKWTJAVNDPVAJ-MRXNPFEDSA-N A1D3I SMILES_CANONICAL CACTVS 3.385 "OC1(Cc2ccccc2C1)[C@H]3CCCN3C(=O)c4ncnc5[nH]ccc45" A1D3I SMILES CACTVS 3.385 "OC1(Cc2ccccc2C1)[CH]3CCCN3C(=O)c4ncnc5[nH]ccc45" A1D3I SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CC(C2)([C@H]3CCCN3C(=O)c4c5cc[nH]c5ncn4)O" A1D3I SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CC(C2)(C3CCCN3C(=O)c4c5cc[nH]c5ncn4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3I "SYSTEMATIC NAME" ACDLabs 14.52 "[(2R)-2-(2-hydroxy-2,3-dihydro-1H-inden-2-yl)pyrrolidin-1-yl](7H-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" A1D3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(2~{R})-2-(2-oxidanyl-1,3-dihydroinden-2-yl)pyrrolidin-1-yl]-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3I "Create component" 2026-09-01 RCSB A1D3I "Initial release" 2026-11-04 RCSB #