data_A1D3J # _chem_comp.id A1D3J _chem_comp.name "4-[(2R)-2-(1,2-oxazol-3-yl)pyrrolidin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 255.275 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15KS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3J C13 C1 C 0 1 Y N N N N N -46.492 -29.097 6.434 2.328 0.588 0.215 C13 A1D3J 1 A1D3J C11 C2 C 0 1 Y N N N N N -48.098 -28.989 4.786 1.564 0.451 -1.944 C11 A1D3J 2 A1D3J C12 C3 C 0 1 Y N N N N N -48.706 -28.823 6.007 2.883 0.197 -1.923 C12 A1D3J 3 A1D3J C1 C4 C 0 1 Y N N N N N -44.287 -29.396 6.263 1.084 1.069 2.091 C1 A1D3J 4 A1D3J C10 C5 C 0 1 Y N N N N N -46.686 -29.167 5.029 1.162 0.707 -0.562 C10 A1D3J 5 A1D3J C2 C6 C 0 1 Y N N N N N -45.497 -29.381 4.275 -0.046 1.020 0.080 C2 A1D3J 6 A1D3J C3 C7 C 0 1 N N N N N N -46.714 -29.490 2.089 -2.200 1.984 0.087 C3 A1D3J 7 A1D3J C4 C8 C 0 1 N N N N N N -46.275 -29.269 0.643 -3.580 1.383 -0.279 C4 A1D3J 8 A1D3J C5 C9 C 0 1 N N N N N N -44.750 -29.141 0.653 -3.259 -0.134 -0.326 C5 A1D3J 9 A1D3J C6 C10 C 0 1 N N R N N N -44.289 -29.510 2.064 -1.828 -0.169 -0.900 C6 A1D3J 10 A1D3J C7 C11 C 0 1 Y N N N N N -43.568 -30.833 2.035 -1.027 -1.247 -0.216 C7 A1D3J 11 A1D3J C8 C12 C 0 1 Y N N N N N -42.361 -31.144 1.351 -0.901 -2.595 -0.622 C8 A1D3J 12 A1D3J C9 C13 C 0 1 Y N N N N N -42.163 -32.465 1.637 -0.087 -3.144 0.312 C9 A1D3J 13 A1D3J N1 N1 N 0 1 Y N N N N N -44.312 -29.480 4.931 -0.034 1.190 1.399 N1 A1D3J 14 A1D3J N2 N2 N 0 1 N N N N N N -45.496 -29.475 2.876 -1.220 1.149 -0.641 N2 A1D3J 15 A1D3J N3 N3 N 0 1 Y N N N N N -44.060 -31.891 2.668 -0.309 -1.119 0.862 N3 A1D3J 16 A1D3J N4 N4 N 0 1 Y N N N N N -47.733 -28.893 6.993 3.352 0.283 -0.638 N4 A1D3J 17 A1D3J N5 N5 N 0 1 Y N N N N N -45.310 -29.211 7.097 2.239 0.781 1.531 N5 A1D3J 18 A1D3J O1 O1 O 0 1 Y N N N N N -43.166 -32.937 2.424 0.216 -2.163 1.174 O1 A1D3J 19 A1D3J H11 H1 H 0 1 N N N N N N -48.586 -28.987 3.823 0.923 0.459 -2.813 H11 A1D3J 20 A1D3J H12 H2 H 0 1 N N N N N N -49.762 -28.665 6.171 3.485 -0.031 -2.790 H12 A1D3J 21 A1D3J H1 H3 H 0 1 N N N N N N -43.314 -29.490 6.723 1.051 1.219 3.160 H1 A1D3J 22 A1D3J H2 H4 H 0 1 N N N N N N -47.389 -28.684 2.412 -2.136 3.020 -0.245 H2 A1D3J 23 A1D3J H3 H5 H 0 1 N N N N N N -47.224 -30.459 2.191 -2.029 1.920 1.162 H3 A1D3J 24 A1D3J H4 H6 H 0 1 N N N N N N -46.729 -28.349 0.247 -4.318 1.603 0.492 H4 A1D3J 25 A1D3J H5 H7 H 0 1 N N N N N N -46.578 -30.124 0.021 -3.916 1.742 -1.252 H5 A1D3J 26 A1D3J H7 H8 H 0 1 N N N N N N -44.307 -29.828 -0.083 -3.283 -0.564 0.676 H7 A1D3J 27 A1D3J H6 H9 H 0 1 N N N N N N -44.454 -28.109 0.415 -3.953 -0.654 -0.986 H6 A1D3J 28 A1D3J H8 H10 H 0 1 N N N N N N -43.591 -28.736 2.415 -1.863 -0.356 -1.974 H8 A1D3J 29 A1D3J H9 H11 H 0 1 N N N N N N -41.747 -30.491 0.749 -1.351 -3.077 -1.477 H9 A1D3J 30 A1D3J H10 H12 H 0 1 N N N N N N -41.327 -33.052 1.287 0.251 -4.168 0.354 H10 A1D3J 31 A1D3J H13 H13 H 0 1 N N N N N N -47.909 -28.807 7.974 4.275 0.147 -0.373 H13 A1D3J 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3J C4 C5 SING N N 1 A1D3J C4 C3 SING N N 2 A1D3J C5 C6 SING N N 3 A1D3J C8 C9 DOUB Y N 4 A1D3J C8 C7 SING Y N 5 A1D3J C9 O1 SING Y N 6 A1D3J C7 C6 SING N N 7 A1D3J C7 N3 DOUB Y N 8 A1D3J C6 N2 SING N N 9 A1D3J C3 N2 SING N N 10 A1D3J O1 N3 SING Y N 11 A1D3J N2 C2 SING N N 12 A1D3J C2 N1 DOUB Y N 13 A1D3J C2 C10 SING Y N 14 A1D3J C11 C10 SING Y N 15 A1D3J C11 C12 DOUB Y N 16 A1D3J N1 C1 SING Y N 17 A1D3J C10 C13 DOUB Y N 18 A1D3J C12 N4 SING Y N 19 A1D3J C1 N5 DOUB Y N 20 A1D3J C13 N4 SING Y N 21 A1D3J C13 N5 SING Y N 22 A1D3J C11 H11 SING N N 23 A1D3J C12 H12 SING N N 24 A1D3J C1 H1 SING N N 25 A1D3J C3 H2 SING N N 26 A1D3J C3 H3 SING N N 27 A1D3J C4 H4 SING N N 28 A1D3J C4 H5 SING N N 29 A1D3J C5 H7 SING N N 30 A1D3J C5 H6 SING N N 31 A1D3J C6 H8 SING N N 32 A1D3J C8 H9 SING N N 33 A1D3J C9 H10 SING N N 34 A1D3J N4 H13 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3J SMILES ACDLabs 14.52 "C1CN(C(C1)c1ccon1)c1ncnc2[NH]ccc21" A1D3J InChI InChI 1.06 "InChI=1S/C13H13N5O/c1-2-11(10-4-7-19-17-10)18(6-1)13-9-3-5-14-12(9)15-8-16-13/h3-5,7-8,11H,1-2,6H2,(H,14,15,16)/t11-/m1/s1" A1D3J InChIKey InChI 1.06 YGURNYPXRXZTGJ-LLVKDONJSA-N A1D3J SMILES_CANONICAL CACTVS 3.385 "C1C[C@@H](N(C1)c2ncnc3[nH]ccc23)c4ccon4" A1D3J SMILES CACTVS 3.385 "C1C[CH](N(C1)c2ncnc3[nH]ccc23)c4ccon4" A1D3J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC[C@@H]3c4ccon4" A1D3J SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCCC3c4ccon4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3J "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(2R)-2-(1,2-oxazol-3-yl)pyrrolidin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" A1D3J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[(2~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-2-yl]-1,2-oxazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3J "Create component" 2026-09-01 RCSB A1D3J "Initial release" 2026-11-04 RCSB #