data_A1D3K # _chem_comp.id A1D3K _chem_comp.name "N-[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15KY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3K C13 C1 C 0 1 Y N N N N N -46.713 -28.993 6.228 -5.057 0.955 0.050 C13 A1D3K 1 A1D3K C16 C2 C 0 1 Y N N N N N -46.894 -29.025 4.827 -4.125 -0.097 -0.113 C16 A1D3K 2 A1D3K C15 C3 C 0 1 Y N N N N N -48.291 -28.772 4.561 -4.904 -1.278 -0.463 C15 A1D3K 3 A1D3K C11 C4 C 0 1 Y N N N N N -45.711 -29.280 4.087 -2.762 0.179 0.077 C11 A1D3K 4 A1D3K C12 C5 C 0 1 Y N N N N N -44.523 -29.412 6.070 -3.314 2.369 0.544 C12 A1D3K 5 A1D3K C1 C6 C 0 1 N N N N N N -45.740 -29.402 2.605 -1.742 -0.884 -0.081 C1 A1D3K 6 A1D3K C10 C7 C 0 1 N N N N N N -46.024 -36.011 -1.935 6.549 0.695 -0.177 C10 A1D3K 7 A1D3K C14 C8 C 0 1 Y N N N N N -48.895 -28.618 5.785 -6.195 -0.900 -0.492 C14 A1D3K 8 A1D3K C2 C9 C 0 1 N N N N N N -44.485 -30.340 0.699 0.571 -1.650 -0.051 C2 A1D3K 9 A1D3K C3 C10 C 0 1 Y N N N N N -45.071 -31.692 0.314 1.939 -1.075 0.209 C3 A1D3K 10 A1D3K C4 C11 C 0 1 Y N N N N N -46.316 -32.139 0.812 2.460 -1.086 1.490 C4 A1D3K 11 A1D3K C5 C12 C 0 1 Y N N N N N -46.819 -33.395 0.438 3.714 -0.559 1.733 C5 A1D3K 12 A1D3K C6 C13 C 0 1 Y N N N N N -46.096 -34.206 -0.446 4.454 -0.018 0.692 C6 A1D3K 13 A1D3K C7 C14 C 0 1 Y N N N N N -44.857 -33.755 -0.955 3.931 -0.009 -0.596 C7 A1D3K 14 A1D3K C8 C15 C 0 1 Y N N N N N -44.345 -32.513 -0.561 2.672 -0.538 -0.833 C8 A1D3K 15 A1D3K C9 C16 C 0 1 N N N N N N -44.494 -35.871 -1.910 5.740 1.367 -1.295 C9 A1D3K 16 A1D3K N1 N1 N 0 1 N N N N N N -44.679 -30.050 2.101 -0.438 -0.599 0.105 N1 A1D3K 17 A1D3K N2 N2 N 0 1 Y N N N N N -44.537 -29.479 4.738 -2.410 1.421 0.403 N2 A1D3K 18 A1D3K N3 N3 N 0 1 Y N N N N N -45.550 -29.190 6.893 -4.604 2.157 0.380 N3 A1D3K 19 A1D3K N4 N4 N 0 1 Y N N N N N -47.945 -28.740 6.787 -6.299 0.430 -0.188 N4 A1D3K 20 A1D3K O1 O1 O 0 1 N N N N N N -46.701 -29.018 1.938 -2.081 -2.012 -0.379 O1 A1D3K 21 A1D3K O2 O2 O 0 1 N N N N N N -44.095 -34.512 -1.800 4.644 0.511 -1.633 O2 A1D3K 22 A1D3K O3 O3 O 0 1 N N N N N N -46.635 -35.415 -0.800 5.685 0.503 0.948 O3 A1D3K 23 A1D3K H14 H1 H 0 1 N N N N N N -48.766 -28.715 3.593 -4.519 -2.267 -0.662 H14 A1D3K 24 A1D3K H11 H2 H 0 1 N N N N N N -43.562 -29.555 6.541 -2.984 3.362 0.812 H11 A1D3K 25 A1D3K H10 H3 H 0 1 N N N N N N -46.410 -35.523 -2.842 6.922 -0.269 -0.522 H10 A1D3K 26 A1D3K H9 H4 H 0 1 N N N N N N -46.282 -37.080 -1.956 7.386 1.334 0.106 H9 A1D3K 27 A1D3K H13 H5 H 0 1 N N N N N N -49.947 -28.431 5.942 -7.026 -1.550 -0.722 H13 A1D3K 28 A1D3K H2 H6 H 0 1 N N N N N N -43.407 -30.345 0.482 0.530 -2.045 -1.066 H2 A1D3K 29 A1D3K H3 H7 H 0 1 N N N N N N -44.975 -29.557 0.102 0.372 -2.452 0.659 H3 A1D3K 30 A1D3K H4 H8 H 0 1 N N N N N N -46.883 -31.511 1.483 1.885 -1.507 2.302 H4 A1D3K 31 A1D3K H5 H9 H 0 1 N N N N N N -47.765 -33.736 0.832 4.119 -0.569 2.734 H5 A1D3K 32 A1D3K H6 H10 H 0 1 N N N N N N -43.386 -32.185 -0.933 2.263 -0.530 -1.832 H6 A1D3K 33 A1D3K H8 H11 H 0 1 N N N N N N -44.098 -36.430 -1.049 5.362 2.329 -0.948 H8 A1D3K 34 A1D3K H7 H12 H 0 1 N N N N N N -44.082 -36.290 -2.840 6.374 1.515 -2.169 H7 A1D3K 35 A1D3K H1 H13 H 0 1 N N N N N N -43.973 -30.354 2.741 -0.168 0.302 0.343 H1 A1D3K 36 A1D3K H12 H14 H 0 1 N N N N N N -48.127 -28.657 7.767 -7.131 0.927 -0.142 H12 A1D3K 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3K C10 C9 SING N N 1 A1D3K C10 O3 SING N N 2 A1D3K C9 O2 SING N N 3 A1D3K O2 C7 SING N N 4 A1D3K C7 C8 DOUB Y N 5 A1D3K C7 C6 SING Y N 6 A1D3K O3 C6 SING N N 7 A1D3K C8 C3 SING Y N 8 A1D3K C6 C5 DOUB Y N 9 A1D3K C3 C2 SING N N 10 A1D3K C3 C4 DOUB Y N 11 A1D3K C5 C4 SING Y N 12 A1D3K C2 N1 SING N N 13 A1D3K O1 C1 DOUB N N 14 A1D3K N1 C1 SING N N 15 A1D3K C1 C11 SING N N 16 A1D3K C11 N2 DOUB Y N 17 A1D3K C11 C16 SING Y N 18 A1D3K C15 C16 SING Y N 19 A1D3K C15 C14 DOUB Y N 20 A1D3K N2 C12 SING Y N 21 A1D3K C16 C13 DOUB Y N 22 A1D3K C14 N4 SING Y N 23 A1D3K C12 N3 DOUB Y N 24 A1D3K C13 N4 SING Y N 25 A1D3K C13 N3 SING Y N 26 A1D3K C15 H14 SING N N 27 A1D3K C12 H11 SING N N 28 A1D3K C10 H10 SING N N 29 A1D3K C10 H9 SING N N 30 A1D3K C14 H13 SING N N 31 A1D3K C2 H2 SING N N 32 A1D3K C2 H3 SING N N 33 A1D3K C4 H4 SING N N 34 A1D3K C5 H5 SING N N 35 A1D3K C8 H6 SING N N 36 A1D3K C9 H8 SING N N 37 A1D3K C9 H7 SING N N 38 A1D3K N1 H1 SING N N 39 A1D3K N4 H12 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3K SMILES ACDLabs 14.52 "O=C(NCc1ccc2OCCOc2c1)c1ncnc2[NH]ccc21" A1D3K InChI InChI 1.06 "InChI=1S/C16H14N4O3/c21-16(14-11-3-4-17-15(11)20-9-19-14)18-8-10-1-2-12-13(7-10)23-6-5-22-12/h1-4,7,9H,5-6,8H2,(H,18,21)(H,17,19,20)" A1D3K InChIKey InChI 1.06 FTZWPIMMIGJRHX-UHFFFAOYSA-N A1D3K SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1ccc2OCCOc2c1)c3ncnc4[nH]ccc34" A1D3K SMILES CACTVS 3.385 "O=C(NCc1ccc2OCCOc2c1)c3ncnc4[nH]ccc34" A1D3K SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1CNC(=O)c3c4cc[nH]c4ncn3)OCCO2" A1D3K SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1CNC(=O)c3c4cc[nH]c4ncn3)OCCO2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3K "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1D3K "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(2,3-dihydro-1,4-benzodioxin-6-ylmethyl)-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3K "Create component" 2026-09-01 RCSB A1D3K "Initial release" 2026-11-04 RCSB #