data_A1D3M # _chem_comp.id A1D3M _chem_comp.name "(3R)-N-phenyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 293.366 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3M C13 C1 C 0 1 Y N N N N N -47.959 -28.797 4.485 3.748 1.618 0.514 C13 A1D3M 1 A1D3M C17 C2 C 0 1 Y N N N N N -41.136 -31.843 -2.024 -6.205 -0.998 0.157 C17 A1D3M 2 A1D3M C16 C3 C 0 1 Y N N N N N -41.988 -31.219 -1.099 -4.947 -1.289 -0.333 C16 A1D3M 3 A1D3M C15 C4 C 0 1 N N N N N N -44.103 -28.778 1.966 -0.174 -0.626 -0.329 C15 A1D3M 4 A1D3M C11 C5 C 0 1 Y N N N N N -46.399 -29.029 6.158 4.539 -0.528 0.325 C11 A1D3M 5 A1D3M C12 C6 C 0 1 Y N N N N N -48.581 -28.695 5.707 5.079 1.618 0.695 C12 A1D3M 6 A1D3M C1 C7 C 0 1 Y N N N N N -40.091 -31.111 -2.614 -6.406 0.137 0.921 C1 A1D3M 7 A1D3M C10 C8 C 0 1 Y N N N N N -44.196 -29.332 6.011 3.303 -2.421 -0.104 C10 A1D3M 8 A1D3M C14 C9 C 0 1 Y N N N N N -46.558 -29.025 4.753 3.355 0.231 0.269 C14 A1D3M 9 A1D3M C2 C10 C 0 1 Y N N N N N -39.895 -29.759 -2.287 -5.348 0.984 1.198 C2 A1D3M 10 A1D3M C3 C11 C 0 1 Y N N N N N -40.741 -29.145 -1.359 -4.088 0.699 0.711 C3 A1D3M 11 A1D3M C4 C12 C 0 1 Y N N N N N -41.793 -29.861 -0.766 -3.882 -0.443 -0.053 C4 A1D3M 12 A1D3M C5 C13 C 0 1 N N R N N N -43.751 -29.726 0.812 -1.485 0.159 -0.250 C5 A1D3M 13 A1D3M C6 C14 C 0 1 N N N N N N -44.963 -29.907 -0.125 -1.454 1.299 -1.271 C6 A1D3M 14 A1D3M C7 C15 C 0 1 N N N N N N -46.178 -30.399 0.675 -0.244 2.194 -0.989 C7 A1D3M 15 A1D3M C8 C16 C 0 1 N N N N N N -46.504 -29.457 1.841 1.032 1.350 -1.047 C8 A1D3M 16 A1D3M C9 C17 C 0 1 Y N N N N N -45.354 -29.203 4.017 2.144 -0.429 0.014 C9 A1D3M 17 A1D3M N1 N1 N 0 1 N N N N N N -42.593 -29.169 0.141 -2.608 -0.734 -0.547 N1 A1D3M 18 A1D3M N2 N2 N 0 1 N N N N N N -45.299 -29.244 2.634 0.954 0.273 -0.052 N2 A1D3M 19 A1D3M N3 N3 N 0 1 Y N N N N N -44.184 -29.331 4.682 2.168 -1.746 -0.165 N3 A1D3M 20 A1D3M N4 N4 N 0 1 Y N N N N N -45.238 -29.193 6.834 4.461 -1.844 0.132 N4 A1D3M 21 A1D3M N5 N5 N 0 1 Y N N N N N -47.636 -28.844 6.711 5.563 0.341 0.584 N5 A1D3M 22 A1D3M H15 H1 H 0 1 N N N N N N -48.427 -28.721 3.514 3.093 2.476 0.548 H15 A1D3M 23 A1D3M H19 H2 H 0 1 N N N N N N -41.283 -32.882 -2.281 -7.034 -1.655 -0.061 H19 A1D3M 24 A1D3M H18 H3 H 0 1 N N N N N N -42.792 -31.777 -0.643 -4.792 -2.173 -0.933 H18 A1D3M 25 A1D3M H17 H4 H 0 1 N N N N N N -43.270 -28.751 2.684 -0.186 -1.430 0.407 H17 A1D3M 26 A1D3M H16 H5 H 0 1 N N N N N N -44.277 -27.767 1.568 -0.063 -1.049 -1.327 H16 A1D3M 27 A1D3M H14 H6 H 0 1 N N N N N N -49.637 -28.526 5.860 5.678 2.494 0.896 H14 A1D3M 28 A1D3M H1 H7 H 0 1 N N N N N N -39.434 -31.592 -3.324 -7.391 0.363 1.303 H1 A1D3M 29 A1D3M H12 H8 H 0 1 N N N N N N -43.236 -29.462 6.488 3.278 -3.490 -0.255 H12 A1D3M 30 A1D3M H2 H9 H 0 1 N N N N N N -39.096 -29.198 -2.749 -5.508 1.870 1.794 H2 A1D3M 31 A1D3M H3 H10 H 0 1 N N N N N N -40.584 -28.109 -1.096 -3.262 1.361 0.927 H3 A1D3M 32 A1D3M H5 H11 H 0 1 N N N N N N -43.493 -30.708 1.236 -1.603 0.571 0.752 H5 A1D3M 33 A1D3M H6 H12 H 0 1 N N N N N N -44.715 -30.645 -0.902 -1.376 0.886 -2.276 H6 A1D3M 34 A1D3M H7 H13 H 0 1 N N N N N N -45.204 -28.944 -0.598 -2.369 1.887 -1.188 H7 A1D3M 35 A1D3M H8 H14 H 0 1 N N N N N N -47.049 -30.453 0.005 -0.192 2.983 -1.739 H8 A1D3M 36 A1D3M H9 H15 H 0 1 N N N N N N -45.961 -31.400 1.075 -0.342 2.637 0.001 H9 A1D3M 37 A1D3M H10 H16 H 0 1 N N N N N N -46.861 -28.494 1.448 1.136 0.918 -2.042 H10 A1D3M 38 A1D3M H11 H17 H 0 1 N N N N N N -47.285 -29.908 2.471 1.894 1.981 -0.833 H11 A1D3M 39 A1D3M H4 H18 H 0 1 N N N N N N -41.977 -28.874 0.871 -2.467 -1.528 -1.086 H4 A1D3M 40 A1D3M H13 H19 H 0 1 N N N N N N -47.830 -28.820 7.692 6.496 0.089 0.676 H13 A1D3M 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3M C1 C2 DOUB Y N 1 A1D3M C1 C17 SING Y N 2 A1D3M C2 C3 SING Y N 3 A1D3M C17 C16 DOUB Y N 4 A1D3M C3 C4 DOUB Y N 5 A1D3M C16 C4 SING Y N 6 A1D3M C4 N1 SING N N 7 A1D3M C6 C7 SING N N 8 A1D3M C6 C5 SING N N 9 A1D3M N1 C5 SING N N 10 A1D3M C7 C8 SING N N 11 A1D3M C5 C15 SING N N 12 A1D3M C8 N2 SING N N 13 A1D3M C15 N2 SING N N 14 A1D3M N2 C9 SING N N 15 A1D3M C9 N3 DOUB Y N 16 A1D3M C9 C14 SING Y N 17 A1D3M C13 C14 SING Y N 18 A1D3M C13 C12 DOUB Y N 19 A1D3M N3 C10 SING Y N 20 A1D3M C14 C11 DOUB Y N 21 A1D3M C12 N5 SING Y N 22 A1D3M C10 N4 DOUB Y N 23 A1D3M C11 N5 SING Y N 24 A1D3M C11 N4 SING Y N 25 A1D3M C13 H15 SING N N 26 A1D3M C17 H19 SING N N 27 A1D3M C16 H18 SING N N 28 A1D3M C15 H17 SING N N 29 A1D3M C15 H16 SING N N 30 A1D3M C12 H14 SING N N 31 A1D3M C1 H1 SING N N 32 A1D3M C10 H12 SING N N 33 A1D3M C2 H2 SING N N 34 A1D3M C3 H3 SING N N 35 A1D3M C5 H5 SING N N 36 A1D3M C6 H6 SING N N 37 A1D3M C6 H7 SING N N 38 A1D3M C7 H8 SING N N 39 A1D3M C7 H9 SING N N 40 A1D3M C8 H10 SING N N 41 A1D3M C8 H11 SING N N 42 A1D3M N1 H4 SING N N 43 A1D3M N5 H13 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3M SMILES ACDLabs 14.52 "c1nc(c2cc[NH]c2n1)N1CCCC(C1)Nc1ccccc1" A1D3M InChI InChI 1.06 "InChI=1S/C17H19N5/c1-2-5-13(6-3-1)21-14-7-4-10-22(11-14)17-15-8-9-18-16(15)19-12-20-17/h1-3,5-6,8-9,12,14,21H,4,7,10-11H2,(H,18,19,20)/t14-/m1/s1" A1D3M InChIKey InChI 1.06 DJXHYVAKSBVIIK-CQSZACIVSA-N A1D3M SMILES_CANONICAL CACTVS 3.385 "C1C[C@H](CN(C1)c2ncnc3[nH]ccc23)Nc4ccccc4" A1D3M SMILES CACTVS 3.385 "C1C[CH](CN(C1)c2ncnc3[nH]ccc23)Nc4ccccc4" A1D3M SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)N[C@@H]2CCCN(C2)c3c4cc[nH]c4ncn3" A1D3M SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)NC2CCCN(C2)c3c4cc[nH]c4ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3M "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-N-phenyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-amine" A1D3M "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-~{N}-phenyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3M "Create component" 2026-09-01 RCSB A1D3M "Initial release" 2026-11-04 RCSB #