data_A1D3P # _chem_comp.id A1D3P _chem_comp.name "(2R)-3-methyl-2-{[6-(methylamino)pyrimidin-4-yl]amino}butan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 210.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15MT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3P C1 C1 C 0 1 N N N N N N -48.912 -28.845 5.841 2.561 2.766 0.319 C1 A1D3P 1 A1D3P C10 C2 C 0 1 Y N N N N N -44.246 -29.725 6.412 2.613 -1.990 -0.089 C10 A1D3P 2 A1D3P C2 C3 C 0 1 Y N N N N N -46.465 -29.246 6.087 2.604 0.306 0.108 C2 A1D3P 3 A1D3P C3 C4 C 0 1 Y N N N N N -46.338 -29.578 4.727 1.213 0.294 0.085 C3 A1D3P 4 A1D3P C4 C5 C 0 1 Y N N N N N -45.065 -29.996 4.287 0.566 -0.934 -0.019 C4 A1D3P 5 A1D3P C5 C6 C 0 1 N N R N N N -43.649 -31.001 2.487 -1.612 0.230 0.036 C5 A1D3P 6 A1D3P C6 C7 C 0 1 N N N N N N -43.956 -32.500 2.275 -1.760 0.835 -1.361 C6 A1D3P 7 A1D3P C7 C8 C 0 1 N N N N N N -43.096 -30.317 1.208 -2.996 -0.094 0.601 C7 A1D3P 8 A1D3P C8 C9 C 0 1 N N N N N N -41.736 -30.900 0.776 -2.845 -0.776 1.962 C8 A1D3P 9 A1D3P C9 C10 C 0 1 N N N N N N -42.931 -28.795 1.392 -3.795 1.201 0.766 C9 A1D3P 10 A1D3P N1 N1 N 0 1 N N N N N N -47.685 -28.823 6.625 3.295 1.502 0.222 N1 A1D3P 11 A1D3P N2 N2 N 0 1 N N N N N N -44.871 -30.341 2.943 -0.818 -0.999 -0.046 N2 A1D3P 12 A1D3P N3 N3 N 0 1 Y N N N N N -44.016 -30.074 5.143 1.297 -2.043 -0.109 N3 A1D3P 13 A1D3P N4 N4 N 0 1 Y N N N N N -45.409 -29.318 6.918 3.262 -0.848 0.019 N4 A1D3P 14 A1D3P O1 O1 O 0 1 N N N N N N -44.526 -33.080 3.430 -2.514 -0.053 -2.188 O1 A1D3P 15 A1D3P H1 H1 H 0 1 N N N N N N -49.746 -28.473 6.454 3.268 3.592 0.401 H1 A1D3P 16 A1D3P H3 H2 H 0 1 N N N N N N -48.793 -28.203 4.956 1.948 2.900 -0.573 H3 A1D3P 17 A1D3P H2 H3 H 0 1 N N N N N N -49.124 -29.876 5.521 1.920 2.747 1.201 H2 A1D3P 18 A1D3P H18 H4 H 0 1 N N N N N N -43.409 -29.778 7.093 3.176 -2.909 -0.159 H18 A1D3P 19 A1D3P H5 H5 H 0 1 N N N N N N -47.177 -29.516 4.050 0.649 1.213 0.156 H5 A1D3P 20 A1D3P H7 H6 H 0 1 N N N N N N -42.883 -30.919 3.272 -1.110 0.943 0.690 H7 A1D3P 21 A1D3P H9 H7 H 0 1 N N N N N N -44.661 -32.606 1.437 -2.277 1.792 -1.290 H9 A1D3P 22 A1D3P H8 H8 H 0 1 N N N N N N -43.020 -33.026 2.035 -0.772 0.987 -1.798 H8 A1D3P 23 A1D3P H11 H9 H 0 1 N N N N N N -43.815 -30.487 0.394 -3.522 -0.760 -0.083 H11 A1D3P 24 A1D3P H14 H10 H 0 1 N N N N N N -41.830 -31.987 0.638 -3.832 -1.007 2.364 H14 A1D3P 25 A1D3P H12 H11 H 0 1 N N N N N N -41.423 -30.436 -0.171 -2.276 -1.699 1.844 H12 A1D3P 26 A1D3P H13 H12 H 0 1 N N N N N N -40.985 -30.692 1.552 -2.320 -0.110 2.646 H13 A1D3P 27 A1D3P H17 H13 H 0 1 N N N N N N -43.891 -28.356 1.701 -4.742 0.984 1.260 H17 A1D3P 28 A1D3P H15 H14 H 0 1 N N N N N N -42.173 -28.599 2.165 -3.223 1.906 1.369 H15 A1D3P 29 A1D3P H16 H15 H 0 1 N N N N N N -42.611 -28.343 0.441 -3.989 1.636 -0.215 H16 A1D3P 30 A1D3P H4 H16 H 0 1 N N N N N N -47.552 -27.875 6.914 4.265 1.503 0.237 H4 A1D3P 31 A1D3P H6 H17 H 0 1 N N N N N N -44.943 -29.491 2.421 -1.262 -1.859 -0.119 H6 A1D3P 32 A1D3P H10 H18 H 0 1 N N N N N N -44.703 -33.999 3.269 -2.648 0.267 -3.091 H10 A1D3P 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3P C8 C7 SING N N 1 A1D3P C7 C9 SING N N 2 A1D3P C7 C5 SING N N 3 A1D3P C6 C5 SING N N 4 A1D3P C6 O1 SING N N 5 A1D3P C5 N2 SING N N 6 A1D3P N2 C4 SING N N 7 A1D3P C4 C3 DOUB Y N 8 A1D3P C4 N3 SING Y N 9 A1D3P C3 C2 SING Y N 10 A1D3P N3 C10 DOUB Y N 11 A1D3P C1 N1 SING N N 12 A1D3P C2 N1 SING N N 13 A1D3P C2 N4 DOUB Y N 14 A1D3P C10 N4 SING Y N 15 A1D3P C1 H1 SING N N 16 A1D3P C1 H3 SING N N 17 A1D3P C1 H2 SING N N 18 A1D3P C10 H18 SING N N 19 A1D3P C3 H5 SING N N 20 A1D3P C5 H7 SING N N 21 A1D3P C6 H9 SING N N 22 A1D3P C6 H8 SING N N 23 A1D3P C7 H11 SING N N 24 A1D3P C8 H14 SING N N 25 A1D3P C8 H12 SING N N 26 A1D3P C8 H13 SING N N 27 A1D3P C9 H17 SING N N 28 A1D3P C9 H15 SING N N 29 A1D3P C9 H16 SING N N 30 A1D3P N1 H4 SING N N 31 A1D3P N2 H6 SING N N 32 A1D3P O1 H10 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3P SMILES ACDLabs 14.52 "CNc1cc(NC(CO)C(C)C)ncn1" A1D3P InChI InChI 1.06 "InChI=1S/C10H18N4O/c1-7(2)8(5-15)14-10-4-9(11-3)12-6-13-10/h4,6-8,15H,5H2,1-3H3,(H2,11,12,13,14)/t8-/m0/s1" A1D3P InChIKey InChI 1.06 UWNGOBUTBJYKCO-QMMMGPOBSA-N A1D3P SMILES_CANONICAL CACTVS 3.385 "CNc1cc(N[C@@H](CO)C(C)C)ncn1" A1D3P SMILES CACTVS 3.385 "CNc1cc(N[CH](CO)C(C)C)ncn1" A1D3P SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@H](CO)Nc1cc(ncn1)NC" A1D3P SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(CO)Nc1cc(ncn1)NC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3P "SYSTEMATIC NAME" ACDLabs 14.52 "(2R)-3-methyl-2-{[6-(methylamino)pyrimidin-4-yl]amino}butan-1-ol" A1D3P "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-3-methyl-2-[[6-(methylamino)pyrimidin-4-yl]amino]butan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3P "Create component" 2026-09-01 RCSB A1D3P "Initial release" 2026-11-04 RCSB #