data_A1D3R # _chem_comp.id A1D3R _chem_comp.name "(8R)-5-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-8-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15NB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3R C13 C1 C 0 1 N N N N N N -42.644 -29.333 2.740 1.883 -1.859 -0.347 C13 A1D3R 1 A1D3R C11 C2 C 0 1 N N N N N N -43.128 -31.394 2.783 1.123 -0.372 -1.658 C11 A1D3R 2 A1D3R C12 C3 C 0 1 N N N N N N -41.839 -30.611 2.502 0.760 -1.845 -1.399 C12 A1D3R 3 A1D3R C1 C4 C 0 1 N N R N N N -44.360 -30.119 0.850 2.975 0.466 -0.057 C1 A1D3R 4 A1D3R C10 C5 C 0 1 N N N N N N -43.909 -30.135 2.323 1.681 -0.345 -0.230 C10 A1D3R 5 A1D3R C2 C6 C 0 1 N N N N N N -45.849 -30.489 0.842 2.899 0.925 1.424 C2 A1D3R 6 A1D3R C3 C7 C 0 1 N N N N N N -46.244 -30.538 2.313 1.377 1.154 1.605 C3 A1D3R 7 A1D3R C4 C8 C 0 1 Y N N N N N -45.267 -29.672 4.410 -0.448 0.529 0.245 C4 A1D3R 8 A1D3R C5 C9 C 0 1 Y N N N N N -44.191 -29.659 6.473 -1.611 2.068 -1.021 C5 A1D3R 9 A1D3R C6 C10 C 0 1 Y N N N N N -46.377 -29.180 6.474 -2.818 0.300 -0.177 C6 A1D3R 10 A1D3R C7 C11 C 0 1 Y N N N N N -48.532 -28.771 5.886 -3.334 -1.592 0.913 C7 A1D3R 11 A1D3R C8 C12 C 0 1 Y N N N N N -47.860 -29.059 4.720 -2.018 -1.417 1.117 C8 A1D3R 12 A1D3R C9 C13 C 0 1 Y N N N N N -46.485 -29.325 5.068 -1.641 -0.189 0.419 C9 A1D3R 13 A1D3R N1 N1 N 0 1 N N N N N N -45.177 -29.849 3.018 0.735 0.086 0.807 N1 A1D3R 14 A1D3R N2 N2 N 0 1 Y N N N N N -44.135 -29.839 5.154 -0.484 1.644 -0.479 N2 A1D3R 15 A1D3R N3 N3 N 0 1 Y N N N N N -45.248 -29.339 7.217 -2.751 1.428 -0.884 N3 A1D3R 16 A1D3R N4 N4 N 0 1 Y N N N N N -47.632 -28.850 6.937 -3.823 -0.571 0.140 N4 A1D3R 17 A1D3R O1 O1 O 0 1 N N N N N N -44.179 -28.853 0.250 4.122 -0.358 -0.277 O1 A1D3R 18 A1D3R H16 H1 H 0 1 N N N N N N -42.388 -28.498 2.071 1.625 -2.405 0.561 H16 A1D3R 19 A1D3R H15 H2 H 0 1 N N N N N N -42.647 -28.980 3.782 2.856 -2.140 -0.749 H15 A1D3R 20 A1D3R H11 H3 H 0 1 N N N N N N -43.278 -31.668 3.838 1.885 -0.238 -2.426 H11 A1D3R 21 A1D3R H12 H4 H 0 1 N N N N N N -43.273 -32.281 2.150 0.257 0.273 -1.804 H12 A1D3R 22 A1D3R H13 H5 H 0 1 N N N N N N -41.447 -30.723 1.480 0.952 -2.498 -2.250 H13 A1D3R 23 A1D3R H14 H6 H 0 1 N N N N N N -41.029 -30.785 3.226 -0.236 -1.981 -0.977 H14 A1D3R 24 A1D3R H2 H7 H 0 1 N N N N N N -43.800 -30.890 0.300 2.985 1.326 -0.728 H2 A1D3R 25 A1D3R H3 H8 H 0 1 N N N N N N -46.435 -29.726 0.308 3.258 0.143 2.094 H3 A1D3R 26 A1D3R H4 H9 H 0 1 N N N N N N -46.003 -31.469 0.366 3.454 1.851 1.575 H4 A1D3R 27 A1D3R H6 H10 H 0 1 N N N N N N -47.204 -30.026 2.472 1.101 1.061 2.655 H6 A1D3R 28 A1D3R H5 H11 H 0 1 N N N N N N -46.323 -31.580 2.657 1.093 2.135 1.223 H5 A1D3R 29 A1D3R H7 H12 H 0 1 N N N N N N -43.261 -29.789 7.006 -1.595 2.979 -1.602 H7 A1D3R 30 A1D3R H9 H13 H 0 1 N N N N N N -49.581 -28.526 5.968 -3.918 -2.414 1.299 H9 A1D3R 31 A1D3R H10 H14 H 0 1 N N N N N N -48.284 -29.082 3.727 -1.364 -2.061 1.687 H10 A1D3R 32 A1D3R H8 H15 H 0 1 N N N N N N -47.861 -28.690 7.897 -4.747 -0.479 -0.140 H8 A1D3R 33 A1D3R H1 H16 H 0 1 N N N N N N -43.256 -28.628 0.257 4.965 0.107 -0.180 H1 A1D3R 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3R O1 C1 SING N N 1 A1D3R C2 C1 SING N N 2 A1D3R C2 C3 SING N N 3 A1D3R C1 C10 SING N N 4 A1D3R C3 N1 SING N N 5 A1D3R C10 C13 SING N N 6 A1D3R C10 C11 SING N N 7 A1D3R C10 N1 SING N N 8 A1D3R C12 C13 SING N N 9 A1D3R C12 C11 SING N N 10 A1D3R N1 C4 SING N N 11 A1D3R C4 C9 DOUB Y N 12 A1D3R C4 N2 SING Y N 13 A1D3R C8 C9 SING Y N 14 A1D3R C8 C7 DOUB Y N 15 A1D3R C9 C6 SING Y N 16 A1D3R N2 C5 DOUB Y N 17 A1D3R C7 N4 SING Y N 18 A1D3R C5 N3 SING Y N 19 A1D3R C6 N4 SING Y N 20 A1D3R C6 N3 DOUB Y N 21 A1D3R C13 H16 SING N N 22 A1D3R C13 H15 SING N N 23 A1D3R C11 H11 SING N N 24 A1D3R C11 H12 SING N N 25 A1D3R C12 H13 SING N N 26 A1D3R C12 H14 SING N N 27 A1D3R C1 H2 SING N N 28 A1D3R C2 H3 SING N N 29 A1D3R C2 H4 SING N N 30 A1D3R C3 H6 SING N N 31 A1D3R C3 H5 SING N N 32 A1D3R C5 H7 SING N N 33 A1D3R C7 H9 SING N N 34 A1D3R C8 H10 SING N N 35 A1D3R N4 H8 SING N N 36 A1D3R O1 H1 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3R SMILES ACDLabs 14.52 "OC1CCN(c2ncnc3[NH]ccc23)C21CCC2" A1D3R InChI InChI 1.06 "InChI=1S/C13H16N4O/c18-10-3-7-17(13(10)4-1-5-13)12-9-2-6-14-11(9)15-8-16-12/h2,6,8,10,18H,1,3-5,7H2,(H,14,15,16)/t10-/m1/s1" A1D3R InChIKey InChI 1.06 SWOHKMRHAFKYKA-SNVBAGLBSA-N A1D3R SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CCN(c2ncnc3[nH]ccc23)C14CCC4" A1D3R SMILES CACTVS 3.385 "O[CH]1CCN(c2ncnc3[nH]ccc23)C14CCC4" A1D3R SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@H](C34CCC4)O" A1D3R SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC(C34CCC4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3R "SYSTEMATIC NAME" ACDLabs 14.52 "(8R)-5-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-8-ol" A1D3R "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(8~{R})-5-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-5-azaspiro[3.4]octan-8-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3R "Create component" 2026-09-01 RCSB A1D3R "Initial release" 2026-11-04 RCSB #