data_A1D3S # _chem_comp.id A1D3S _chem_comp.name "(1R,4S)-4-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]cyclopent-2-ene-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H12 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 272.259 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15MZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3S C13 C1 C 0 1 Y N N N N N -46.845 -29.014 4.880 -3.164 0.248 0.013 C13 A1D3S 1 A1D3S C11 C2 C 0 1 Y N N N N N -48.857 -28.623 5.833 -5.036 1.500 -0.009 C11 A1D3S 2 A1D3S C12 C3 C 0 1 Y N N N N N -48.244 -28.786 4.615 -3.700 1.600 0.108 C12 A1D3S 3 A1D3S C1 C4 C 0 1 N N N N N N -45.669 -29.340 2.631 -0.680 0.522 0.245 C1 A1D3S 4 A1D3S C10 C5 C 0 1 Y N N N N N -46.665 -28.966 6.289 -4.279 -0.606 -0.162 C10 A1D3S 5 A1D3S C2 C6 C 0 1 N N S N N N -44.359 -30.115 0.663 1.731 0.790 0.471 C2 A1D3S 6 A1D3S C3 C7 C 0 1 N N N N N N -45.365 -31.105 0.145 2.246 1.268 -0.867 C3 A1D3S 7 A1D3S C4 C8 C 0 1 N N N N N N -44.841 -32.324 0.037 3.543 1.146 -0.942 C4 A1D3S 8 A1D3S C5 C9 C 0 1 N N R N N N -43.422 -32.354 0.545 4.110 0.565 0.333 C5 A1D3S 9 A1D3S C6 C10 C 0 1 N N N N N N -43.306 -32.800 2.007 5.122 -0.506 0.017 C6 A1D3S 10 A1D3S C7 C11 C 0 1 N N N N N N -43.029 -30.862 0.415 2.890 -0.044 1.066 C7 A1D3S 11 A1D3S C8 C12 C 0 1 Y N N N N N -45.658 -29.252 4.132 -1.883 -0.323 0.063 C8 A1D3S 12 A1D3S C9 C13 C 0 1 Y N N N N N -44.471 -29.347 6.131 -2.845 -2.401 -0.220 C9 A1D3S 13 A1D3S N1 N1 N 0 1 N N N N N N -44.579 -29.894 2.082 0.541 -0.046 0.290 N1 A1D3S 14 A1D3S N2 N2 N 0 1 Y N N N N N -44.485 -29.420 4.798 -1.778 -1.645 -0.058 N2 A1D3S 15 A1D3S N3 N3 N 0 1 Y N N N N N -45.493 -29.129 6.961 -4.066 -1.909 -0.277 N3 A1D3S 16 A1D3S N4 N4 N 0 1 Y N N N N N -47.908 -28.721 6.832 -5.394 0.189 -0.171 N4 A1D3S 17 A1D3S O1 O1 O 0 1 N N N N N N -46.621 -28.926 1.970 -0.795 1.727 0.354 O1 A1D3S 18 A1D3S O2 O2 O 0 1 N N N N N N -42.856 -31.978 2.836 6.230 -0.198 -0.676 O2 A1D3S 19 A1D3S O3 O3 O 0 1 N N N N N N -43.675 -33.964 2.268 4.937 -1.640 0.388 O3 A1D3S 20 A1D3S H10 H1 H 0 1 N N N N N N -49.912 -28.447 5.985 -5.725 2.331 0.021 H10 A1D3S 21 A1D3S H11 H2 H 0 1 N N N N N N -48.718 -28.750 3.645 -3.132 2.509 0.245 H11 A1D3S 22 A1D3S H2 H3 H 0 1 N N N N N N -44.390 -29.177 0.089 1.504 1.638 1.116 H2 A1D3S 23 A1D3S H3 H4 H 0 1 N N N N N N -46.385 -30.858 -0.108 1.622 1.660 -1.657 H3 A1D3S 24 A1D3S H4 H5 H 0 1 N N N N N N -45.364 -33.180 -0.363 4.134 1.423 -1.803 H4 A1D3S 25 A1D3S H5 H6 H 0 1 N N N N N N -42.785 -32.976 -0.101 4.564 1.350 0.938 H5 A1D3S 26 A1D3S H7 H7 H 0 1 N N N N N N -42.277 -30.586 1.169 2.968 0.102 2.143 H7 A1D3S 27 A1D3S H6 H8 H 0 1 N N N N N N -42.638 -30.645 -0.590 2.775 -1.100 0.823 H6 A1D3S 28 A1D3S H8 H9 H 0 1 N N N N N N -43.507 -29.482 6.599 -2.713 -3.468 -0.318 H8 A1D3S 29 A1D3S H1 H10 H 0 1 N N N N N N -43.852 -30.181 2.705 0.633 -1.008 0.204 H1 A1D3S 30 A1D3S H9 H11 H 0 1 N N N N N N -48.096 -28.628 7.810 -6.304 -0.130 -0.275 H9 A1D3S 31 A1D3S H12 H12 H 0 1 N N N N N N -42.837 -32.375 3.699 6.850 -0.919 -0.854 H12 A1D3S 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3S C4 C3 DOUB N N 1 A1D3S C4 C5 SING N N 2 A1D3S C3 C2 SING N N 3 A1D3S C7 C5 SING N N 4 A1D3S C7 C2 SING N N 5 A1D3S C5 C6 SING N N 6 A1D3S C2 N1 SING N N 7 A1D3S O1 C1 DOUB N N 8 A1D3S C6 O3 DOUB N N 9 A1D3S C6 O2 SING N N 10 A1D3S N1 C1 SING N N 11 A1D3S C1 C8 SING N N 12 A1D3S C8 N2 DOUB Y N 13 A1D3S C8 C13 SING Y N 14 A1D3S C12 C13 SING Y N 15 A1D3S C12 C11 DOUB Y N 16 A1D3S N2 C9 SING Y N 17 A1D3S C13 C10 DOUB Y N 18 A1D3S C11 N4 SING Y N 19 A1D3S C9 N3 DOUB Y N 20 A1D3S C10 N4 SING Y N 21 A1D3S C10 N3 SING Y N 22 A1D3S C11 H10 SING N N 23 A1D3S C12 H11 SING N N 24 A1D3S C2 H2 SING N N 25 A1D3S C3 H3 SING N N 26 A1D3S C4 H4 SING N N 27 A1D3S C5 H5 SING N N 28 A1D3S C7 H7 SING N N 29 A1D3S C7 H6 SING N N 30 A1D3S C9 H8 SING N N 31 A1D3S N1 H1 SING N N 32 A1D3S N4 H9 SING N N 33 A1D3S O2 H12 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3S SMILES ACDLabs 14.52 "O=C(O)C1C=CC(C1)NC(=O)c1ncnc2[NH]ccc12" A1D3S InChI InChI 1.06 "InChI=1S/C13H12N4O3/c18-12(17-8-2-1-7(5-8)13(19)20)10-9-3-4-14-11(9)16-6-15-10/h1-4,6-8H,5H2,(H,17,18)(H,19,20)(H,14,15,16)/t7-,8+/m0/s1" A1D3S InChIKey InChI 1.06 YJBCDVZSXILDCL-JGVFFNPUSA-N A1D3S SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@H]1C[C@H](NC(=O)c2ncnc3[nH]ccc23)C=C1" A1D3S SMILES CACTVS 3.385 "OC(=O)[CH]1C[CH](NC(=O)c2ncnc3[nH]ccc23)C=C1" A1D3S SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N[C@H]3C[C@H](C=C3)C(=O)O" A1D3S SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC3CC(C=C3)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3S "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,4S)-4-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]cyclopent-2-ene-1-carboxylic acid" A1D3S "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},4~{S})-4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylcarbonylamino)cyclopent-2-ene-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3S "Create component" 2026-09-01 RCSB A1D3S "Initial release" 2026-11-04 RCSB #