data_A1D3U # _chem_comp.id A1D3U _chem_comp.name "(3R)-3-(oxan-4-yl)-3-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.328 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15PB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3U C13 C1 C 0 1 N N N N N N -44.863 -26.168 -0.918 -5.236 -0.804 -0.154 C13 A1D3U 1 A1D3U C15 C2 C 0 1 N N N N N N -42.974 -27.558 0.739 -2.576 -1.831 0.291 C15 A1D3U 2 A1D3U C11 C3 C 0 1 N N N N N N -44.095 -28.361 0.073 -2.785 -0.349 -0.039 C11 A1D3U 3 A1D3U C12 C4 C 0 1 N N N N N N -45.291 -27.415 -0.123 -4.043 -0.201 -0.900 C12 A1D3U 4 A1D3U C1 C5 C 0 1 N N N N N N -43.663 -31.775 1.954 -1.866 2.450 0.142 C1 A1D3U 5 A1D3U C10 C6 C 0 1 Y N N N N N -47.233 -28.994 4.996 3.327 -0.294 -0.346 C10 A1D3U 6 A1D3U C14 C7 C 0 1 N N N N N N -42.642 -26.325 -0.105 -3.826 -2.370 0.991 C14 A1D3U 7 A1D3U C2 C8 C 0 1 N N N N N N -43.413 -30.752 0.833 -1.783 1.659 -1.137 C2 A1D3U 8 A1D3U C3 C9 C 0 1 N N R N N N -44.475 -29.616 0.868 -1.573 0.179 -0.809 C3 A1D3U 9 A1D3U C4 C10 C 0 1 N N N N N N -46.010 -29.202 2.774 0.835 -0.113 -0.578 C4 A1D3U 10 A1D3U C5 C11 C 0 1 Y N N N N N -46.034 -29.104 4.257 2.064 -0.148 0.248 C5 A1D3U 11 A1D3U C6 C12 C 0 1 Y N N N N N -44.846 -29.198 6.236 3.091 -0.075 2.312 C6 A1D3U 12 A1D3U C7 C13 C 0 1 Y N N N N N -47.069 -28.981 6.400 4.469 -0.322 0.490 C7 A1D3U 13 A1D3U C8 C14 C 0 1 Y N N N N N -49.255 -28.787 5.954 5.159 -0.545 -1.633 C8 A1D3U 14 A1D3U C9 C15 C 0 1 Y N N N N N -48.637 -28.881 4.728 3.820 -0.441 -1.710 C9 A1D3U 15 A1D3U N1 N1 N 0 1 N N N N N N -44.776 -29.340 2.265 -0.369 0.027 0.012 N1 A1D3U 16 A1D3U N2 N2 N 0 1 Y N N N N N -44.859 -29.213 4.908 2.000 -0.044 1.574 N2 A1D3U 17 A1D3U N3 N3 N 0 1 Y N N N N N -45.890 -29.089 7.063 4.298 -0.210 1.800 N3 A1D3U 18 A1D3U N4 N4 N 0 1 Y N N N N N -48.314 -28.851 6.966 5.559 -0.471 -0.326 N4 A1D3U 19 A1D3U O1 O1 O 0 1 N N N N N N -44.521 -32.679 1.787 -1.656 1.910 1.202 O1 A1D3U 20 A1D3U O2 O2 O 0 1 N N N N N N -47.043 -29.202 2.105 0.913 -0.209 -1.786 O2 A1D3U 21 A1D3U O3 O3 O 0 1 N N N N N N -43.788 -25.495 -0.271 -4.964 -2.174 0.149 O3 A1D3U 22 A1D3U O4 O4 O 0 1 N N N N N N -42.974 -31.621 2.985 -2.175 3.756 0.105 O4 A1D3U 23 A1D3U H13 H1 H 0 1 N N N N N N -45.719 -25.482 -1.000 -5.402 -0.253 0.772 H13 A1D3U 24 A1D3U H12 H2 H 0 1 N N N N N N -44.542 -26.476 -1.924 -6.126 -0.740 -0.779 H12 A1D3U 25 A1D3U H16 H3 H 0 1 N N N N N N -42.078 -28.189 0.830 -2.405 -2.388 -0.630 H16 A1D3U 26 A1D3U H17 H4 H 0 1 N N N N N N -43.300 -27.238 1.740 -1.713 -1.939 0.948 H17 A1D3U 27 A1D3U H9 H5 H 0 1 N N N N N N -43.745 -28.679 -0.920 -2.905 0.217 0.885 H9 A1D3U 28 A1D3U H10 H6 H 0 1 N N N N N N -45.673 -27.104 0.861 -3.901 -0.726 -1.845 H10 A1D3U 29 A1D3U H11 H7 H 0 1 N N N N N N -46.084 -27.942 -0.674 -4.230 0.855 -1.093 H11 A1D3U 30 A1D3U H14 H8 H 0 1 N N N N N N -42.288 -26.651 -1.094 -3.700 -3.435 1.190 H14 A1D3U 31 A1D3U H15 H9 H 0 1 N N N N N N -41.850 -25.749 0.396 -3.973 -1.840 1.932 H15 A1D3U 32 A1D3U H2 H10 H 0 1 N N N N N N -43.466 -31.264 -0.139 -2.709 1.778 -1.700 H2 A1D3U 33 A1D3U H1 H11 H 0 1 N N N N N N -42.413 -30.313 0.963 -0.946 2.021 -1.734 H1 A1D3U 34 A1D3U H3 H12 H 0 1 N N N N N N -45.385 -30.023 0.403 -1.456 -0.385 -1.734 H3 A1D3U 35 A1D3U H5 H13 H 0 1 N N N N N N -43.876 -29.284 6.703 2.993 0.013 3.384 H5 A1D3U 36 A1D3U H7 H14 H 0 1 N N N N N N -50.319 -28.679 6.104 5.821 -0.664 -2.477 H7 A1D3U 37 A1D3U H8 H15 H 0 1 N N N N N N -49.114 -28.872 3.759 3.224 -0.463 -2.611 H8 A1D3U 38 A1D3U H4 H16 H 0 1 N N N N N N -44.004 -29.246 2.894 -0.438 0.027 0.979 H4 A1D3U 39 A1D3U H6 H17 H 0 1 N N N N N N -48.508 -28.810 7.946 6.479 -0.521 -0.022 H6 A1D3U 40 A1D3U H18 H18 H 0 1 N N N N N N -43.199 -32.291 3.620 -2.217 4.222 0.951 H18 A1D3U 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3U C13 O3 SING N N 1 A1D3U C13 C12 SING N N 2 A1D3U O3 C14 SING N N 3 A1D3U C12 C11 SING N N 4 A1D3U C14 C15 SING N N 5 A1D3U C11 C15 SING N N 6 A1D3U C11 C3 SING N N 7 A1D3U C2 C3 SING N N 8 A1D3U C2 C1 SING N N 9 A1D3U C3 N1 SING N N 10 A1D3U O1 C1 DOUB N N 11 A1D3U C1 O4 SING N N 12 A1D3U O2 C4 DOUB N N 13 A1D3U N1 C4 SING N N 14 A1D3U C4 C5 SING N N 15 A1D3U C5 N2 DOUB Y N 16 A1D3U C5 C10 SING Y N 17 A1D3U C9 C10 SING Y N 18 A1D3U C9 C8 DOUB Y N 19 A1D3U N2 C6 SING Y N 20 A1D3U C10 C7 DOUB Y N 21 A1D3U C8 N4 SING Y N 22 A1D3U C6 N3 DOUB Y N 23 A1D3U C7 N4 SING Y N 24 A1D3U C7 N3 SING Y N 25 A1D3U C13 H13 SING N N 26 A1D3U C13 H12 SING N N 27 A1D3U C15 H16 SING N N 28 A1D3U C15 H17 SING N N 29 A1D3U C11 H9 SING N N 30 A1D3U C12 H10 SING N N 31 A1D3U C12 H11 SING N N 32 A1D3U C14 H14 SING N N 33 A1D3U C14 H15 SING N N 34 A1D3U C2 H2 SING N N 35 A1D3U C2 H1 SING N N 36 A1D3U C3 H3 SING N N 37 A1D3U C6 H5 SING N N 38 A1D3U C8 H7 SING N N 39 A1D3U C9 H8 SING N N 40 A1D3U N1 H4 SING N N 41 A1D3U N4 H6 SING N N 42 A1D3U O4 H18 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3U SMILES ACDLabs 14.52 "O=C(O)CC(NC(=O)c1ncnc2[NH]ccc21)C1CCOCC1" A1D3U InChI InChI 1.06 "InChI=1S/C15H18N4O4/c20-12(21)7-11(9-2-5-23-6-3-9)19-15(22)13-10-1-4-16-14(10)18-8-17-13/h1,4,8-9,11H,2-3,5-7H2,(H,19,22)(H,20,21)(H,16,17,18)/t11-/m1/s1" A1D3U InChIKey InChI 1.06 MOQUTIQAGSKKBF-LLVKDONJSA-N A1D3U SMILES_CANONICAL CACTVS 3.385 "OC(=O)C[C@@H](NC(=O)c1ncnc2[nH]ccc12)C3CCOCC3" A1D3U SMILES CACTVS 3.385 "OC(=O)C[CH](NC(=O)c1ncnc2[nH]ccc12)C3CCOCC3" A1D3U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N[C@H](CC(=O)O)C3CCOCC3" A1D3U SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC(CC(=O)O)C3CCOCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3U "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-3-(oxan-4-yl)-3-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]propanoic acid" A1D3U "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-(oxan-4-yl)-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylcarbonylamino)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3U "Create component" 2026-09-01 RCSB A1D3U "Initial release" 2026-11-04 RCSB #