data_A1D3V # _chem_comp.id A1D3V _chem_comp.name "(2R)-2-{[6-(cyclopropylamino)pyrimidin-4-yl]amino}-3-methylbutan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 236.313 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15PC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3V C11 C1 C 0 1 N N N N N N -49.814 -30.622 6.201 3.877 -2.433 -0.825 C11 A1D3V 1 A1D3V C12 C2 C 0 1 Y N N N N N -44.213 -29.907 6.514 1.378 3.026 0.039 C12 A1D3V 2 A1D3V C1 C3 C 0 1 N N N N N N -41.942 -31.038 0.648 -3.384 0.080 -2.007 C1 A1D3V 3 A1D3V C10 C4 C 0 1 N N N N N N -50.237 -29.341 6.883 3.669 -2.444 0.691 C10 A1D3V 4 A1D3V C2 C5 C 0 1 N N N N N N -43.232 -30.399 1.199 -3.340 -0.558 -0.617 C2 A1D3V 5 A1D3V C3 C6 C 0 1 N N N N N N -43.003 -28.884 1.378 -3.697 -2.041 -0.725 C3 A1D3V 6 A1D3V C4 C7 C 0 1 N N R N N N -43.713 -31.088 2.507 -1.933 -0.413 -0.034 C4 A1D3V 7 A1D3V C5 C8 C 0 1 N N N N N N -44.033 -32.585 2.314 -1.905 -0.996 1.381 C5 A1D3V 8 A1D3V C6 C9 C 0 1 Y N N N N N -45.071 -30.167 4.402 -0.232 1.377 -0.001 C6 A1D3V 9 A1D3V C7 C10 C 0 1 Y N N N N N -46.363 -29.900 4.899 0.769 0.413 -0.064 C7 A1D3V 10 A1D3V C8 C11 C 0 1 Y N N N N N -46.471 -29.633 6.282 2.094 0.839 -0.077 C8 A1D3V 11 A1D3V C9 C12 C 0 1 N N N N N N -48.923 -29.403 6.144 2.830 -1.516 -0.189 C9 A1D3V 12 A1D3V N1 N1 N 0 1 N N N N N N -44.916 -30.445 3.036 -1.567 1.004 0.015 N1 A1D3V 13 A1D3V N2 N2 N 0 1 N N N N N N -47.686 -29.348 6.908 3.128 -0.083 -0.138 N2 A1D3V 14 A1D3V N3 N3 N 0 1 Y N N N N N -45.389 -29.640 7.082 2.354 2.143 -0.019 N3 A1D3V 15 A1D3V N4 N4 N 0 1 Y N N N N N -43.994 -30.170 5.225 0.111 2.663 0.048 N4 A1D3V 16 A1D3V O1 O1 O 0 1 N N N N N N -44.501 -33.145 3.522 -2.918 -0.373 2.173 O1 A1D3V 17 A1D3V H18 H1 H 0 1 N N N N N N -50.339 -30.963 5.296 4.787 -1.970 -1.205 H18 A1D3V 18 A1D3V H19 H2 H 0 1 N N N N N N -49.516 -31.493 6.803 3.517 -3.294 -1.388 H19 A1D3V 19 A1D3V H20 H3 H 0 1 N N N N N N -43.350 -29.911 7.163 1.622 4.076 0.085 H20 A1D3V 20 A1D3V H2 H4 H 0 1 N N N N N N -42.095 -32.119 0.517 -4.386 -0.023 -2.422 H2 A1D3V 21 A1D3V H3 H5 H 0 1 N N N N N N -41.693 -30.583 -0.322 -3.129 1.137 -1.930 H3 A1D3V 22 A1D3V H1 H6 H 0 1 N N N N N N -41.117 -30.868 1.356 -2.667 -0.419 -2.659 H1 A1D3V 23 A1D3V H16 H7 H 0 1 N N N N N N -50.248 -29.280 7.981 3.172 -3.312 1.125 H16 A1D3V 24 A1D3V H17 H8 H 0 1 N N N N N N -51.070 -28.750 6.475 4.444 -1.989 1.308 H17 A1D3V 25 A1D3V H4 H9 H 0 1 N N N N N N -44.021 -30.532 0.444 -4.056 -0.058 0.035 H4 A1D3V 26 A1D3V H7 H10 H 0 1 N N N N N N -43.919 -28.418 1.771 -3.764 -2.473 0.273 H7 A1D3V 27 A1D3V H5 H11 H 0 1 N N N N N N -42.176 -28.719 2.084 -4.656 -2.148 -1.232 H5 A1D3V 28 A1D3V H6 H12 H 0 1 N N N N N N -42.751 -28.434 0.406 -2.926 -2.560 -1.294 H6 A1D3V 29 A1D3V H8 H13 H 0 1 N N N N N N -42.905 -31.005 3.249 -1.222 -0.951 -0.662 H8 A1D3V 30 A1D3V H10 H14 H 0 1 N N N N N N -44.807 -32.694 1.540 -2.088 -2.070 1.335 H10 A1D3V 31 A1D3V H9 H15 H 0 1 N N N N N N -43.121 -33.113 1.998 -0.929 -0.813 1.830 H9 A1D3V 32 A1D3V H13 H16 H 0 1 N N N N N N -47.229 -29.900 4.253 0.524 -0.638 -0.104 H13 A1D3V 33 A1D3V H15 H17 H 0 1 N N N N N N -48.912 -28.883 5.175 1.781 -1.773 -0.335 H15 A1D3V 34 A1D3V H12 H18 H 0 1 N N N N N N -44.997 -29.569 2.561 -2.260 1.683 0.058 H12 A1D3V 35 A1D3V H14 H19 H 0 1 N N N N N N -47.613 -28.420 7.274 4.049 0.222 -0.147 H14 A1D3V 36 A1D3V H11 H20 H 0 1 N N N N N N -44.694 -34.066 3.391 -2.958 -0.695 3.084 H11 A1D3V 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3V C1 C2 SING N N 1 A1D3V C2 C3 SING N N 2 A1D3V C2 C4 SING N N 3 A1D3V C5 C4 SING N N 4 A1D3V C5 O1 SING N N 5 A1D3V C4 N1 SING N N 6 A1D3V N1 C6 SING N N 7 A1D3V C6 C7 DOUB Y N 8 A1D3V C6 N4 SING Y N 9 A1D3V C7 C8 SING Y N 10 A1D3V N4 C12 DOUB Y N 11 A1D3V C9 C11 SING N N 12 A1D3V C9 C10 SING N N 13 A1D3V C9 N2 SING N N 14 A1D3V C11 C10 SING N N 15 A1D3V C8 N2 SING N N 16 A1D3V C8 N3 DOUB Y N 17 A1D3V C12 N3 SING Y N 18 A1D3V C11 H18 SING N N 19 A1D3V C11 H19 SING N N 20 A1D3V C12 H20 SING N N 21 A1D3V C1 H2 SING N N 22 A1D3V C1 H3 SING N N 23 A1D3V C1 H1 SING N N 24 A1D3V C10 H16 SING N N 25 A1D3V C10 H17 SING N N 26 A1D3V C2 H4 SING N N 27 A1D3V C3 H7 SING N N 28 A1D3V C3 H5 SING N N 29 A1D3V C3 H6 SING N N 30 A1D3V C4 H8 SING N N 31 A1D3V C5 H10 SING N N 32 A1D3V C5 H9 SING N N 33 A1D3V C7 H13 SING N N 34 A1D3V C9 H15 SING N N 35 A1D3V N1 H12 SING N N 36 A1D3V N2 H14 SING N N 37 A1D3V O1 H11 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3V SMILES ACDLabs 14.52 "CC(C)C(CO)Nc1cc(NC2CC2)ncn1" A1D3V InChI InChI 1.06 "InChI=1S/C12H20N4O/c1-8(2)10(6-17)16-12-5-11(13-7-14-12)15-9-3-4-9/h5,7-10,17H,3-4,6H2,1-2H3,(H2,13,14,15,16)/t10-/m0/s1" A1D3V InChIKey InChI 1.06 KTMKAZPRPVVGBM-JTQLQIEISA-N A1D3V SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](CO)Nc1cc(NC2CC2)ncn1" A1D3V SMILES CACTVS 3.385 "CC(C)[CH](CO)Nc1cc(NC2CC2)ncn1" A1D3V SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@H](CO)Nc1cc(ncn1)NC2CC2" A1D3V SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(CO)Nc1cc(ncn1)NC2CC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3V "SYSTEMATIC NAME" ACDLabs 14.52 "(2R)-2-{[6-(cyclopropylamino)pyrimidin-4-yl]amino}-3-methylbutan-1-ol" A1D3V "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-2-[[6-(cyclopropylamino)pyrimidin-4-yl]amino]-3-methyl-butan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3V "Create component" 2026-09-01 RCSB A1D3V "Initial release" 2026-11-04 RCSB #