data_A1D3X # _chem_comp.id A1D3X _chem_comp.name "N-{2-[(3R)-5,5-dimethyl-2-oxopyrrolidin-3-yl]ethyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H19 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.344 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15GX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3X C13 C1 C 0 1 Y N N N N N -47.900 -28.747 4.147 4.374 1.645 -0.054 C13 A1D3X 1 A1D3X C15 C2 C 0 1 N N N N N N -43.634 -32.099 1.980 -3.819 1.201 -0.339 C15 A1D3X 2 A1D3X C11 C3 C 0 1 Y N N N N N -46.532 -29.053 5.980 5.056 -0.543 -0.216 C11 A1D3X 3 A1D3X C12 C4 C 0 1 Y N N N N N -48.657 -28.714 5.288 5.707 1.604 -0.231 C12 A1D3X 4 A1D3X C1 C5 C 0 1 N N N N N N -47.004 -32.199 0.979 -4.659 -1.887 -0.897 C1 A1D3X 5 A1D3X C10 C6 C 0 1 Y N N N N N -44.321 -29.365 6.072 3.715 -2.406 -0.101 C10 A1D3X 6 A1D3X C14 C7 C 0 1 Y N N N N N -46.541 -28.968 4.562 3.906 0.264 -0.038 C14 A1D3X 7 A1D3X C2 C8 C 0 1 N N N N N N -45.560 -32.685 0.794 -5.238 -0.635 -0.236 C2 A1D3X 8 A1D3X C3 C9 C 0 1 N N N N N N -45.519 -34.120 0.242 -6.765 -0.722 -0.185 C3 A1D3X 9 A1D3X C4 C10 C 0 1 N N N N N N -44.738 -31.715 -0.087 -4.668 -0.462 1.191 C4 A1D3X 10 A1D3X C5 C11 C 0 1 N N R N N N -43.331 -31.701 0.540 -3.460 0.469 0.936 C5 A1D3X 11 A1D3X C6 C12 C 0 1 N N N N N N -42.514 -30.396 0.396 -2.184 -0.352 0.742 C6 A1D3X 12 A1D3X C7 C13 C 0 1 N N N N N N -43.291 -29.106 0.718 -0.985 0.592 0.615 C7 A1D3X 13 A1D3X C8 C14 C 0 1 N N N N N N -45.052 -29.040 2.469 1.424 0.429 0.293 C8 A1D3X 14 A1D3X C9 C15 C 0 1 Y N N N N N -45.264 -29.105 3.954 2.660 -0.365 0.105 C9 A1D3X 15 A1D3X N1 N1 N 0 1 N N N N N N -43.762 -29.123 2.092 0.237 -0.194 0.429 N1 A1D3X 16 A1D3X N2 N2 N 0 1 Y N N N N N -44.178 -29.302 4.746 2.619 -1.696 0.067 N2 A1D3X 17 A1D3X N3 N3 N 0 1 Y N N N N N -45.448 -29.255 6.777 4.907 -1.860 -0.240 N3 A1D3X 18 A1D3X N4 N4 N 0 1 Y N N N N N -47.834 -28.891 6.389 6.126 0.304 -0.329 N4 A1D3X 19 A1D3X N5 N5 N 0 1 N N N N N N -44.854 -32.634 2.066 -4.822 0.566 -0.970 N5 A1D3X 20 A1D3X O1 O1 O 0 1 N N N N N N -45.996 -28.924 1.681 1.481 1.643 0.326 O1 A1D3X 21 A1D3X O2 O2 O 0 1 N N N N N N -42.844 -31.952 2.914 -3.283 2.215 -0.732 O2 A1D3X 22 A1D3X H18 H1 H 0 1 N N N N N N -48.255 -28.630 3.134 3.767 2.531 0.059 H18 A1D3X 23 A1D3X H17 H2 H 0 1 N N N N N N -49.727 -28.572 5.324 6.351 2.468 -0.288 H17 A1D3X 24 A1D3X H3 H3 H 0 1 N N N N N N -47.554 -32.913 1.609 -3.571 -1.817 -0.920 H3 A1D3X 25 A1D3X H2 H4 H 0 1 N N N N N N -46.999 -31.211 1.463 -4.954 -2.769 -0.328 H2 A1D3X 26 A1D3X H1 H5 H 0 1 N N N N N N -47.494 -32.124 -0.003 -5.039 -1.969 -1.916 H1 A1D3X 27 A1D3X H15 H6 H 0 1 N N N N N N -43.417 -29.524 6.641 3.635 -3.483 -0.126 H15 A1D3X 28 A1D3X H4 H7 H 0 1 N N N N N N -46.112 -34.780 0.892 -7.060 -1.592 0.402 H4 A1D3X 29 A1D3X H6 H8 H 0 1 N N N N N N -45.938 -34.134 -0.775 -7.165 0.181 0.277 H6 A1D3X 30 A1D3X H5 H9 H 0 1 N N N N N N -44.477 -34.472 0.214 -7.157 -0.817 -1.197 H5 A1D3X 31 A1D3X H8 H10 H 0 1 N N N N N N -45.179 -30.708 -0.068 -5.395 0.014 1.850 H8 A1D3X 32 A1D3X H7 H11 H 0 1 N N N N N N -44.695 -32.077 -1.125 -4.343 -1.420 1.598 H7 A1D3X 33 A1D3X H9 H12 H 0 1 N N N N N N -42.749 -32.513 0.079 -3.341 1.173 1.759 H9 A1D3X 34 A1D3X H10 H13 H 0 1 N N N N N N -41.653 -30.455 1.077 -2.040 -1.009 1.599 H10 A1D3X 35 A1D3X H11 H14 H 0 1 N N N N N N -42.156 -30.329 -0.642 -2.271 -0.951 -0.165 H11 A1D3X 36 A1D3X H12 H15 H 0 1 N N N N N N -42.629 -28.239 0.573 -1.129 1.249 -0.243 H12 A1D3X 37 A1D3X H13 H16 H 0 1 N N N N N N -44.154 -29.025 0.041 -0.898 1.191 1.521 H13 A1D3X 38 A1D3X H14 H17 H 0 1 N N N N N N -43.075 -29.203 2.814 0.192 -1.163 0.403 H14 A1D3X 39 A1D3X H16 H18 H 0 1 N N N N N N -48.142 -28.900 7.340 7.045 0.024 -0.458 H16 A1D3X 40 A1D3X H19 H19 H 0 1 N N N N N N -45.246 -32.968 2.923 -5.219 0.863 -1.803 H19 A1D3X 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3X C4 C5 SING N N 1 A1D3X C4 C2 SING N N 2 A1D3X C3 C2 SING N N 3 A1D3X C6 C5 SING N N 4 A1D3X C6 C7 SING N N 5 A1D3X C5 C15 SING N N 6 A1D3X C7 N1 SING N N 7 A1D3X C2 C1 SING N N 8 A1D3X C2 N5 SING N N 9 A1D3X O1 C8 DOUB N N 10 A1D3X C15 N5 SING N N 11 A1D3X C15 O2 DOUB N N 12 A1D3X N1 C8 SING N N 13 A1D3X C8 C9 SING N N 14 A1D3X C9 C14 DOUB Y N 15 A1D3X C9 N2 SING Y N 16 A1D3X C13 C14 SING Y N 17 A1D3X C13 C12 DOUB Y N 18 A1D3X C14 C11 SING Y N 19 A1D3X N2 C10 DOUB Y N 20 A1D3X C12 N4 SING Y N 21 A1D3X C11 N4 SING Y N 22 A1D3X C11 N3 DOUB Y N 23 A1D3X C10 N3 SING Y N 24 A1D3X C13 H18 SING N N 25 A1D3X C12 H17 SING N N 26 A1D3X C1 H3 SING N N 27 A1D3X C1 H2 SING N N 28 A1D3X C1 H1 SING N N 29 A1D3X C10 H15 SING N N 30 A1D3X C3 H4 SING N N 31 A1D3X C3 H6 SING N N 32 A1D3X C3 H5 SING N N 33 A1D3X C4 H8 SING N N 34 A1D3X C4 H7 SING N N 35 A1D3X C5 H9 SING N N 36 A1D3X C6 H10 SING N N 37 A1D3X C6 H11 SING N N 38 A1D3X C7 H12 SING N N 39 A1D3X C7 H13 SING N N 40 A1D3X N1 H14 SING N N 41 A1D3X N4 H16 SING N N 42 A1D3X N5 H19 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3X SMILES ACDLabs 14.52 "CC1(C)CC(CCNC(=O)c2ncnc3[NH]ccc32)C(=O)N1" A1D3X InChI InChI 1.06 "InChI=1S/C15H19N5O2/c1-15(2)7-9(13(21)20-15)3-5-17-14(22)11-10-4-6-16-12(10)19-8-18-11/h4,6,8-9H,3,5,7H2,1-2H3,(H,17,22)(H,20,21)(H,16,18,19)/t9-/m1/s1" A1D3X InChIKey InChI 1.06 NOSLQTOBZDOUMD-SECBINFHSA-N A1D3X SMILES_CANONICAL CACTVS 3.385 "CC1(C)C[C@@H](CCNC(=O)c2ncnc3[nH]ccc23)C(=O)N1" A1D3X SMILES CACTVS 3.385 "CC1(C)C[CH](CCNC(=O)c2ncnc3[nH]ccc23)C(=O)N1" A1D3X SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1(C[C@H](C(=O)N1)CCNC(=O)c2c3cc[nH]c3ncn2)C" A1D3X SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(CC(C(=O)N1)CCNC(=O)c2c3cc[nH]c3ncn2)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3X "SYSTEMATIC NAME" ACDLabs 14.52 "N-{2-[(3R)-5,5-dimethyl-2-oxopyrrolidin-3-yl]ethyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1D3X "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-[(3~{R})-5,5-dimethyl-2-oxidanylidene-pyrrolidin-3-yl]ethyl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3X "Create component" 2026-09-01 RCSB A1D3X "Initial release" 2026-11-04 RCSB #