data_A1D3Y # _chem_comp.id A1D3Y _chem_comp.name "[(3S)-3-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D3Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D3Y C13 C1 C 0 1 N N N N N N -44.004 -29.121 2.185 1.403 0.801 0.075 C13 A1D3Y 1 A1D3Y C11 C2 C 0 1 Y N N N N N -48.010 -28.784 4.521 -2.436 -1.690 -0.349 C11 A1D3Y 2 A1D3Y C12 C3 C 0 1 Y N N N N N -46.634 -29.067 4.824 -2.108 -0.283 -0.129 C12 A1D3Y 3 A1D3Y C1 C4 C 0 1 N N N N N N -42.280 -30.054 0.634 2.784 -0.450 -1.590 C1 A1D3Y 4 A1D3Y C10 C5 C 0 1 Y N N N N N -48.679 -28.734 5.717 -3.776 -1.778 -0.377 C10 A1D3Y 5 A1D3Y C2 C6 C 0 1 N N S N N N -43.613 -30.365 1.358 2.745 0.105 -0.165 C2 A1D3Y 6 A1D3Y C3 C7 C 0 1 N N N N N N -43.430 -31.552 2.329 3.882 1.111 0.023 C3 A1D3Y 7 A1D3Y C4 C8 C 0 1 N N N N N N -44.710 -30.797 0.348 2.906 -1.042 0.836 C4 A1D3Y 8 A1D3Y C5 C9 C 0 1 N N N N N N -46.153 -30.392 0.657 1.731 -2.013 0.681 C5 A1D3Y 9 A1D3Y C6 C10 C 0 1 N N N N N N -46.419 -29.950 2.102 0.419 -1.256 0.897 C6 A1D3Y 10 A1D3Y C7 C11 C 0 1 Y N N N N N -45.421 -29.234 4.120 -0.921 0.454 -0.003 C7 A1D3Y 11 A1D3Y C8 C12 C 0 1 Y N N N N N -44.330 -29.547 6.157 -2.185 2.364 0.275 C8 A1D3Y 12 A1D3Y C9 C13 C 0 1 Y N N N N N -46.521 -29.154 6.229 -3.337 0.397 -0.039 C9 A1D3Y 13 A1D3Y N1 N1 N 0 1 N N N N N N -45.357 -29.162 2.732 0.312 -0.169 -0.085 N1 A1D3Y 14 A1D3Y N2 N2 N 0 1 Y N N N N N -44.287 -29.478 4.823 -1.010 1.765 0.197 N2 A1D3Y 15 A1D3Y N3 N3 N 0 1 Y N N N N N -45.396 -29.383 6.941 -3.323 1.714 0.162 N3 A1D3Y 16 A1D3Y N4 N4 N 0 1 Y N N N N N -47.774 -28.951 6.743 -4.326 -0.535 -0.193 N4 A1D3Y 17 A1D3Y O1 O1 O 0 1 N N N N N N -42.743 -31.221 3.513 5.135 0.461 -0.200 O1 A1D3Y 18 A1D3Y H18 H1 H 0 1 N N N N N N -43.297 -29.028 3.022 1.381 1.208 1.086 H18 A1D3Y 19 A1D3Y H17 H2 H 0 1 N N N N N N -43.922 -28.237 1.536 1.279 1.610 -0.645 H17 A1D3Y 20 A1D3Y H16 H3 H 0 1 N N N N N N -48.436 -28.639 3.539 -1.735 -2.503 -0.470 H16 A1D3Y 21 A1D3Y H2 H4 H 0 1 N N N N N N -41.523 -29.751 1.372 2.666 0.367 -2.302 H2 A1D3Y 22 A1D3Y H3 H5 H 0 1 N N N N N N -41.934 -30.952 0.101 3.740 -0.945 -1.761 H3 A1D3Y 23 A1D3Y H1 H6 H 0 1 N N N N N N -42.436 -29.238 -0.087 1.974 -1.167 -1.723 H1 A1D3Y 24 A1D3Y H15 H7 H 0 1 N N N N N N -49.737 -28.555 5.839 -4.336 -2.689 -0.524 H15 A1D3Y 25 A1D3Y H5 H8 H 0 1 N N N N N N -44.425 -31.933 2.601 3.766 1.929 -0.689 H5 A1D3Y 26 A1D3Y H4 H9 H 0 1 N N N N N N -42.865 -32.340 1.810 3.854 1.507 1.038 H4 A1D3Y 27 A1D3Y H7 H10 H 0 1 N N N N N N -44.683 -31.895 0.281 3.841 -1.568 0.640 H7 A1D3Y 28 A1D3Y H8 H11 H 0 1 N N N N N N -44.448 -30.364 -0.629 2.917 -0.643 1.850 H8 A1D3Y 29 A1D3Y H10 H12 H 0 1 N N N N N N -46.421 -29.557 -0.008 1.743 -2.441 -0.321 H10 A1D3Y 30 A1D3Y H9 H13 H 0 1 N N N N N N -46.801 -31.255 0.442 1.818 -2.809 1.419 H9 A1D3Y 31 A1D3Y H12 H14 H 0 1 N N N N N N -47.337 -29.344 2.106 -0.420 -1.941 0.773 H12 A1D3Y 32 A1D3Y H11 H15 H 0 1 N N N N N N -46.574 -30.854 2.709 0.401 -0.839 1.904 H11 A1D3Y 33 A1D3Y H13 H16 H 0 1 N N N N N N -43.396 -29.760 6.656 -2.213 3.431 0.438 H13 A1D3Y 34 A1D3Y H14 H17 H 0 1 N N N N N N -48.002 -28.958 7.717 -5.277 -0.345 -0.175 H14 A1D3Y 35 A1D3Y H6 H18 H 0 1 N N N N N N -42.666 -31.993 4.061 5.903 1.040 -0.097 H6 A1D3Y 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D3Y C4 C5 SING N N 1 A1D3Y C4 C2 SING N N 2 A1D3Y C1 C2 SING N N 3 A1D3Y C5 C6 SING N N 4 A1D3Y C2 C13 SING N N 5 A1D3Y C2 C3 SING N N 6 A1D3Y C6 N1 SING N N 7 A1D3Y C13 N1 SING N N 8 A1D3Y C3 O1 SING N N 9 A1D3Y N1 C7 SING N N 10 A1D3Y C7 N2 DOUB Y N 11 A1D3Y C7 C12 SING Y N 12 A1D3Y C11 C12 SING Y N 13 A1D3Y C11 C10 DOUB Y N 14 A1D3Y N2 C8 SING Y N 15 A1D3Y C12 C9 DOUB Y N 16 A1D3Y C10 N4 SING Y N 17 A1D3Y C8 N3 DOUB Y N 18 A1D3Y C9 N4 SING Y N 19 A1D3Y C9 N3 SING Y N 20 A1D3Y C13 H18 SING N N 21 A1D3Y C13 H17 SING N N 22 A1D3Y C11 H16 SING N N 23 A1D3Y C1 H2 SING N N 24 A1D3Y C1 H3 SING N N 25 A1D3Y C1 H1 SING N N 26 A1D3Y C10 H15 SING N N 27 A1D3Y C3 H5 SING N N 28 A1D3Y C3 H4 SING N N 29 A1D3Y C4 H7 SING N N 30 A1D3Y C4 H8 SING N N 31 A1D3Y C5 H10 SING N N 32 A1D3Y C5 H9 SING N N 33 A1D3Y C6 H12 SING N N 34 A1D3Y C6 H11 SING N N 35 A1D3Y C8 H13 SING N N 36 A1D3Y N4 H14 SING N N 37 A1D3Y O1 H6 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D3Y SMILES ACDLabs 14.52 "CC1(CCCN(C1)c1ncnc2[NH]ccc12)CO" A1D3Y InChI InChI 1.06 "InChI=1S/C13H18N4O/c1-13(8-18)4-2-6-17(7-13)12-10-3-5-14-11(10)15-9-16-12/h3,5,9,18H,2,4,6-8H2,1H3,(H,14,15,16)/t13-/m0/s1" A1D3Y InChIKey InChI 1.06 HKOBZQSVULRCLA-ZDUSSCGKSA-N A1D3Y SMILES_CANONICAL CACTVS 3.385 "C[C@]1(CO)CCCN(C1)c2ncnc3[nH]ccc23" A1D3Y SMILES CACTVS 3.385 "C[C]1(CO)CCCN(C1)c2ncnc3[nH]ccc23" A1D3Y SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@]1(CCCN(C1)c2c3cc[nH]c3ncn2)CO" A1D3Y SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(CCCN(C1)c2c3cc[nH]c3ncn2)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D3Y "SYSTEMATIC NAME" ACDLabs 14.52 "[(3S)-3-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]methanol" A1D3Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(3~{S})-3-methyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D3Y "Create component" 2026-09-01 RCSB A1D3Y "Initial release" 2026-11-04 RCSB #