data_A1D40 # _chem_comp.id A1D40 _chem_comp.name "N-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H12 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-03 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 252.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D40 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15ED _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D40 C13 C1 C 0 1 Y N N N N N -47.351 -34.059 0.131 3.908 1.411 1.486 C13 A1D40 1 A1D40 C11 C2 C 0 1 Y N N N N N -45.131 -34.795 -0.548 5.346 0.338 -0.108 C11 A1D40 2 A1D40 C12 C3 C 0 1 Y N N N N N -46.530 -34.937 -0.599 5.170 1.205 0.956 C12 A1D40 3 A1D40 C1 C4 C 0 1 N N N N N N -44.742 -31.803 1.798 1.821 -0.816 -0.702 C1 A1D40 4 A1D40 C10 C5 C 0 1 Y N N N N N -44.553 -33.776 0.234 4.262 -0.317 -0.655 C10 A1D40 5 A1D40 C14 C6 C 0 1 Y N N N N N -46.774 -33.038 0.913 2.818 0.754 0.956 C14 A1D40 6 A1D40 C2 C7 C 0 1 N N N N N N -44.880 -29.358 2.302 -0.563 -1.314 -0.760 C2 A1D40 7 A1D40 C3 C8 C 0 1 Y N N N N N -45.092 -29.347 3.808 -1.808 -0.926 -0.005 C3 A1D40 8 A1D40 C4 C9 C 0 1 Y N N N N N -44.163 -29.483 5.929 -3.297 -1.291 1.715 C4 A1D40 9 A1D40 C5 C10 C 0 1 Y N N N N N -46.373 -29.171 5.822 -3.728 0.496 0.338 C5 A1D40 10 A1D40 C6 C11 C 0 1 Y N N N N N -48.497 -28.864 5.083 -3.532 1.987 -1.328 C6 A1D40 11 A1D40 C7 C12 C 0 1 Y N N N N N -47.722 -28.969 3.953 -2.481 1.164 -1.472 C7 A1D40 12 A1D40 C8 C13 C 0 1 Y N N N N N -46.368 -29.163 4.400 -2.570 0.172 -0.401 C8 A1D40 13 A1D40 C9 C14 C 0 1 Y N N N N N -45.368 -32.889 0.972 2.988 -0.117 -0.121 C9 A1D40 14 A1D40 N1 N1 N 0 1 N N N N N N -45.295 -30.590 1.637 0.592 -0.621 -0.184 N1 A1D40 15 A1D40 N2 N2 N 0 1 Y N N N N N -44.004 -29.493 4.602 -2.207 -1.623 1.047 N2 A1D40 16 A1D40 N3 N3 N 0 1 Y N N N N N -45.288 -29.328 6.634 -4.046 -0.260 1.383 N3 A1D40 17 A1D40 N4 N4 N 0 1 Y N N N N N -47.684 -28.984 6.199 -4.282 1.601 -0.248 N4 A1D40 18 A1D40 O1 O1 O 0 1 N N N N N N -43.796 -32.038 2.553 1.971 -1.566 -1.646 O1 A1D40 19 A1D40 H11 H1 H 0 1 N N N N N N -48.425 -34.167 0.092 3.778 2.086 2.320 H11 A1D40 20 A1D40 H9 H2 H 0 1 N N N N N N -44.500 -35.468 -1.109 6.332 0.185 -0.521 H9 A1D40 21 A1D40 H10 H3 H 0 1 N N N N N N -46.973 -35.719 -1.198 6.020 1.722 1.375 H10 A1D40 22 A1D40 H8 H4 H 0 1 N N N N N N -43.479 -33.672 0.270 4.399 -0.983 -1.494 H8 A1D40 23 A1D40 H12 H5 H 0 1 N N N N N N -47.409 -32.365 1.471 1.835 0.912 1.374 H12 A1D40 24 A1D40 H2 H6 H 0 1 N N N N N N -43.808 -29.207 2.106 -0.415 -2.391 -0.687 H2 A1D40 25 A1D40 H3 H7 H 0 1 N N N N N N -45.453 -28.525 1.869 -0.671 -1.032 -1.807 H3 A1D40 26 A1D40 H4 H8 H 0 1 N N N N N N -43.262 -29.618 6.509 -3.583 -1.885 2.570 H4 A1D40 27 A1D40 H6 H9 H 0 1 N N N N N N -49.566 -28.713 5.099 -3.750 2.831 -1.965 H6 A1D40 28 A1D40 H7 H10 H 0 1 N N N N N N -48.063 -28.916 2.929 -1.717 1.223 -2.233 H7 A1D40 29 A1D40 H1 H11 H 0 1 N N N N N N -46.064 -30.524 1.001 0.473 -0.022 0.570 H1 A1D40 30 A1D40 H5 H12 H 0 1 N N N N N N -48.005 -28.941 7.145 -5.089 2.046 0.056 H5 A1D40 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D40 C12 C11 DOUB Y N 1 A1D40 C12 C13 SING Y N 2 A1D40 C11 C10 SING Y N 3 A1D40 C13 C14 DOUB Y N 4 A1D40 C10 C9 DOUB Y N 5 A1D40 C14 C9 SING Y N 6 A1D40 C9 C1 SING N N 7 A1D40 N1 C1 SING N N 8 A1D40 N1 C2 SING N N 9 A1D40 C1 O1 DOUB N N 10 A1D40 C2 C3 SING N N 11 A1D40 C3 C8 DOUB Y N 12 A1D40 C3 N2 SING Y N 13 A1D40 C7 C8 SING Y N 14 A1D40 C7 C6 DOUB Y N 15 A1D40 C8 C5 SING Y N 16 A1D40 N2 C4 DOUB Y N 17 A1D40 C6 N4 SING Y N 18 A1D40 C5 N4 SING Y N 19 A1D40 C5 N3 DOUB Y N 20 A1D40 C4 N3 SING Y N 21 A1D40 C13 H11 SING N N 22 A1D40 C11 H9 SING N N 23 A1D40 C12 H10 SING N N 24 A1D40 C10 H8 SING N N 25 A1D40 C14 H12 SING N N 26 A1D40 C2 H2 SING N N 27 A1D40 C2 H3 SING N N 28 A1D40 C4 H4 SING N N 29 A1D40 C6 H6 SING N N 30 A1D40 C7 H7 SING N N 31 A1D40 N1 H1 SING N N 32 A1D40 N4 H5 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D40 SMILES ACDLabs 14.52 "O=C(NCc1ncnc2[NH]ccc12)c1ccccc1" A1D40 InChI InChI 1.06 "InChI=1S/C14H12N4O/c19-14(10-4-2-1-3-5-10)16-8-12-11-6-7-15-13(11)18-9-17-12/h1-7,9H,8H2,(H,16,19)(H,15,17,18)" A1D40 InChIKey InChI 1.06 MLEWHGHPJMFQRP-UHFFFAOYSA-N A1D40 SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1ncnc2[nH]ccc12)c3ccccc3" A1D40 SMILES CACTVS 3.385 "O=C(NCc1ncnc2[nH]ccc12)c3ccccc3" A1D40 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)NCc2c3cc[nH]c3ncn2" A1D40 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)NCc2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D40 "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl]benzamide" A1D40 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylmethyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D40 "Create component" 2026-09-03 RCSB A1D40 "Initial release" 2026-11-04 RCSB #