data_A1D47 # _chem_comp.id A1D47 _chem_comp.name "(3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-(oxan-4-yloxy)-1~{H}-indol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H19 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-((tetrahydro-2H-pyran-4-yl)oxy)indolin-2-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-21 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.394 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D47 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XGA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D47 C10 C1 C 0 1 N N N N N N -36.332 -29.832 59.648 5.606 1.658 1.271 C10 A1D47 1 A1D47 C12 C2 C 0 1 N N N N N N -35.298 -30.706 57.715 5.202 2.674 -0.863 C12 A1D47 2 A1D47 C13 C3 C 0 1 N N N N N N -35.373 -29.306 57.115 3.774 2.125 -0.909 C13 A1D47 3 A1D47 C14 C4 C 0 1 Y N N N N N -32.768 -27.821 56.225 3.293 -1.858 0.049 C14 A1D47 4 A1D47 C15 C5 C 0 1 Y N N N N N -32.187 -27.248 55.066 3.113 -3.230 0.075 C15 A1D47 5 A1D47 C16 C6 C 0 1 Y N N N N N -32.244 -25.860 54.880 1.849 -3.776 -0.020 C16 A1D47 6 A1D47 C17 C7 C 0 1 N N N N N N -34.064 -24.503 57.849 -0.431 -0.967 -0.306 C17 A1D47 7 A1D47 C18 C8 C 0 1 N N N N N N -34.699 -24.699 59.017 -0.751 0.357 -0.374 C18 A1D47 8 A1D47 C19 C9 C 0 1 Y N N N N N -35.553 -23.619 59.725 -2.156 0.776 -0.317 C19 A1D47 9 A1D47 C20 C10 C 0 1 Y N N N N N -36.260 -22.656 58.999 -3.031 0.161 0.580 C20 A1D47 10 A1D47 C21 C11 C 0 1 Y N N N N N -37.037 -21.670 59.661 -4.363 0.567 0.626 C21 A1D47 11 A1D47 C22 C12 C 0 1 Y N N N N N -37.114 -21.663 61.020 -4.807 1.591 -0.231 C22 A1D47 12 A1D47 C24 C13 C 0 1 Y N N N N N -38.333 -20.012 60.273 -6.476 0.879 1.027 C24 A1D47 13 A1D47 C26 C14 C 0 1 Y N N N N N -36.408 -22.646 61.773 -3.922 2.193 -1.120 C26 A1D47 14 A1D47 C27 C15 C 0 1 Y N N N N N -35.642 -23.609 61.120 -2.617 1.800 -1.161 C27 A1D47 15 A1D47 O01 O1 O 0 1 N N N N N N -34.098 -22.122 57.421 -2.564 -2.059 -0.461 O01 A1D47 16 A1D47 C02 C16 C 0 1 N N N N N N -33.798 -23.228 57.109 -1.353 -2.116 -0.352 C02 A1D47 17 A1D47 N03 N1 N 0 1 N N N N N N -33.079 -23.556 55.887 -0.620 -3.238 -0.254 N03 A1D47 18 A1D47 C04 C17 C 0 1 Y N N N N N -32.880 -25.061 55.846 0.736 -2.951 -0.143 C04 A1D47 19 A1D47 C05 C18 C 0 1 Y N N N N N -33.465 -25.633 57.015 0.917 -1.563 -0.169 C05 A1D47 20 A1D47 C06 C19 C 0 1 Y N N N N N -33.409 -27.040 57.209 2.197 -1.017 -0.073 C06 A1D47 21 A1D47 O07 O2 O 0 1 N N N N N N -33.976 -27.702 58.327 2.369 0.330 -0.095 O07 A1D47 22 A1D47 C08 C20 C 0 1 N N N N N N -35.301 -28.142 58.054 3.714 0.812 -0.120 C08 A1D47 23 A1D47 C09 C21 C 0 1 N N N N N N -36.020 -28.370 59.332 4.194 1.068 1.312 C09 A1D47 24 A1D47 O11 O3 O 0 1 N N N N N N -35.286 -30.719 59.170 5.597 2.859 0.497 O11 A1D47 25 A1D47 N23 N2 N 0 1 Y N N N N N -37.917 -20.634 61.373 -6.146 1.764 0.047 N23 A1D47 26 A1D47 N25 N3 N 0 1 Y N N N N N -37.806 -20.634 59.213 -5.434 0.178 1.367 N25 A1D47 27 A1D47 H1 H1 H 0 1 N N N N N N -37.281 -30.107 59.165 5.936 1.882 2.286 H1 A1D47 28 A1D47 H2 H2 H 0 1 N N N N N N -36.428 -29.949 60.738 6.288 0.938 0.818 H2 A1D47 29 A1D47 H3 H3 H 0 1 N N N N N N -36.171 -31.279 57.370 5.878 1.967 -1.345 H3 A1D47 30 A1D47 H4 H4 H 0 1 N N N N N N -34.377 -31.189 57.356 5.241 3.629 -1.387 H4 A1D47 31 A1D47 H5 H5 H 0 1 N N N N N N -34.539 -29.208 56.405 3.091 2.848 -0.463 H5 A1D47 32 A1D47 H6 H6 H 0 1 N N N N N N -36.327 -29.232 56.572 3.487 1.941 -1.944 H6 A1D47 33 A1D47 H7 H7 H 0 1 N N N N N N -32.718 -28.891 56.359 4.286 -1.442 0.127 H7 A1D47 34 A1D47 H8 H8 H 0 1 N N N N N N -31.704 -27.876 54.332 3.970 -3.879 0.170 H8 A1D47 35 A1D47 H9 H9 H 0 1 N N N N N N -31.804 -25.409 54.003 1.723 -4.849 0.002 H9 A1D47 36 A1D47 H10 H10 H 0 1 N N N N N N -34.608 -25.666 59.489 0.029 1.097 -0.470 H10 A1D47 37 A1D47 H11 H11 H 0 1 N N N N N N -36.214 -22.662 57.920 -2.678 -0.624 1.233 H11 A1D47 38 A1D47 H12 H12 H 0 1 N N N N N N -38.985 -19.152 60.241 -7.459 0.774 1.460 H12 A1D47 39 A1D47 H13 H13 H 0 1 N N N N N N -36.467 -22.644 62.851 -4.269 2.978 -1.776 H13 A1D47 40 A1D47 H14 H14 H 0 1 N N N N N N -35.113 -24.354 61.696 -1.935 2.276 -1.850 H14 A1D47 41 A1D47 H15 H15 H 0 1 N N N N N N -32.770 -22.904 55.195 -0.990 -4.135 -0.258 H15 A1D47 42 A1D47 H16 H16 H 0 1 N N N N N N -35.819 -27.312 57.552 4.358 0.072 -0.595 H16 A1D47 43 A1D47 H17 H17 H 0 1 N N N N N N -35.400 -27.970 60.148 4.208 0.128 1.865 H17 A1D47 44 A1D47 H18 H18 H 0 1 N N N N N N -36.972 -27.820 59.291 3.520 1.770 1.802 H18 A1D47 45 A1D47 H19 H19 H 0 1 N N N N N N -38.159 -20.381 62.310 -6.743 2.400 -0.377 H19 A1D47 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D47 C16 C15 DOUB Y N 1 A1D47 C16 C04 SING Y N 2 A1D47 C15 C14 SING Y N 3 A1D47 C04 N03 SING N N 4 A1D47 C04 C05 DOUB Y N 5 A1D47 N03 C02 SING N N 6 A1D47 C14 C06 DOUB Y N 7 A1D47 C05 C06 SING Y N 8 A1D47 C05 C17 SING N N 9 A1D47 C02 O01 DOUB N N 10 A1D47 C02 C17 SING N N 11 A1D47 C13 C12 SING N N 12 A1D47 C13 C08 SING N N 13 A1D47 C06 O07 SING N N 14 A1D47 C12 O11 SING N N 15 A1D47 C17 C18 DOUB N Z 16 A1D47 C08 O07 SING N N 17 A1D47 C08 C09 SING N N 18 A1D47 C20 C21 DOUB Y N 19 A1D47 C20 C19 SING Y N 20 A1D47 C18 C19 SING N N 21 A1D47 O11 C10 SING N N 22 A1D47 N25 C21 SING Y N 23 A1D47 N25 C24 DOUB Y N 24 A1D47 C09 C10 SING N N 25 A1D47 C21 C22 SING Y N 26 A1D47 C19 C27 DOUB Y N 27 A1D47 C24 N23 SING Y N 28 A1D47 C22 N23 SING Y N 29 A1D47 C22 C26 DOUB Y N 30 A1D47 C27 C26 SING Y N 31 A1D47 C10 H1 SING N N 32 A1D47 C10 H2 SING N N 33 A1D47 C12 H3 SING N N 34 A1D47 C12 H4 SING N N 35 A1D47 C13 H5 SING N N 36 A1D47 C13 H6 SING N N 37 A1D47 C14 H7 SING N N 38 A1D47 C15 H8 SING N N 39 A1D47 C16 H9 SING N N 40 A1D47 C18 H10 SING N N 41 A1D47 C20 H11 SING N N 42 A1D47 C24 H12 SING N N 43 A1D47 C26 H13 SING N N 44 A1D47 C27 H14 SING N N 45 A1D47 N03 H15 SING N N 46 A1D47 C08 H16 SING N N 47 A1D47 C09 H17 SING N N 48 A1D47 C09 H18 SING N N 49 A1D47 N23 H19 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D47 InChI InChI 1.06 "InChI=1S/C21H19N3O3/c25-21-15(10-13-4-5-16-18(11-13)23-12-22-16)20-17(24-21)2-1-3-19(20)27-14-6-8-26-9-7-14/h1-5,10-12,14H,6-9H2,(H,22,23)(H,24,25)/b15-10-" A1D47 InChIKey InChI 1.06 MLNIWJTYHTVNRA-GDNBJRDFSA-N A1D47 SMILES_CANONICAL CACTVS 3.385 "O=C\1Nc2cccc(OC3CCOCC3)c2C\1=C/c4ccc5[nH]cnc5c4" A1D47 SMILES CACTVS 3.385 "O=C1Nc2cccc(OC3CCOCC3)c2C1=Cc4ccc5[nH]cnc5c4" A1D47 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)OC3CCOCC3)/C(=C/c4ccc5c(c4)nc[nH]5)/C(=O)N2" A1D47 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)OC3CCOCC3)C(=Cc4ccc5c(c4)nc[nH]5)C(=O)N2" # _pdbx_chem_comp_identifier.comp_id A1D47 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-(oxan-4-yloxy)-1~{H}-indol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D47 "Create component" 2023-12-21 PDBC A1D47 "Initial release" 2024-06-12 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D47 _pdbx_chem_comp_synonyms.name "(Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-((tetrahydro-2H-pyran-4-yl)oxy)indolin-2-one" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #