data_A1D48 # _chem_comp.id A1D48 _chem_comp.name "(3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-oxidanyl-1~{H}-indol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H11 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-hydroxyindolin-2-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-21 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 277.277 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D48 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XGT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D48 C10 C1 C 0 1 Y N N N N N -20.939 29.984 13.598 -2.987 -1.182 0.197 C10 A1D48 1 A1D48 C13 C2 C 0 1 Y N N N N N -18.713 33.281 10.866 1.220 0.959 0.116 C13 A1D48 2 A1D48 C15 C3 C 0 1 Y N N N N N -17.505 34.522 9.317 3.399 1.656 0.849 C15 A1D48 3 A1D48 C20 C4 C 0 1 Y N N N N N -19.875 34.973 9.590 3.148 -0.349 -0.495 C20 A1D48 4 A1D48 C21 C5 C 0 1 Y N N N N N -19.865 33.973 10.563 1.771 -0.146 -0.535 C21 A1D48 5 A1D48 O01 O1 O 0 1 N N N N N N -21.545 31.833 10.685 0.366 -1.712 0.709 O01 A1D48 6 A1D48 C02 C6 C 0 1 N N N N N N -21.097 31.333 11.652 -0.749 -1.276 0.488 C02 A1D48 7 A1D48 C03 C7 C 0 1 N N N N N N -19.757 31.504 12.263 -1.085 0.124 0.178 C03 A1D48 8 A1D48 C04 C8 C 0 1 Y N N N N N -19.689 30.634 13.477 -2.554 0.134 -0.005 C04 A1D48 9 A1D48 C05 C9 C 0 1 Y N N N N N -18.661 30.423 14.392 -3.473 1.138 -0.314 C05 A1D48 10 A1D48 O06 O2 O 0 1 N N N N N N -17.422 31.071 14.299 -3.050 2.414 -0.510 O06 A1D48 11 A1D48 C07 C10 C 0 1 Y N N N N N -18.893 29.539 15.441 -4.819 0.826 -0.420 C07 A1D48 12 A1D48 C08 C11 C 0 1 Y N N N N N -20.153 28.880 15.545 -5.246 -0.475 -0.220 C08 A1D48 13 A1D48 C09 C12 C 0 1 Y N N N N N -21.173 29.106 14.619 -4.342 -1.474 0.086 C09 A1D48 14 A1D48 N11 N1 N 0 1 N N N N N N -21.836 30.407 12.471 -1.889 -1.986 0.483 N11 A1D48 15 A1D48 C12 C13 C 0 1 N N N N N N -18.717 32.213 11.918 -0.229 1.183 0.081 C12 A1D48 16 A1D48 C14 C14 C 0 1 Y N N N N N -17.514 33.545 10.263 2.051 1.854 0.810 C14 A1D48 17 A1D48 C16 C15 C 0 1 Y N N N N N -18.694 35.223 9.000 3.965 0.563 0.200 C16 A1D48 18 A1D48 N17 N2 N 0 1 Y N N N N N -18.892 36.206 8.137 5.255 0.100 0.058 N17 A1D48 19 A1D48 C18 C16 C 0 1 Y N N N N N -20.177 36.537 8.204 5.201 -1.033 -0.694 C18 A1D48 20 A1D48 N19 N3 N 0 1 Y N N N N N -20.839 35.795 9.097 3.969 -1.300 -1.013 N19 A1D48 21 A1D48 H1 H1 H 0 1 N N N N N N -16.586 34.765 8.805 4.030 2.349 1.385 H1 A1D48 22 A1D48 H2 H2 H 0 1 N N N N N N -20.778 33.737 11.089 1.134 -0.838 -1.066 H2 A1D48 23 A1D48 H3 H3 H 0 1 N N N N N N -16.863 30.791 15.015 -2.821 2.616 -1.428 H3 A1D48 24 A1D48 H4 H4 H 0 1 N N N N N N -18.122 29.353 16.174 -5.535 1.598 -0.659 H4 A1D48 25 A1D48 H5 H5 H 0 1 N N N N N N -20.322 28.190 16.359 -6.296 -0.712 -0.303 H5 A1D48 26 A1D48 H6 H6 H 0 1 N N N N N N -22.123 28.600 14.707 -4.690 -2.485 0.239 H6 A1D48 27 A1D48 H7 H7 H 0 1 N N N N N N -22.776 30.101 12.317 -1.941 -2.939 0.659 H7 A1D48 28 A1D48 H8 H8 H 0 1 N N N N N N -17.787 32.015 12.430 -0.619 2.185 -0.021 H8 A1D48 29 A1D48 H9 H9 H 0 1 N N N N N N -16.617 33.003 10.526 1.619 2.706 1.315 H9 A1D48 30 A1D48 H10 H10 H 0 1 N N N N N N -18.203 36.623 7.544 6.056 0.510 0.421 H10 A1D48 31 A1D48 H11 H11 H 0 1 N N N N N N -20.633 37.314 7.608 6.056 -1.628 -0.978 H11 A1D48 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D48 N17 C18 SING Y N 1 A1D48 N17 C16 SING Y N 2 A1D48 C18 N19 DOUB Y N 3 A1D48 C16 C15 DOUB Y N 4 A1D48 C16 C20 SING Y N 5 A1D48 N19 C20 SING Y N 6 A1D48 C15 C14 SING Y N 7 A1D48 C20 C21 DOUB Y N 8 A1D48 C14 C13 DOUB Y N 9 A1D48 C21 C13 SING Y N 10 A1D48 O01 C02 DOUB N N 11 A1D48 C13 C12 SING N N 12 A1D48 C02 C03 SING N N 13 A1D48 C02 N11 SING N N 14 A1D48 C12 C03 DOUB N Z 15 A1D48 C03 C04 SING N N 16 A1D48 N11 C10 SING N N 17 A1D48 C04 C10 DOUB Y N 18 A1D48 C04 C05 SING Y N 19 A1D48 C10 C09 SING Y N 20 A1D48 O06 C05 SING N N 21 A1D48 C05 C07 DOUB Y N 22 A1D48 C09 C08 DOUB Y N 23 A1D48 C07 C08 SING Y N 24 A1D48 C15 H1 SING N N 25 A1D48 C21 H2 SING N N 26 A1D48 O06 H3 SING N N 27 A1D48 C07 H4 SING N N 28 A1D48 C08 H5 SING N N 29 A1D48 C09 H6 SING N N 30 A1D48 N11 H7 SING N N 31 A1D48 C12 H8 SING N N 32 A1D48 C14 H9 SING N N 33 A1D48 N17 H10 SING N N 34 A1D48 C18 H11 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D48 InChI InChI 1.06 "InChI=1S/C16H11N3O2/c20-14-3-1-2-12-15(14)10(16(21)19-12)6-9-4-5-11-13(7-9)18-8-17-11/h1-8,20H,(H,17,18)(H,19,21)/b10-6-" A1D48 InChIKey InChI 1.06 SDUHFKYEVPUWDL-POHAHGRESA-N A1D48 SMILES_CANONICAL CACTVS 3.385 "Oc1cccc2NC(=O)\C(=C/c3ccc4[nH]cnc4c3)c12" A1D48 SMILES CACTVS 3.385 "Oc1cccc2NC(=O)C(=Cc3ccc4[nH]cnc4c3)c12" A1D48 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)O)/C(=C/c3ccc4c(c3)nc[nH]4)/C(=O)N2" A1D48 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)O)C(=Cc3ccc4c(c3)nc[nH]4)C(=O)N2" # _pdbx_chem_comp_identifier.comp_id A1D48 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-oxidanyl-1~{H}-indol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D48 "Create component" 2023-12-21 PDBC A1D48 "Initial release" 2024-06-12 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D48 _pdbx_chem_comp_synonyms.name "(Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-hydroxyindolin-2-one" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #