data_A1D4E # _chem_comp.id A1D4E _chem_comp.name "(4-methyl-3,6-dihydropyridin-1(2H)-yl)(9H-purin-6-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H13 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 243.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D4E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15OV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D4E C11 C1 C 0 1 N N N N N N -50.336 -30.548 6.225 -2.612 -1.309 -0.922 C11 A1D4E 1 A1D4E C12 C2 C 0 1 N N N N N N -50.445 -31.935 6.864 -3.644 -1.172 0.201 C12 A1D4E 2 A1D4E C1 C3 C 0 1 N N N N N N -51.675 -33.178 8.745 -5.152 0.627 1.255 C1 A1D4E 3 A1D4E C10 C4 C 0 1 Y N N N N N -46.504 -29.266 5.827 2.161 -0.347 0.076 C10 A1D4E 4 A1D4E C2 C5 C 0 1 N N N N N N -51.094 -31.878 8.232 -3.888 0.274 0.513 C2 A1D4E 5 A1D4E C3 C6 C 0 1 N N N N N N -51.204 -30.716 8.898 -3.090 1.241 0.191 C3 A1D4E 6 A1D4E C4 C7 C 0 1 N N N N N N -50.681 -29.386 8.379 -1.805 1.044 -0.564 C4 A1D4E 7 A1D4E C5 C8 C 0 1 N N N N N N -48.714 -28.785 7.026 -0.247 -0.851 -0.420 C5 A1D4E 8 A1D4E C6 C9 C 0 1 Y N N N N N -47.895 -28.979 5.787 0.878 0.102 -0.279 C6 A1D4E 9 A1D4E C7 C10 C 0 1 Y N N N N N -47.791 -29.063 3.469 1.693 2.259 -0.363 C7 A1D4E 10 A1D4E C8 C11 C 0 1 Y N N N N N -45.875 -29.428 4.561 3.191 0.614 0.201 C8 A1D4E 11 A1D4E C9 C12 C 0 1 Y N N N N N -44.460 -29.675 6.207 3.970 -1.401 0.638 C9 A1D4E 12 A1D4E N1 N1 N 0 1 N N N N N N -49.836 -29.539 7.181 -1.497 -0.392 -0.626 N1 A1D4E 13 A1D4E N2 N2 N 0 1 Y N N N N N -48.515 -28.886 4.582 0.698 1.405 -0.486 N2 A1D4E 14 A1D4E N3 N3 N 0 1 Y N N N N N -46.486 -29.334 3.344 2.912 1.887 -0.024 N3 A1D4E 15 A1D4E N4 N4 N 0 1 Y N N N N N -44.549 -29.692 4.865 4.317 -0.087 0.557 N4 A1D4E 16 A1D4E N5 N5 N 0 1 Y N N N N N -45.594 -29.428 6.864 2.706 -1.550 0.356 N5 A1D4E 17 A1D4E O1 O1 O 0 1 N N N N N N -48.330 -27.959 7.854 -0.043 -2.047 -0.350 O1 A1D4E 18 A1D4E H10 H1 H 0 1 N N N N N N -49.644 -30.603 5.372 -2.245 -2.334 -0.963 H10 A1D4E 19 A1D4E H11 H2 H 0 1 N N N N N N -51.331 -30.240 5.871 -3.067 -1.041 -1.875 H11 A1D4E 20 A1D4E H13 H3 H 0 1 N N N N N N -51.049 -32.581 6.210 -4.579 -1.637 -0.111 H13 A1D4E 21 A1D4E H12 H4 H 0 1 N N N N N N -49.435 -32.359 6.967 -3.274 -1.676 1.094 H12 A1D4E 22 A1D4E H3 H5 H 0 1 N N N N N N -52.116 -33.016 9.740 -4.963 0.602 2.328 H3 A1D4E 23 A1D4E H2 H6 H 0 1 N N N N N N -52.453 -33.530 8.052 -5.476 1.627 0.966 H2 A1D4E 24 A1D4E H1 H7 H 0 1 N N N N N N -50.878 -33.933 8.816 -5.932 -0.094 1.007 H1 A1D4E 25 A1D4E H4 H8 H 0 1 N N N N N N -51.694 -30.728 9.861 -3.362 2.245 0.481 H4 A1D4E 26 A1D4E H5 H9 H 0 1 N N N N N N -50.086 -28.908 9.171 -1.913 1.438 -1.575 H5 A1D4E 27 A1D4E H6 H10 H 0 1 N N N N N N -51.538 -28.745 8.126 -0.998 1.569 -0.053 H6 A1D4E 28 A1D4E H7 H11 H 0 1 N N N N N N -48.337 -28.975 2.542 1.501 3.307 -0.540 H7 A1D4E 29 A1D4E H8 H12 H 0 1 N N N N N N -43.527 -29.851 6.721 4.644 -2.204 0.899 H8 A1D4E 30 A1D4E H9 H13 H 0 1 N N N N N N -43.807 -29.861 4.216 5.198 0.285 0.719 H9 A1D4E 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D4E N3 C7 DOUB Y N 1 A1D4E N3 C8 SING Y N 2 A1D4E C7 N2 SING Y N 3 A1D4E C8 N4 SING Y N 4 A1D4E C8 C10 DOUB Y N 5 A1D4E N2 C6 DOUB Y N 6 A1D4E N4 C9 SING Y N 7 A1D4E C6 C10 SING Y N 8 A1D4E C6 C5 SING N N 9 A1D4E C10 N5 SING Y N 10 A1D4E C9 N5 DOUB Y N 11 A1D4E C11 C12 SING N N 12 A1D4E C11 N1 SING N N 13 A1D4E C12 C2 SING N N 14 A1D4E C5 N1 SING N N 15 A1D4E C5 O1 DOUB N N 16 A1D4E N1 C4 SING N N 17 A1D4E C2 C1 SING N N 18 A1D4E C2 C3 DOUB N N 19 A1D4E C4 C3 SING N N 20 A1D4E C11 H10 SING N N 21 A1D4E C11 H11 SING N N 22 A1D4E C12 H13 SING N N 23 A1D4E C12 H12 SING N N 24 A1D4E C1 H3 SING N N 25 A1D4E C1 H2 SING N N 26 A1D4E C1 H1 SING N N 27 A1D4E C3 H4 SING N N 28 A1D4E C4 H5 SING N N 29 A1D4E C4 H6 SING N N 30 A1D4E C7 H7 SING N N 31 A1D4E C9 H8 SING N N 32 A1D4E N4 H9 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D4E SMILES ACDLabs 14.52 "CC1=CCN(CC1)C(=O)c1ncnc2[NH]cnc21" A1D4E InChI InChI 1.06 "InChI=1S/C12H13N5O/c1-8-2-4-17(5-3-8)12(18)10-9-11(15-6-13-9)16-7-14-10/h2,6-7H,3-5H2,1H3,(H,13,14,15,16)" A1D4E InChIKey InChI 1.06 MSCCCQUUVBTLJR-UHFFFAOYSA-N A1D4E SMILES_CANONICAL CACTVS 3.385 "CC1=CCN(CC1)C(=O)c2ncnc3[nH]cnc23" A1D4E SMILES CACTVS 3.385 "CC1=CCN(CC1)C(=O)c2ncnc3[nH]cnc23" A1D4E SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1=CCN(CC1)C(=O)c2c3c([nH]cn3)ncn2" A1D4E SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1=CCN(CC1)C(=O)c2c3c([nH]cn3)ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D4E "SYSTEMATIC NAME" ACDLabs 14.52 "(4-methyl-3,6-dihydropyridin-1(2H)-yl)(9H-purin-6-yl)methanone" A1D4E "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(4-methyl-3,6-dihydro-2~{H}-pyridin-1-yl)-(9~{H}-purin-6-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D4E "Create component" 2026-09-01 RCSB A1D4E "Initial release" 2026-11-04 RCSB #