data_A1D4H # _chem_comp.id A1D4H _chem_comp.name "(1R,3S)-3-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]cyclopentane-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-01 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 274.275 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D4H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15PK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D4H C13 C1 C 0 1 Y N N N N N -46.740 -28.953 4.943 -3.219 0.236 -0.055 C13 A1D4H 1 A1D4H C11 C2 C 0 1 Y N N N N N -48.783 -28.657 5.820 -5.101 1.470 -0.137 C11 A1D4H 2 A1D4H C12 C3 C 0 1 Y N N N N N -48.118 -28.712 4.625 -3.763 1.577 -0.226 C12 A1D4H 3 A1D4H C1 C4 C 0 1 N N N N N N -45.426 -29.119 2.769 -0.732 0.523 -0.227 C1 A1D4H 4 A1D4H C10 C5 C 0 1 Y N N N N N -46.638 -29.035 6.345 -4.331 -0.619 0.132 C10 A1D4H 5 A1D4H C2 C6 C 0 1 N N S N N N -43.925 -29.677 0.892 1.683 0.804 -0.394 C2 A1D4H 6 A1D4H C3 C7 C 0 1 N N N N N N -42.409 -29.674 0.649 2.140 1.382 0.956 C3 A1D4H 7 A1D4H C4 C8 C 0 1 N N N N N N -41.956 -31.146 0.610 3.572 0.859 1.197 C4 A1D4H 8 A1D4H C5 C9 C 0 1 N N R N N N -43.191 -32.026 0.883 4.101 0.535 -0.222 C5 A1D4H 9 A1D4H C6 C10 C 0 1 N N N N N N -43.299 -32.549 2.329 5.206 -0.488 -0.159 C6 A1D4H 10 A1D4H C7 C11 C 0 1 N N N N N N -44.383 -31.115 0.528 2.852 -0.049 -0.929 C7 A1D4H 11 A1D4H C8 C12 C 0 1 Y N N N N N -45.517 -29.111 4.251 -1.932 -0.324 -0.037 C8 A1D4H 12 A1D4H C9 C13 C 0 1 Y N N N N N -44.434 -29.389 6.266 -2.884 -2.393 0.327 C9 A1D4H 13 A1D4H N1 N1 N 0 1 N N N N N N -44.213 -29.440 2.298 0.496 -0.033 -0.206 N1 A1D4H 14 A1D4H N2 N2 N 0 1 Y N N N N N -44.374 -29.343 4.941 -1.819 -1.637 0.157 N2 A1D4H 15 A1D4H N3 N3 N 0 1 Y N N N N N -45.505 -29.249 7.050 -4.111 -1.914 0.313 N3 A1D4H 16 A1D4H N4 N4 N 0 1 Y N N N N N -47.892 -28.846 6.862 -5.452 0.165 0.076 N4 A1D4H 17 A1D4H O1 O1 O 0 1 N N N N N N -46.414 -28.891 2.057 -0.854 1.719 -0.403 O1 A1D4H 18 A1D4H O2 O2 O 0 1 N N N N N N -43.968 -33.604 2.500 5.073 -1.555 -0.709 O2 A1D4H 19 A1D4H O3 O3 O 0 1 N N N N N N -42.746 -31.887 3.246 6.338 -0.213 0.508 O3 A1D4H 20 A1D4H H12 H1 H 0 1 N N N N N N -49.844 -28.491 5.933 -5.796 2.293 -0.221 H12 A1D4H 21 A1D4H H13 H2 H 0 1 N N N N N N -48.545 -28.597 3.640 -3.200 2.484 -0.391 H13 A1D4H 22 A1D4H H2 H3 H 0 1 N N N N N N -44.423 -28.941 0.243 1.462 1.613 -1.091 H2 A1D4H 23 A1D4H H3 H4 H 0 1 N N N N N N -41.897 -29.143 1.465 2.142 2.471 0.915 H3 A1D4H 24 A1D4H H4 H5 H 0 1 N N N N N N -42.181 -29.183 -0.309 1.479 1.040 1.752 H4 A1D4H 25 A1D4H H6 H6 H 0 1 N N N N N N -41.539 -31.383 -0.380 4.185 1.629 1.666 H6 A1D4H 26 A1D4H H5 H7 H 0 1 N N N N N N -41.192 -31.323 1.382 3.551 -0.041 1.811 H5 A1D4H 27 A1D4H H7 H8 H 0 1 N N N N N N -43.179 -32.883 0.193 4.443 1.441 -0.723 H7 A1D4H 28 A1D4H H8 H9 H 0 1 N N N N N N -44.615 -31.185 -0.545 2.714 -1.095 -0.658 H8 A1D4H 29 A1D4H H9 H10 H 0 1 N N N N N N -45.270 -31.396 1.114 2.940 0.058 -2.010 H9 A1D4H 30 A1D4H H10 H11 H 0 1 N N N N N N -43.497 -29.562 6.775 -2.745 -3.454 0.478 H10 A1D4H 31 A1D4H H1 H12 H 0 1 N N N N N N -43.461 -29.521 2.952 0.593 -0.988 -0.065 H1 A1D4H 32 A1D4H H11 H13 H 0 1 N N N N N N -48.126 -28.845 7.834 -6.362 -0.157 0.174 H11 A1D4H 33 A1D4H H14 H14 H 0 1 N N N N N N -42.911 -32.305 4.083 7.018 -0.900 0.520 H14 A1D4H 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D4H C7 C5 SING N N 1 A1D4H C7 C2 SING N N 2 A1D4H C4 C3 SING N N 3 A1D4H C4 C5 SING N N 4 A1D4H C3 C2 SING N N 5 A1D4H C5 C6 SING N N 6 A1D4H C2 N1 SING N N 7 A1D4H O1 C1 DOUB N N 8 A1D4H N1 C1 SING N N 9 A1D4H C6 O2 DOUB N N 10 A1D4H C6 O3 SING N N 11 A1D4H C1 C8 SING N N 12 A1D4H C8 N2 DOUB Y N 13 A1D4H C8 C13 SING Y N 14 A1D4H C12 C13 SING Y N 15 A1D4H C12 C11 DOUB Y N 16 A1D4H N2 C9 SING Y N 17 A1D4H C13 C10 DOUB Y N 18 A1D4H C11 N4 SING Y N 19 A1D4H C9 N3 DOUB Y N 20 A1D4H C10 N4 SING Y N 21 A1D4H C10 N3 SING Y N 22 A1D4H C11 H12 SING N N 23 A1D4H C12 H13 SING N N 24 A1D4H C2 H2 SING N N 25 A1D4H C3 H3 SING N N 26 A1D4H C3 H4 SING N N 27 A1D4H C4 H6 SING N N 28 A1D4H C4 H5 SING N N 29 A1D4H C5 H7 SING N N 30 A1D4H C7 H8 SING N N 31 A1D4H C7 H9 SING N N 32 A1D4H C9 H10 SING N N 33 A1D4H N1 H1 SING N N 34 A1D4H N4 H11 SING N N 35 A1D4H O3 H14 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D4H SMILES ACDLabs 14.52 "O=C(O)C1CC(CC1)NC(=O)c1ncnc2[NH]ccc12" A1D4H InChI InChI 1.06 "InChI=1S/C13H14N4O3/c18-12(17-8-2-1-7(5-8)13(19)20)10-9-3-4-14-11(9)16-6-15-10/h3-4,6-8H,1-2,5H2,(H,17,18)(H,19,20)(H,14,15,16)/t7-,8+/m1/s1" A1D4H InChIKey InChI 1.06 MGNKBRCPPXSYEB-SFYZADRCSA-N A1D4H SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@H]1CC[C@@H](C1)NC(=O)c2ncnc3[nH]ccc23" A1D4H SMILES CACTVS 3.385 "OC(=O)[CH]1CC[CH](C1)NC(=O)c2ncnc3[nH]ccc23" A1D4H SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N[C@H]3CC[C@H](C3)C(=O)O" A1D4H SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC3CCC(C3)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D4H "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,3S)-3-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]cyclopentane-1-carboxylic acid" A1D4H "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},3~{S})-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylcarbonylamino)cyclopentane-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D4H "Create component" 2026-09-01 RCSB A1D4H "Initial release" 2026-11-04 RCSB #