data_A1D4S # _chem_comp.id A1D4S _chem_comp.name "4-{[(1-hydroxycyclobutyl)methyl]amino}-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H13 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-03 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 243.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D4S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15CF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D4S C11 C1 C 0 1 N N N N N N -44.478 -28.698 0.461 -4.345 0.942 -0.287 C11 A1D4S 1 A1D4S C12 C2 C 0 1 Y N N N N N -47.691 -29.031 5.643 1.825 -0.006 0.012 C12 A1D4S 2 A1D4S C1 C3 C 0 1 N N N N N N -50.070 -28.877 4.672 1.138 -2.510 0.010 C1 A1D4S 3 A1D4S C10 C4 C 0 1 N N N N N N -43.377 -28.359 1.466 -4.927 -0.093 0.689 C10 A1D4S 4 A1D4S C2 C5 C 0 1 Y N N N N N -49.134 -28.924 5.746 2.102 -1.450 0.046 C2 A1D4S 5 A1D4S C3 C6 C 0 1 Y N N N N N -49.452 -28.901 7.073 3.457 -1.580 0.116 C3 A1D4S 6 A1D4S C4 C7 C 0 1 Y N N N N N -47.198 -29.050 6.962 3.076 0.631 0.067 C4 A1D4S 7 A1D4S C5 C8 C 0 1 Y N N N N N -45.071 -29.218 6.310 2.002 2.665 -0.015 C5 A1D4S 8 A1D4S C6 C9 C 0 1 Y N N N N N -46.693 -29.123 4.651 0.669 0.782 -0.052 C6 A1D4S 9 A1D4S C7 C10 C 0 1 N N N N N N -46.131 -29.470 2.270 -1.782 1.040 -0.170 C7 A1D4S 10 A1D4S C8 C11 C 0 1 N N N N N N -45.531 -28.288 1.510 -3.027 0.152 -0.215 C8 A1D4S 11 A1D4S C9 C12 C 0 1 N N N N N N -44.405 -27.542 2.252 -3.487 -0.335 1.169 C9 A1D4S 12 A1D4S N1 N1 N 0 1 N N N N N N -50.847 -28.831 3.807 0.375 -3.350 -0.018 N1 A1D4S 13 A1D4S N2 N2 N 0 1 Y N N N N N -48.285 -28.967 7.798 4.033 -0.348 0.129 N2 A1D4S 14 A1D4S N3 N3 N 0 1 Y N N N N N -45.897 -29.144 7.347 3.112 1.963 0.051 N3 A1D4S 15 A1D4S N4 N4 N 0 1 Y N N N N N -45.375 -29.213 5.014 0.806 2.105 -0.064 N4 A1D4S 16 A1D4S N5 N5 N 0 1 N N N N N N -47.059 -29.095 3.310 -0.584 0.199 -0.102 N5 A1D4S 17 A1D4S O1 O1 O 0 1 N N N N N N -46.619 -27.492 1.035 -2.931 -0.891 -1.186 O1 A1D4S 18 A1D4S H12 H1 H 0 1 N N N N N N -44.473 -28.072 -0.444 -4.811 0.924 -1.272 H12 A1D4S 19 A1D4S H13 H2 H 0 1 N N N N N N -44.516 -29.759 0.173 -4.275 1.946 0.131 H13 A1D4S 20 A1D4S H11 H3 H 0 1 N N N N N N -42.973 -29.226 2.009 -5.575 0.341 1.451 H11 A1D4S 21 A1D4S H10 H4 H 0 1 N N N N N N -42.547 -27.768 1.050 -5.374 -0.956 0.195 H10 A1D4S 22 A1D4S H1 H5 H 0 1 N N N N N N -50.449 -28.841 7.484 3.991 -2.517 0.156 H1 A1D4S 23 A1D4S H3 H6 H 0 1 N N N N N N -44.020 -29.292 6.548 2.070 3.742 -0.026 H3 A1D4S 24 A1D4S H6 H7 H 0 1 N N N N N N -46.661 -30.110 1.549 -1.742 1.657 -1.067 H6 A1D4S 25 A1D4S H5 H8 H 0 1 N N N N N N -45.309 -30.038 2.730 -1.825 1.682 0.710 H5 A1D4S 26 A1D4S H9 H9 H 0 1 N N N N N N -44.386 -27.716 3.338 -3.183 0.320 1.986 H9 A1D4S 27 A1D4S H8 H10 H 0 1 N N N N N N -44.371 -26.461 2.053 -3.261 -1.384 1.360 H8 A1D4S 28 A1D4S H2 H11 H 0 1 N N N N N N -48.235 -28.956 8.797 4.988 -0.185 0.176 H2 A1D4S 29 A1D4S H4 H12 H 0 1 N N N N N N -47.340 -28.156 3.113 -0.670 -0.768 -0.093 H4 A1D4S 30 A1D4S H7 H13 H 0 1 N N N N N N -47.206 -27.296 1.755 -2.105 -1.392 -1.146 H7 A1D4S 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D4S C11 C10 SING N N 1 A1D4S C11 C8 SING N N 2 A1D4S O1 C8 SING N N 3 A1D4S C10 C9 SING N N 4 A1D4S C8 C9 SING N N 5 A1D4S C8 C7 SING N N 6 A1D4S C7 N5 SING N N 7 A1D4S N5 C6 SING N N 8 A1D4S N1 C1 TRIP N N 9 A1D4S C6 N4 DOUB Y N 10 A1D4S C6 C12 SING Y N 11 A1D4S C1 C2 SING N N 12 A1D4S N4 C5 SING Y N 13 A1D4S C12 C2 SING Y N 14 A1D4S C12 C4 DOUB Y N 15 A1D4S C2 C3 DOUB Y N 16 A1D4S C5 N3 DOUB Y N 17 A1D4S C4 N3 SING Y N 18 A1D4S C4 N2 SING Y N 19 A1D4S C3 N2 SING Y N 20 A1D4S C11 H12 SING N N 21 A1D4S C11 H13 SING N N 22 A1D4S C10 H11 SING N N 23 A1D4S C10 H10 SING N N 24 A1D4S C3 H1 SING N N 25 A1D4S C5 H3 SING N N 26 A1D4S C7 H6 SING N N 27 A1D4S C7 H5 SING N N 28 A1D4S C9 H9 SING N N 29 A1D4S C9 H8 SING N N 30 A1D4S N2 H2 SING N N 31 A1D4S N5 H4 SING N N 32 A1D4S O1 H7 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D4S SMILES ACDLabs 14.52 "OC1(CCC1)CNc1ncnc2[NH]cc(C#N)c21" A1D4S InChI InChI 1.06 "InChI=1S/C12H13N5O/c13-4-8-5-14-10-9(8)11(17-7-16-10)15-6-12(18)2-1-3-12/h5,7,18H,1-3,6H2,(H2,14,15,16,17)" A1D4S InChIKey InChI 1.06 PRECUCDKVVGTPB-UHFFFAOYSA-N A1D4S SMILES_CANONICAL CACTVS 3.385 "OC1(CCC1)CNc2ncnc3[nH]cc(C#N)c23" A1D4S SMILES CACTVS 3.385 "OC1(CCC1)CNc2ncnc3[nH]cc(C#N)c23" A1D4S SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(c2c([nH]1)ncnc2NCC3(CCC3)O)C#N" A1D4S SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(c2c([nH]1)ncnc2NCC3(CCC3)O)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D4S "SYSTEMATIC NAME" ACDLabs 14.52 "4-{[(1-hydroxycyclobutyl)methyl]amino}-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" A1D4S "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[(1-oxidanylcyclobutyl)methylamino]-7~{H}-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D4S "Create component" 2026-09-03 RCSB A1D4S "Initial release" 2026-11-04 RCSB #