data_A1D4V # _chem_comp.id A1D4V _chem_comp.name "(3R)-4-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-3-(2-hydroxyethyl)piperazin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 F N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-03 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 329.329 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D4V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15DV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D4V C13 C1 C 0 1 Y N N N N N -46.327 -29.446 4.587 -0.676 -1.200 -0.116 C13 A1D4V 1 A1D4V C16 C2 C 0 1 N N N N N N -43.568 -27.862 0.719 1.297 1.570 1.641 C16 A1D4V 2 A1D4V C15 C3 C 0 1 N N N N N N -42.937 -28.811 1.750 2.077 0.257 1.734 C15 A1D4V 3 A1D4V C11 C4 C 0 1 Y N N N N N -48.523 -29.203 3.100 -1.468 1.270 -0.570 C11 A1D4V 4 A1D4V C12 C5 C 0 1 Y N N N N N -47.721 -29.222 4.269 -1.617 -0.077 -0.251 C12 A1D4V 5 A1D4V C1 C6 C 0 1 N N N N N N -43.566 -31.023 0.699 3.552 0.969 -0.122 C1 A1D4V 6 A1D4V C10 C7 C 0 1 Y N N N N N -49.891 -28.938 3.152 -2.574 2.090 -0.619 C10 A1D4V 7 A1D4V C14 C8 C 0 1 N N R N N N -43.674 -30.158 1.972 2.621 -0.112 0.352 C14 A1D4V 8 A1D4V C2 C9 C 0 1 N N N N N N -46.023 -31.407 0.634 2.612 0.951 -2.393 C2 A1D4V 9 A1D4V C3 C10 C 0 1 N N N N N N -46.196 -30.575 1.909 2.010 -0.389 -1.964 C3 A1D4V 10 A1D4V C4 C11 C 0 1 Y N N N N N -45.110 -29.756 3.914 0.710 -1.342 -0.249 C4 A1D4V 11 A1D4V C5 C12 C 0 1 Y N N N N N -44.026 -29.726 5.963 0.493 -3.575 0.282 C5 A1D4V 12 A1D4V C6 C13 C 0 1 Y N N N N N -46.229 -29.310 5.997 -1.441 -2.325 0.231 C6 A1D4V 13 A1D4V C7 C14 C 0 1 Y N N N N N -48.385 -28.957 5.509 -2.892 -0.598 0.023 C7 A1D4V 14 A1D4V C8 C15 C 0 1 Y N N N N N -49.764 -28.705 5.558 -3.997 0.244 -0.030 C8 A1D4V 15 A1D4V C9 C16 C 0 1 Y N N N N N -50.515 -28.693 4.378 -3.836 1.578 -0.349 C9 A1D4V 16 A1D4V F1 F1 F 0 1 N N N N N N -51.838 -28.446 4.428 -4.915 2.390 -0.400 F1 A1D4V 17 A1D4V N1 N1 N 0 1 N N N N N N -44.662 -31.550 0.149 3.545 1.429 -1.377 N1 A1D4V 18 A1D4V N2 N2 N 0 1 N N N N N N -45.024 -29.942 2.521 1.503 -0.260 -0.588 N2 A1D4V 19 A1D4V N3 N3 N 0 1 Y N N N N N -43.971 -29.895 4.644 1.247 -2.542 -0.042 N3 A1D4V 20 A1D4V N4 N4 N 0 1 Y N N N N N -45.087 -29.441 6.720 -0.813 -3.486 0.414 N4 A1D4V 21 A1D4V N5 N5 N 0 1 Y N N N N N -47.467 -29.021 6.546 -2.759 -1.946 0.308 N5 A1D4V 22 A1D4V O1 O1 O 0 1 N N N N N N -42.464 -31.226 0.200 4.338 1.447 0.668 O1 A1D4V 23 A1D4V O2 O2 O 0 1 N N N N N N -42.861 -26.641 0.679 0.657 1.833 2.891 O2 A1D4V 24 A1D4V H15 H1 H 0 1 N N N N N N -44.614 -27.667 0.998 1.982 2.384 1.405 H15 A1D4V 25 A1D4V H14 H2 H 0 1 N N N N N N -43.536 -28.333 -0.275 0.544 1.490 0.857 H14 A1D4V 26 A1D4V H13 H3 H 0 1 N N N N N N -41.913 -29.038 1.417 2.907 0.376 2.431 H13 A1D4V 27 A1D4V H12 H4 H 0 1 N N N N N N -42.900 -28.284 2.715 1.416 -0.534 2.087 H12 A1D4V 28 A1D4V H10 H5 H 0 1 N N N N N N -48.062 -29.399 2.143 -0.488 1.671 -0.781 H10 A1D4V 29 A1D4V H9 H6 H 0 1 N N N N N N -50.471 -28.922 2.241 -2.460 3.135 -0.866 H9 A1D4V 30 A1D4V H11 H7 H 0 1 N N N N N N -43.100 -30.689 2.746 3.165 -1.054 0.418 H11 A1D4V 31 A1D4V H3 H8 H 0 1 N N N N N N -46.616 -30.932 -0.161 3.139 0.824 -3.338 H3 A1D4V 32 A1D4V H2 H9 H 0 1 N N N N N N -46.417 -32.414 0.833 1.813 1.681 -2.520 H2 A1D4V 33 A1D4V H5 H10 H 0 1 N N N N N N -46.907 -29.770 1.672 1.191 -0.653 -2.633 H5 A1D4V 34 A1D4V H4 H11 H 0 1 N N N N N N -46.634 -31.240 2.668 2.778 -1.162 -2.000 H4 A1D4V 35 A1D4V H6 H12 H 0 1 N N N N N N -43.089 -29.834 6.489 0.966 -4.534 0.438 H6 A1D4V 36 A1D4V H8 H13 H 0 1 N N N N N N -50.246 -28.520 6.507 -4.983 -0.146 0.178 H8 A1D4V 37 A1D4V H1 H14 H 0 1 N N N N N N -44.533 -32.097 -0.678 4.189 2.111 -1.624 H1 A1D4V 38 A1D4V H7 H15 H 0 1 N N N N N N -47.664 -28.883 7.517 -3.493 -2.540 0.531 H7 A1D4V 39 A1D4V H16 H16 H 0 1 N N N N N N -43.261 -26.064 0.039 0.143 2.652 2.905 H16 A1D4V 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D4V N1 C2 SING N N 1 A1D4V N1 C1 SING N N 2 A1D4V O1 C1 DOUB N N 3 A1D4V C2 C3 SING N N 4 A1D4V O2 C16 SING N N 5 A1D4V C1 C14 SING N N 6 A1D4V C16 C15 SING N N 7 A1D4V C15 C14 SING N N 8 A1D4V C3 N2 SING N N 9 A1D4V C14 N2 SING N N 10 A1D4V N2 C4 SING N N 11 A1D4V C11 C10 DOUB Y N 12 A1D4V C11 C12 SING Y N 13 A1D4V C10 C9 SING Y N 14 A1D4V C4 C13 DOUB Y N 15 A1D4V C4 N3 SING Y N 16 A1D4V C12 C13 SING Y N 17 A1D4V C12 C7 DOUB Y N 18 A1D4V C9 F1 SING N N 19 A1D4V C9 C8 DOUB Y N 20 A1D4V C13 C6 SING Y N 21 A1D4V N3 C5 DOUB Y N 22 A1D4V C7 C8 SING Y N 23 A1D4V C7 N5 SING Y N 24 A1D4V C5 N4 SING Y N 25 A1D4V C6 N5 SING Y N 26 A1D4V C6 N4 DOUB Y N 27 A1D4V C16 H15 SING N N 28 A1D4V C16 H14 SING N N 29 A1D4V C15 H13 SING N N 30 A1D4V C15 H12 SING N N 31 A1D4V C11 H10 SING N N 32 A1D4V C10 H9 SING N N 33 A1D4V C14 H11 SING N N 34 A1D4V C2 H3 SING N N 35 A1D4V C2 H2 SING N N 36 A1D4V C3 H5 SING N N 37 A1D4V C3 H4 SING N N 38 A1D4V C5 H6 SING N N 39 A1D4V C8 H8 SING N N 40 A1D4V N1 H1 SING N N 41 A1D4V N5 H7 SING N N 42 A1D4V O2 H16 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D4V SMILES ACDLabs 14.52 "Fc1ccc2c3c(ncnc3[NH]c2c1)N1CCNC(=O)C1CCO" A1D4V InChI InChI 1.06 "InChI=1S/C16H16FN5O2/c17-9-1-2-10-11(7-9)21-14-13(10)15(20-8-19-14)22-5-4-18-16(24)12(22)3-6-23/h1-2,7-8,12,23H,3-6H2,(H,18,24)(H,19,20,21)/t12-/m1/s1" A1D4V InChIKey InChI 1.06 GXJXAXVFNSFEDB-GFCCVEGCSA-N A1D4V SMILES_CANONICAL CACTVS 3.385 "OCC[C@H]1N(CCNC1=O)c2ncnc3[nH]c4cc(F)ccc4c23" A1D4V SMILES CACTVS 3.385 "OCC[CH]1N(CCNC1=O)c2ncnc3[nH]c4cc(F)ccc4c23" A1D4V SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CCNC(=O)[C@H]4CCO" A1D4V SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CCNC(=O)C4CCO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D4V "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-4-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-3-(2-hydroxyethyl)piperazin-2-one" A1D4V "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-4-(7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-3-(2-hydroxyethyl)piperazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D4V "Create component" 2026-09-03 RCSB A1D4V "Initial release" 2026-11-04 RCSB #