data_A1D4Z # _chem_comp.id A1D4Z _chem_comp.name "2-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-2,6-diazaspiro[3.5]nonan-5-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 F N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-03 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.340 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D4Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15EF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D4Z C13 C1 C 0 1 Y N N N N N -49.689 -29.014 3.161 2.829 -2.453 0.202 C13 A1D4Z 1 A1D4Z C17 C2 C 0 1 N N N N N N -43.809 -31.177 2.500 -2.234 0.916 1.066 C17 A1D4Z 2 A1D4Z C16 C3 C 0 1 Y N N N N N -46.231 -29.555 4.806 1.337 1.076 0.181 C16 A1D4Z 3 A1D4Z C15 C4 C 0 1 Y N N N N N -47.596 -29.302 4.411 2.133 -0.160 0.122 C15 A1D4Z 4 A1D4Z C11 C5 C 0 1 Y N N N N N -49.673 -28.633 5.567 4.421 -0.744 -0.371 C11 A1D4Z 5 A1D4Z C12 C6 C 0 1 Y N N N N N -50.352 -28.669 4.344 4.117 -2.073 -0.153 C12 A1D4Z 6 A1D4Z C1 C7 C 0 1 N N N N N N -44.998 -33.456 2.050 -3.960 0.087 -0.610 C1 A1D4Z 7 A1D4Z C10 C8 C 0 1 Y N N N N N -48.309 -28.939 5.596 3.434 0.227 -0.237 C10 A1D4Z 8 A1D4Z C14 C9 C 0 1 Y N N N N N -48.322 -29.328 3.199 1.840 -1.504 0.340 C14 A1D4Z 9 A1D4Z C2 C10 C 0 1 N N N N N N -45.729 -34.108 -0.267 -5.054 -2.094 -0.256 C2 A1D4Z 10 A1D4Z C3 C11 C 0 1 N N N N N N -45.642 -32.642 -0.704 -3.689 -2.581 0.229 C3 A1D4Z 11 A1D4Z C4 C12 C 0 1 N N N N N N -44.582 -31.867 0.082 -3.069 -1.507 1.134 C4 A1D4Z 12 A1D4Z C5 C13 C 0 1 N N N N N N -44.768 -31.980 1.597 -2.809 -0.265 0.284 C5 A1D4Z 13 A1D4Z C6 C14 C 0 1 N N N N N N -45.880 -31.112 2.217 -1.447 -0.263 -0.413 C6 A1D4Z 14 A1D4Z C7 C15 C 0 1 Y N N N N N -45.004 -29.948 4.190 0.001 1.372 0.473 C7 A1D4Z 15 A1D4Z C8 C16 C 0 1 Y N N N N N -44.026 -29.827 6.311 0.457 3.604 0.118 C8 A1D4Z 16 A1D4Z C9 C17 C 0 1 Y N N N N N -46.199 -29.336 6.209 2.207 2.129 -0.146 C9 A1D4Z 17 A1D4Z F1 F1 F 0 1 N N N N N N -51.662 -28.378 4.300 5.080 -3.011 -0.285 F1 A1D4Z 18 A1D4Z N1 N1 N 0 1 N N N N N N -45.428 -34.347 1.140 -4.956 -0.771 -0.859 N1 A1D4Z 19 A1D4Z N2 N2 N 0 1 N N N N N N -44.876 -30.229 2.803 -0.891 0.366 0.800 N2 A1D4Z 20 A1D4Z N3 N3 N 0 1 Y N N N N N -43.918 -30.080 5.005 -0.392 2.643 0.430 N3 A1D4Z 21 A1D4Z N4 N4 N 0 1 Y N N N N N -45.104 -29.462 6.999 1.722 3.370 -0.163 N4 A1D4Z 22 A1D4Z N5 N5 N 0 1 Y N N N N N -47.450 -28.976 6.679 3.452 1.603 -0.391 N5 A1D4Z 23 A1D4Z O1 O1 O 0 1 N N N N N N -44.792 -33.806 3.214 -3.989 1.185 -1.124 O1 A1D4Z 24 A1D4Z H13 H1 H 0 1 N N N N N N -50.226 -29.038 2.224 2.602 -3.496 0.366 H13 A1D4Z 25 A1D4Z H15 H2 H 0 1 N N N N N N -43.444 -31.736 3.375 -2.411 1.880 0.590 H15 A1D4Z 26 A1D4Z H16 H3 H 0 1 N N N N N N -42.955 -30.735 1.965 -2.504 0.912 2.122 H16 A1D4Z 27 A1D4Z H12 H4 H 0 1 N N N N N N -50.195 -28.373 6.476 5.425 -0.458 -0.646 H12 A1D4Z 28 A1D4Z H14 H5 H 0 1 N N N N N N -47.815 -29.595 2.284 0.839 -1.802 0.615 H14 A1D4Z 29 A1D4Z H3 H6 H 0 1 N N N N N N -46.751 -34.463 -0.463 -5.441 -2.796 -0.995 H3 A1D4Z 30 A1D4Z H2 H7 H 0 1 N N N N N N -45.017 -34.688 -0.872 -5.739 -2.052 0.590 H2 A1D4Z 31 A1D4Z H5 H8 H 0 1 N N N N N N -45.387 -32.606 -1.773 -3.811 -3.506 0.793 H5 A1D4Z 32 A1D4Z H4 H9 H 0 1 N N N N N N -46.621 -32.166 -0.544 -3.038 -2.757 -0.627 H4 A1D4Z 33 A1D4Z H6 H10 H 0 1 N N N N N N -43.590 -32.263 -0.181 -3.760 -1.262 1.941 H6 A1D4Z 34 A1D4Z H7 H11 H 0 1 N N N N N N -44.640 -30.806 -0.201 -2.130 -1.872 1.550 H7 A1D4Z 35 A1D4Z H8 H12 H 0 1 N N N N N N -46.530 -30.622 1.477 -1.055 -1.262 -0.604 H8 A1D4Z 36 A1D4Z H9 H13 H 0 1 N N N N N N -46.499 -31.639 2.957 -1.410 0.380 -1.292 H9 A1D4Z 37 A1D4Z H10 H14 H 0 1 N N N N N N -43.117 -29.933 6.885 0.100 4.623 0.094 H10 A1D4Z 38 A1D4Z H1 H15 H 0 1 N N N N N N -45.557 -35.284 1.466 -5.653 -0.497 -1.475 H1 A1D4Z 39 A1D4Z H11 H16 H 0 1 N N N N N N -47.689 -28.778 7.630 4.233 2.122 -0.638 H11 A1D4Z 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D4Z C3 C2 SING N N 1 A1D4Z C3 C4 SING N N 2 A1D4Z C2 N1 SING N N 3 A1D4Z C4 C5 SING N N 4 A1D4Z N1 C1 SING N N 5 A1D4Z C5 C1 SING N N 6 A1D4Z C5 C6 SING N N 7 A1D4Z C5 C17 SING N N 8 A1D4Z C1 O1 DOUB N N 9 A1D4Z C6 N2 SING N N 10 A1D4Z C17 N2 SING N N 11 A1D4Z N2 C7 SING N N 12 A1D4Z C13 C14 DOUB Y N 13 A1D4Z C13 C12 SING Y N 14 A1D4Z C14 C15 SING Y N 15 A1D4Z C7 C16 DOUB Y N 16 A1D4Z C7 N3 SING Y N 17 A1D4Z F1 C12 SING N N 18 A1D4Z C12 C11 DOUB Y N 19 A1D4Z C15 C16 SING Y N 20 A1D4Z C15 C10 DOUB Y N 21 A1D4Z C16 C9 SING Y N 22 A1D4Z N3 C8 DOUB Y N 23 A1D4Z C11 C10 SING Y N 24 A1D4Z C10 N5 SING Y N 25 A1D4Z C9 N5 SING Y N 26 A1D4Z C9 N4 DOUB Y N 27 A1D4Z C8 N4 SING Y N 28 A1D4Z C13 H13 SING N N 29 A1D4Z C17 H15 SING N N 30 A1D4Z C17 H16 SING N N 31 A1D4Z C11 H12 SING N N 32 A1D4Z C14 H14 SING N N 33 A1D4Z C2 H3 SING N N 34 A1D4Z C2 H2 SING N N 35 A1D4Z C3 H5 SING N N 36 A1D4Z C3 H4 SING N N 37 A1D4Z C4 H6 SING N N 38 A1D4Z C4 H7 SING N N 39 A1D4Z C6 H8 SING N N 40 A1D4Z C6 H9 SING N N 41 A1D4Z C8 H10 SING N N 42 A1D4Z N1 H1 SING N N 43 A1D4Z N5 H11 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D4Z SMILES ACDLabs 14.52 "Fc1ccc2c3c([NH]c2c1)ncnc3N1CC2(CCCNC2=O)C1" A1D4Z InChI InChI 1.06 "InChI=1S/C17H16FN5O/c18-10-2-3-11-12(6-10)22-14-13(11)15(21-9-20-14)23-7-17(8-23)4-1-5-19-16(17)24/h2-3,6,9H,1,4-5,7-8H2,(H,19,24)(H,20,21,22)" A1D4Z InChIKey InChI 1.06 LYJSRMGJLXXHJA-UHFFFAOYSA-N A1D4Z SMILES_CANONICAL CACTVS 3.385 "Fc1ccc2c([nH]c3ncnc(N4CC5(CCCNC5=O)C4)c23)c1" A1D4Z SMILES CACTVS 3.385 "Fc1ccc2c([nH]c3ncnc(N4CC5(CCCNC5=O)C4)c23)c1" A1D4Z SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CC5(C4)CCCNC5=O" A1D4Z SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CC5(C4)CCCNC5=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1D4Z "SYSTEMATIC NAME" ACDLabs 14.52 "2-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-2,6-diazaspiro[3.5]nonan-5-one" A1D4Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-(7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-2,6-diazaspiro[3.5]nonan-5-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D4Z "Create component" 2026-09-03 RCSB A1D4Z "Initial release" 2026-11-04 RCSB #