data_A1D50 # _chem_comp.id A1D50 _chem_comp.name "~{N}-[(1~{S},2~{R})-2-[(4-bromanyl-2-morpholin-4-ylcarbonyl-6-nitro-phenyl)amino]cyclohexyl]-2-oxidanylidene-1~{H}-quinoline-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H28 Br N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-04 _chem_comp.pdbx_modified_date 2025-02-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 598.445 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D50 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Y44 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D50 N1 N1 N 0 1 N N N N N N 16.622 -5.953 10.972 6.252 1.102 -1.922 N1 A1D50 1 A1D50 N3 N2 N 0 1 N N N N N N 21.859 -4.129 15.239 -0.389 -0.739 0.042 N3 A1D50 2 A1D50 C4 C1 C 0 1 N N N N N N 19.336 -5.494 11.149 4.407 -0.042 -0.114 C4 A1D50 3 A1D50 C5 C2 C 0 1 Y N N N N N 18.859 -6.810 10.897 5.687 -0.700 -0.417 C5 A1D50 4 A1D50 C6 C3 C 0 1 Y N N N N N 19.717 -7.909 10.715 6.025 -1.915 0.186 C6 A1D50 5 A1D50 C7 C4 C 0 1 Y N N N N N 19.213 -9.150 10.450 7.219 -2.511 -0.108 C7 A1D50 6 A1D50 C8 C5 C 0 1 Y N N N N N 17.838 -9.345 10.361 8.092 -1.929 -1.018 C8 A1D50 7 A1D50 C10 C6 C 0 1 N N N N N N 20.807 -5.204 11.309 3.447 -0.654 0.838 C10 A1D50 8 A1D50 C13 C7 C 0 1 N N N N N N 24.724 -3.491 12.928 1.329 1.156 3.461 C13 A1D50 9 A1D50 C15 C8 C 0 1 N N N N N N 24.178 -4.933 14.891 -0.311 1.167 1.577 C15 A1D50 10 A1D50 C17 C9 C 0 1 Y N N N N N 21.416 -4.445 16.492 -1.745 -0.873 -0.228 C17 A1D50 11 A1D50 C20 C10 C 0 1 Y N N N N N 20.596 -5.104 19.057 -4.457 -1.143 -0.766 C20 A1D50 12 A1D50 C21 C11 C 0 1 Y N N N N N 20.093 -5.806 18.002 -3.828 0.052 -1.041 C21 A1D50 13 A1D50 C22 C12 C 0 1 Y N N N N N 20.507 -5.505 16.701 -2.465 0.200 -0.774 C22 A1D50 14 A1D50 C24 C13 C 0 1 N N N N N N 19.592 -8.265 14.237 -1.688 3.926 -0.939 C24 A1D50 15 A1D50 C26 C14 C 0 1 N N N N N N 21.422 -9.571 15.732 -3.057 3.478 1.577 C26 A1D50 16 A1D50 C1 C15 C 0 1 Y N N N N N 17.471 -7.027 10.803 6.575 -0.099 -1.327 C1 A1D50 17 A1D50 C11 C16 C 0 1 N N S N N N 22.587 -4.820 12.951 1.242 -0.767 1.868 C11 A1D50 18 A1D50 C12 C17 C 0 1 N N N N N N 23.280 -3.561 12.442 1.474 -0.361 3.325 C12 A1D50 19 A1D50 C14 C18 C 0 1 N N N N N N 24.787 -3.617 14.430 -0.079 1.573 3.033 C14 A1D50 20 A1D50 C16 C19 C 0 1 N N R N N N 22.718 -5.018 14.461 -0.166 -0.350 1.441 C16 A1D50 21 A1D50 C18 C20 C 0 1 Y N N N N N 21.912 -3.747 17.613 -2.394 -2.073 0.037 C18 A1D50 22 A1D50 C19 C21 C 0 1 Y N N N N N 21.494 -4.076 18.896 -3.741 -2.204 -0.232 C19 A1D50 23 A1D50 C2 C22 C 0 1 N N N N N N 17.021 -4.684 11.230 5.092 1.726 -1.652 C2 A1D50 24 A1D50 C23 C23 C 0 1 N N N N N N 19.899 -6.267 15.556 -1.786 1.477 -1.065 C23 A1D50 25 A1D50 C25 C24 C 0 1 N N N N N N 19.414 -9.740 14.501 -1.406 4.712 0.347 C25 A1D50 26 A1D50 C27 C25 C 0 1 N N N N N N 20.605 -8.523 16.449 -3.424 2.629 0.355 C27 A1D50 27 A1D50 C3 C26 C 0 1 N N N N N N 18.445 -4.472 11.338 4.126 1.149 -0.719 C3 A1D50 28 A1D50 C9 C27 C 0 1 Y N N N N N 16.964 -8.301 10.533 7.782 -0.729 -1.620 C9 A1D50 29 A1D50 N2 N3 N 0 1 N N N N N N 21.186 -4.871 12.545 2.230 -0.104 1.013 N2 A1D50 30 A1D50 N4 N4 N 1 1 N N N N N N 22.842 -2.649 17.485 -1.640 -3.212 0.607 N4 A1D50 31 A1D50 N5 N5 N 0 1 N N N N N N 20.035 -7.596 15.463 -2.279 2.629 -0.570 N5 A1D50 32 A1D50 O1 O1 O 0 1 N N N N N N 16.181 -3.771 11.386 4.842 2.789 -2.193 O1 A1D50 33 A1D50 O2 O2 O 0 1 N N N N N N 21.599 -5.286 10.374 3.759 -1.651 1.459 O2 A1D50 34 A1D50 O3 O3 O 0 1 N N N N N N 19.298 -5.625 14.703 -0.782 1.489 -1.750 O3 A1D50 35 A1D50 O4 O4 O 0 1 N N N N N N 20.641 -10.375 14.847 -2.595 4.759 1.140 O4 A1D50 36 A1D50 O5 O5 O 0 1 N N N N N N 23.351 -2.205 18.506 -2.187 -4.289 0.760 O5 A1D50 37 A1D50 O6 O6 O -1 1 N N N N N N 23.006 -2.154 16.380 -0.472 -3.071 0.923 O6 A1D50 38 A1D50 BR1 BR1 BR 0 0 N N N N N N 20.047 -5.544 20.823 -6.302 -1.341 -1.128 BR1 A1D50 39 A1D50 H1 H1 H 0 1 N N N N N N 15.639 -6.124 10.899 6.876 1.507 -2.545 H1 A1D50 40 A1D50 H2 H2 H 0 1 N N N N N N 22.361 -3.269 15.331 0.042 -0.081 -0.590 H2 A1D50 41 A1D50 H3 H3 H 0 1 N N N N N N 20.786 -7.770 10.786 5.345 -2.382 0.883 H3 A1D50 42 A1D50 H4 H4 H 0 1 N N N N N N 19.884 -9.984 10.309 7.479 -3.449 0.359 H4 A1D50 43 A1D50 H5 H5 H 0 1 N N N N N N 17.453 -10.332 10.154 9.033 -2.411 -1.240 H5 A1D50 44 A1D50 H6 H6 H 0 1 N N N N N N 25.299 -4.311 12.472 1.494 1.445 4.499 H6 A1D50 45 A1D50 H7 H7 H 0 1 N N N N N N 25.160 -2.527 12.628 2.063 1.649 2.825 H7 A1D50 46 A1D50 H8 H8 H 0 1 N N N N N N 24.737 -5.768 14.444 -1.315 1.465 1.272 H8 A1D50 47 A1D50 H9 H9 H 0 1 N N N N N N 24.238 -4.996 15.988 0.423 1.661 0.940 H9 A1D50 48 A1D50 H10 H10 H 0 1 N N N N N N 19.375 -6.595 18.171 -4.389 0.874 -1.461 H10 A1D50 49 A1D50 H11 H11 H 0 1 N N N N N N 20.346 -8.123 13.449 -2.386 4.483 -1.564 H11 A1D50 50 A1D50 H12 H12 H 0 1 N N N N N N 18.634 -7.833 13.910 -0.757 3.764 -1.481 H12 A1D50 51 A1D50 H13 H13 H 0 1 N N N N N N 21.888 -10.226 16.482 -3.937 3.605 2.209 H13 A1D50 52 A1D50 H14 H14 H 0 1 N N N N N N 22.206 -9.066 15.148 -2.271 2.981 2.144 H14 A1D50 53 A1D50 H15 H15 H 0 1 N N N N N N 23.097 -5.672 12.478 1.346 -1.848 1.771 H15 A1D50 54 A1D50 H16 H16 H 0 1 N N N N N N 22.735 -2.679 12.808 2.477 -0.659 3.630 H16 A1D50 55 A1D50 H17 H17 H 0 1 N N N N N N 23.272 -3.567 11.342 0.740 -0.855 3.961 H17 A1D50 56 A1D50 H18 H18 H 0 1 N N N N N N 25.838 -3.575 14.751 -0.814 1.079 3.670 H18 A1D50 57 A1D50 H19 H19 H 0 1 N N N N N N 24.231 -2.784 14.885 -0.183 2.654 3.130 H19 A1D50 58 A1D50 H20 H20 H 0 1 N N N N N N 22.392 -6.048 14.668 -0.900 -0.844 2.077 H20 A1D50 59 A1D50 H21 H21 H 0 1 N N N N N N 21.868 -3.534 19.752 -4.241 -3.139 -0.025 H21 A1D50 60 A1D50 H22 H22 H 0 1 N N N N N N 18.702 -9.868 15.330 -0.613 4.219 0.909 H22 A1D50 61 A1D50 H23 H23 H 0 1 N N N N N N 19.011 -10.216 13.595 -1.098 5.726 0.093 H23 A1D50 62 A1D50 H24 H24 H 0 1 N N N N N N 21.250 -7.968 17.146 -3.641 1.608 0.669 H24 A1D50 63 A1D50 H25 H25 H 0 1 N N N N N N 19.793 -9.009 17.009 -4.296 3.055 -0.140 H25 A1D50 64 A1D50 H26 H26 H 0 1 N N N N N N 18.816 -3.485 11.573 3.194 1.656 -0.517 H26 A1D50 65 A1D50 H27 H27 H 0 1 N N N N N N 15.898 -8.462 10.461 8.473 -0.278 -2.317 H27 A1D50 66 A1D50 H28 H28 H 0 1 N N N N N N 20.482 -4.648 13.219 2.007 0.732 0.574 H28 A1D50 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D50 C8 C7 DOUB Y N 1 A1D50 C8 C9 SING Y N 2 A1D50 O2 C10 DOUB N N 3 A1D50 C7 C6 SING Y N 4 A1D50 C9 C1 DOUB Y N 5 A1D50 C6 C5 DOUB Y N 6 A1D50 C1 C5 SING Y N 7 A1D50 C1 N1 SING N N 8 A1D50 C5 C4 SING N N 9 A1D50 N1 C2 SING N N 10 A1D50 C4 C10 SING N N 11 A1D50 C4 C3 DOUB N N 12 A1D50 C2 C3 SING N N 13 A1D50 C2 O1 DOUB N N 14 A1D50 C10 N2 SING N N 15 A1D50 C12 C13 SING N N 16 A1D50 C12 C11 SING N N 17 A1D50 N2 C11 SING N N 18 A1D50 C13 C14 SING N N 19 A1D50 C11 C16 SING N N 20 A1D50 C24 C25 SING N N 21 A1D50 C24 N5 SING N N 22 A1D50 C14 C15 SING N N 23 A1D50 C16 C15 SING N N 24 A1D50 C16 N3 SING N N 25 A1D50 C25 O4 SING N N 26 A1D50 O3 C23 DOUB N N 27 A1D50 O4 C26 SING N N 28 A1D50 N3 C17 SING N N 29 A1D50 N5 C23 SING N N 30 A1D50 N5 C27 SING N N 31 A1D50 C23 C22 SING N N 32 A1D50 C26 C27 SING N N 33 A1D50 O6 N4 SING N N 34 A1D50 C17 C22 DOUB Y N 35 A1D50 C17 C18 SING Y N 36 A1D50 C22 C21 SING Y N 37 A1D50 N4 C18 SING N N 38 A1D50 N4 O5 DOUB N N 39 A1D50 C18 C19 DOUB Y N 40 A1D50 C21 C20 DOUB Y N 41 A1D50 C19 C20 SING Y N 42 A1D50 C20 BR1 SING N N 43 A1D50 N1 H1 SING N N 44 A1D50 N3 H2 SING N N 45 A1D50 C6 H3 SING N N 46 A1D50 C7 H4 SING N N 47 A1D50 C8 H5 SING N N 48 A1D50 C13 H6 SING N N 49 A1D50 C13 H7 SING N N 50 A1D50 C15 H8 SING N N 51 A1D50 C15 H9 SING N N 52 A1D50 C21 H10 SING N N 53 A1D50 C24 H11 SING N N 54 A1D50 C24 H12 SING N N 55 A1D50 C26 H13 SING N N 56 A1D50 C26 H14 SING N N 57 A1D50 C11 H15 SING N N 58 A1D50 C12 H16 SING N N 59 A1D50 C12 H17 SING N N 60 A1D50 C14 H18 SING N N 61 A1D50 C14 H19 SING N N 62 A1D50 C16 H20 SING N N 63 A1D50 C19 H21 SING N N 64 A1D50 C25 H22 SING N N 65 A1D50 C25 H23 SING N N 66 A1D50 C27 H24 SING N N 67 A1D50 C27 H25 SING N N 68 A1D50 C3 H26 SING N N 69 A1D50 C9 H27 SING N N 70 A1D50 N2 H28 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D50 InChI InChI 1.06 "InChI=1S/C27H28BrN5O6/c28-16-13-19(27(36)32-9-11-39-12-10-32)25(23(14-16)33(37)38)30-21-7-3-4-8-22(21)31-26(35)18-15-24(34)29-20-6-2-1-5-17(18)20/h1-2,5-6,13-15,21-22,30H,3-4,7-12H2,(H,29,34)(H,31,35)/t21-,22+/m1/s1" A1D50 InChIKey InChI 1.06 KFFVXVXATZDEKJ-YADHBBJMSA-N A1D50 SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1cc(Br)cc(C(=O)N2CCOCC2)c1N[C@@H]3CCCC[C@@H]3NC(=O)C4=CC(=O)Nc5ccccc45" A1D50 SMILES CACTVS 3.385 "[O-][N+](=O)c1cc(Br)cc(C(=O)N2CCOCC2)c1N[CH]3CCCC[CH]3NC(=O)C4=CC(=O)Nc5ccccc45" A1D50 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=CC(=O)N2)C(=O)N[C@H]3CCCC[C@H]3Nc4c(cc(cc4[N+](=O)[O-])Br)C(=O)N5CCOCC5" A1D50 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=CC(=O)N2)C(=O)NC3CCCCC3Nc4c(cc(cc4[N+](=O)[O-])Br)C(=O)N5CCOCC5" # _pdbx_chem_comp_identifier.comp_id A1D50 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{S},2~{R})-2-[(4-bromanyl-2-morpholin-4-ylcarbonyl-6-nitro-phenyl)amino]cyclohexyl]-2-oxidanylidene-1~{H}-quinoline-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D50 "Create component" 2024-02-04 PDBC A1D50 "Initial release" 2025-02-12 RCSB #