data_A1D51 # _chem_comp.id A1D51 _chem_comp.name "~{N}-[(1~{S},2~{R})-2-[[4-cyclopropyl-2-(methylcarbamoyl)-6-nitro-phenyl]amino]cyclohexyl]-2-oxidanylidene-1~{H}-quinoline-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H29 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-04 _chem_comp.pdbx_modified_date 2025-02-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.550 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D51 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Y42 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D51 N1 N1 N 0 1 N N N N N N -4.990 8.757 46.990 5.592 2.071 -0.876 N1 A1D51 1 A1D51 N3 N2 N 0 1 N N N N N N -7.678 10.986 40.929 -1.173 -0.132 -0.050 N3 A1D51 2 A1D51 C4 C1 C 0 1 Y N N N N N -7.229 9.537 46.650 4.896 -0.226 -0.613 C4 A1D51 3 A1D51 C5 C2 C 0 1 Y N N N N N -8.597 9.405 46.942 5.146 -1.588 -0.804 C5 A1D51 4 A1D51 C6 C3 C 0 1 Y N N N N N -9.045 8.441 47.795 6.295 -1.988 -1.424 C6 A1D51 5 A1D51 C7 C4 C 0 1 N N N N N N -4.442 9.680 46.161 4.471 2.507 -0.275 C7 A1D51 6 A1D51 C8 C5 C 0 1 N N N N N N -5.363 10.594 45.522 3.462 1.567 0.207 C8 A1D51 7 A1D51 C10 C6 C 0 1 N N N N N N -7.641 11.520 45.083 2.654 -0.753 0.521 C10 A1D51 8 A1D51 C13 C7 C 0 1 N N N N N N -9.376 14.240 41.682 0.653 -0.609 3.780 C13 A1D51 9 A1D51 C15 C8 C 0 1 N N N N N N -9.963 11.943 40.844 -0.969 0.568 2.288 C15 A1D51 10 A1D51 C17 C9 C 0 1 Y N N N N N -7.592 9.888 40.110 -2.531 0.036 -0.287 C17 A1D51 11 A1D51 C20 C10 C 0 1 Y N N N N N -7.416 7.662 38.390 -5.250 0.373 -0.747 C20 A1D51 12 A1D51 C21 C11 C 0 1 Y N N N N N -7.532 7.489 39.764 -4.705 -0.891 -0.809 C21 A1D51 13 A1D51 C22 C12 C 0 1 Y N N N N N -7.603 8.576 40.629 -3.341 -1.074 -0.573 C22 A1D51 14 A1D51 C24 C13 C 0 1 N N N N N N -6.610 5.235 37.861 -7.310 1.954 -0.724 C24 A1D51 15 A1D51 C26 C14 C 0 1 N N N N N N -7.708 8.319 42.101 -2.754 -2.426 -0.626 C26 A1D51 16 A1D51 C1 C15 C 0 1 Y N N N N N -8.139 7.561 48.394 7.220 -1.052 -1.868 C1 A1D51 17 A1D51 C11 C16 C 0 1 N N S N N N -8.557 12.223 42.919 0.439 -1.288 1.385 C11 A1D51 18 A1D51 C12 C17 C 0 1 N N N N N N -8.241 13.655 42.512 0.690 -1.790 2.809 C12 A1D51 19 A1D51 C14 C18 C 0 1 N N N N N N -9.633 13.382 40.458 -0.718 0.066 3.711 C14 A1D51 20 A1D51 C16 C19 C 0 1 N N R N N N -8.864 11.335 41.708 -0.932 -0.614 1.316 C16 A1D51 21 A1D51 C18 C20 C 0 1 Y N N N N N -7.474 10.058 38.711 -3.097 1.304 -0.235 C18 A1D51 22 A1D51 C19 C21 C 0 1 Y N N N N N -7.392 8.949 37.872 -4.448 1.468 -0.464 C19 A1D51 23 A1D51 C2 C22 C 0 1 Y N N N N N -6.797 7.653 48.139 6.994 0.296 -1.691 C2 A1D51 24 A1D51 C23 C23 C 0 1 N N N N N N -7.329 6.483 37.485 -6.722 0.569 -1.002 C23 A1D51 25 A1D51 C25 C24 C 0 1 N N N N N N -8.076 5.227 37.752 -7.123 1.478 -2.167 C25 A1D51 26 A1D51 C27 C25 C 0 1 N N N N N N -8.638 6.993 43.906 -2.931 -4.820 -1.043 C27 A1D51 27 A1D51 C3 C26 C 0 1 Y N N N N N -6.336 8.642 47.265 5.830 0.726 -1.061 C3 A1D51 28 A1D51 C9 C27 C 0 1 N N N N N N -6.714 10.544 45.773 3.660 0.226 0.043 C9 A1D51 29 A1D51 N2 N3 N 0 1 N N N N N N -7.507 11.652 43.753 1.477 -0.322 1.018 N2 A1D51 30 A1D51 N4 N4 N 0 1 N N N N N N -8.446 7.286 42.498 -3.514 -3.477 -0.992 N4 A1D51 31 A1D51 N5 N5 N 1 1 N N N N N N -7.432 11.375 38.099 -2.250 2.480 0.067 N5 A1D51 32 A1D51 O1 O1 O 0 1 N N N N N N -3.205 9.700 45.974 4.295 3.704 -0.129 O1 A1D51 33 A1D51 O2 O2 O 0 1 N N N N N N -8.480 12.156 45.721 2.889 -1.943 0.463 O2 A1D51 34 A1D51 O3 O3 O 0 1 N N N N N N -7.089 9.011 42.903 -1.584 -2.592 -0.339 O3 A1D51 35 A1D51 O4 O4 O -1 1 N N N N N N -7.477 11.452 36.884 -1.043 2.353 0.159 O4 A1D51 36 A1D51 O5 O5 O 0 1 N N N N N N -7.303 12.343 38.821 -2.762 3.574 0.223 O5 A1D51 37 A1D51 H1 H1 H 0 1 N N N N N N -4.371 8.111 47.436 6.245 2.717 -1.190 H1 A1D51 38 A1D51 H2 H2 H 0 1 N N N N N N -6.937 10.887 41.593 -0.762 -0.753 -0.730 H2 A1D51 39 A1D51 H3 H3 H 0 1 N N N N N N -9.305 10.079 46.483 4.432 -2.322 -0.461 H3 A1D51 40 A1D51 H4 H4 H 0 1 N N N N N N -10.100 8.357 48.008 6.487 -3.041 -1.570 H4 A1D51 41 A1D51 H5 H5 H 0 1 N N N N N N -4.981 11.332 44.832 2.566 1.930 0.689 H5 A1D51 42 A1D51 H6 H6 H 0 1 N N N N N N -9.104 15.256 41.361 0.832 -0.966 4.794 H6 A1D51 43 A1D51 H7 H7 H 0 1 N N N N N N -10.289 14.281 42.294 1.426 0.110 3.507 H7 A1D51 44 A1D51 H8 H8 H 0 1 N N N N N N -10.909 11.931 41.406 -1.946 1.048 2.239 H8 A1D51 45 A1D51 H9 H9 H 0 1 N N N N N N -10.073 11.343 39.929 -0.197 1.287 2.015 H9 A1D51 46 A1D51 H10 H10 H 0 1 N N N N N N -7.568 6.489 40.169 -5.335 -1.740 -1.030 H10 A1D51 47 A1D51 H11 H11 H 0 1 N N N N N N -6.001 4.706 37.114 -8.327 2.000 -0.337 H11 A1D51 48 A1D51 H12 H12 H 0 1 N N N N N N -6.132 5.153 38.848 -6.631 2.724 -0.357 H12 A1D51 49 A1D51 H13 H13 H 0 1 N N N N N N -8.502 6.798 49.067 8.124 -1.384 -2.357 H13 A1D51 50 A1D51 H14 H14 H 0 1 N N N N N N -9.476 12.260 43.523 0.465 -2.130 0.693 H14 A1D51 51 A1D51 H15 H15 H 0 1 N N N N N N -7.316 13.666 41.917 1.667 -2.271 2.857 H15 A1D51 52 A1D51 H16 H16 H 0 1 N N N N N N -8.103 14.266 43.416 -0.082 -2.509 3.082 H16 A1D51 53 A1D51 H17 H17 H 0 1 N N N N N N -8.734 13.385 39.824 -1.491 -0.653 3.984 H17 A1D51 54 A1D51 H18 H18 H 0 1 N N N N N N -10.479 13.805 39.896 -0.744 0.907 4.403 H18 A1D51 55 A1D51 H19 H19 H 0 1 N N N N N N -9.272 10.396 42.111 -1.705 -1.333 1.589 H19 A1D51 56 A1D51 H20 H20 H 0 1 N N N N N N -7.309 9.093 36.805 -4.884 2.455 -0.418 H20 A1D51 57 A1D51 H21 H21 H 0 1 N N N N N N -6.103 6.970 48.607 7.719 1.016 -2.040 H21 A1D51 58 A1D51 H22 H22 H 0 1 N N N N N N -7.251 6.741 36.419 -7.353 -0.296 -0.798 H22 A1D51 59 A1D51 H23 H23 H 0 1 N N N N N N -8.693 5.138 38.658 -8.019 1.211 -2.728 H23 A1D51 60 A1D51 H24 H24 H 0 1 N N N N N N -8.562 4.691 36.923 -6.322 1.934 -2.748 H24 A1D51 61 A1D51 H25 H25 H 0 1 N N N N N N -9.277 6.104 44.012 -2.107 -4.831 -1.756 H25 A1D51 62 A1D51 H26 H26 H 0 1 N N N N N N -7.662 6.802 44.377 -2.561 -5.094 -0.056 H26 A1D51 63 A1D51 H27 H27 H 0 1 N N N N N N -9.120 7.851 44.397 -3.692 -5.534 -1.357 H27 A1D51 64 A1D51 H28 H28 H 0 1 N N N N N N -6.658 11.348 43.320 1.318 0.628 1.133 H28 A1D51 65 A1D51 H29 H29 H 0 1 N N N N N N -8.877 6.700 41.812 -4.447 -3.344 -1.220 H29 A1D51 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D51 O4 N5 SING N N 1 A1D51 C23 C25 SING N N 2 A1D51 C23 C24 SING N N 3 A1D51 C23 C20 SING N N 4 A1D51 C25 C24 SING N N 5 A1D51 C19 C20 DOUB Y N 6 A1D51 C19 C18 SING Y N 7 A1D51 N5 C18 SING N N 8 A1D51 N5 O5 DOUB N N 9 A1D51 C20 C21 SING Y N 10 A1D51 C18 C17 DOUB Y N 11 A1D51 C21 C22 DOUB Y N 12 A1D51 C17 C22 SING Y N 13 A1D51 C17 N3 SING N N 14 A1D51 C14 C15 SING N N 15 A1D51 C14 C13 SING N N 16 A1D51 C22 C26 SING N N 17 A1D51 C15 C16 SING N N 18 A1D51 N3 C16 SING N N 19 A1D51 C13 C12 SING N N 20 A1D51 C16 C11 SING N N 21 A1D51 C26 N4 SING N N 22 A1D51 C26 O3 DOUB N N 23 A1D51 N4 C27 SING N N 24 A1D51 C12 C11 SING N N 25 A1D51 C11 N2 SING N N 26 A1D51 N2 C10 SING N N 27 A1D51 C10 O2 DOUB N N 28 A1D51 C10 C9 SING N N 29 A1D51 C8 C9 DOUB N N 30 A1D51 C8 C7 SING N N 31 A1D51 C9 C4 SING N N 32 A1D51 O1 C7 DOUB N N 33 A1D51 C7 N1 SING N N 34 A1D51 C4 C5 DOUB Y N 35 A1D51 C4 C3 SING Y N 36 A1D51 C5 C6 SING Y N 37 A1D51 N1 C3 SING N N 38 A1D51 C3 C2 DOUB Y N 39 A1D51 C6 C1 DOUB Y N 40 A1D51 C2 C1 SING Y N 41 A1D51 N1 H1 SING N N 42 A1D51 N3 H2 SING N N 43 A1D51 C5 H3 SING N N 44 A1D51 C6 H4 SING N N 45 A1D51 C8 H5 SING N N 46 A1D51 C13 H6 SING N N 47 A1D51 C13 H7 SING N N 48 A1D51 C15 H8 SING N N 49 A1D51 C15 H9 SING N N 50 A1D51 C21 H10 SING N N 51 A1D51 C24 H11 SING N N 52 A1D51 C24 H12 SING N N 53 A1D51 C1 H13 SING N N 54 A1D51 C11 H14 SING N N 55 A1D51 C12 H15 SING N N 56 A1D51 C12 H16 SING N N 57 A1D51 C14 H17 SING N N 58 A1D51 C14 H18 SING N N 59 A1D51 C16 H19 SING N N 60 A1D51 C19 H20 SING N N 61 A1D51 C2 H21 SING N N 62 A1D51 C23 H22 SING N N 63 A1D51 C25 H23 SING N N 64 A1D51 C25 H24 SING N N 65 A1D51 C27 H25 SING N N 66 A1D51 C27 H26 SING N N 67 A1D51 C27 H27 SING N N 68 A1D51 N2 H28 SING N N 69 A1D51 N4 H29 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D51 InChI InChI 1.06 "InChI=1S/C27H29N5O5/c1-28-26(34)19-12-16(15-10-11-15)13-23(32(36)37)25(19)30-21-8-4-5-9-22(21)31-27(35)18-14-24(33)29-20-7-3-2-6-17(18)20/h2-3,6-7,12-15,21-22,30H,4-5,8-11H2,1H3,(H,28,34)(H,29,33)(H,31,35)/t21-,22+/m1/s1" A1D51 InChIKey InChI 1.06 MVXGEYVENMHUPC-YADHBBJMSA-N A1D51 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1cc(cc(c1N[C@@H]2CCCC[C@@H]2NC(=O)C3=CC(=O)Nc4ccccc34)[N+]([O-])=O)C5CC5" A1D51 SMILES CACTVS 3.385 "CNC(=O)c1cc(cc(c1N[CH]2CCCC[CH]2NC(=O)C3=CC(=O)Nc4ccccc34)[N+]([O-])=O)C5CC5" A1D51 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1cc(cc(c1N[C@@H]2CCCC[C@@H]2NC(=O)C3=CC(=O)Nc4c3cccc4)[N+](=O)[O-])C5CC5" A1D51 SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1cc(cc(c1NC2CCCCC2NC(=O)C3=CC(=O)Nc4c3cccc4)[N+](=O)[O-])C5CC5" # _pdbx_chem_comp_identifier.comp_id A1D51 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{S},2~{R})-2-[[4-cyclopropyl-2-(methylcarbamoyl)-6-nitro-phenyl]amino]cyclohexyl]-2-oxidanylidene-1~{H}-quinoline-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D51 "Create component" 2024-02-04 PDBC A1D51 "Initial release" 2025-02-12 RCSB #