data_A1D59 # _chem_comp.id A1D59 _chem_comp.name "(~{E})-~{N}-[4-[2-(4-oxidanylpiperidin-1-yl)pyridin-4-yl]pyridin-2-yl]-3-phenyl-prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H24 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-16 _chem_comp.pdbx_modified_date 2024-07-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D59 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Y7L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D59 O01 O1 O 0 1 N N N N N N 6.535 28.208 47.763 3.765 -1.793 0.292 O01 A1D59 1 A1D59 C02 C1 C 0 1 N N N N N N 5.494 28.081 47.236 3.866 -0.583 0.214 C02 A1D59 2 A1D59 C03 C2 C 0 1 N N N N N N 5.120 26.699 46.738 5.185 0.032 0.057 C03 A1D59 3 A1D59 C04 C3 C 0 1 N N N N N N 6.058 25.774 46.641 6.288 -0.742 -0.002 C04 A1D59 4 A1D59 C05 C4 C 0 1 Y N N N N N 5.721 24.365 46.145 7.614 -0.123 -0.161 C05 A1D59 5 A1D59 C06 C5 C 0 1 Y N N N N N 4.538 24.083 45.401 7.735 1.268 -0.245 C06 A1D59 6 A1D59 C07 C6 C 0 1 Y N N N N N 4.243 22.796 44.925 8.981 1.840 -0.393 C07 A1D59 7 A1D59 C08 C7 C 0 1 Y N N N N N 5.168 21.803 45.243 10.109 1.041 -0.459 C08 A1D59 8 A1D59 C09 C8 C 0 1 Y N N N N N 6.305 22.066 45.993 9.998 -0.336 -0.377 C09 A1D59 9 A1D59 C10 C9 C 0 1 Y N N N N N 6.573 23.336 46.440 8.759 -0.922 -0.223 C10 A1D59 10 A1D59 N11 N1 N 0 1 N N N N N N 4.622 29.237 47.081 2.764 0.191 0.268 N11 A1D59 11 A1D59 C12 C10 C 0 1 Y N N N N N 3.314 29.089 46.463 1.502 -0.397 0.305 C12 A1D59 12 A1D59 N13 N2 N 0 1 Y N N N N N 3.044 29.701 45.327 1.395 -1.714 0.396 N13 A1D59 13 A1D59 C14 C11 C 0 1 Y N N N N N 1.850 29.557 44.788 0.222 -2.318 0.435 C14 A1D59 14 A1D59 C15 C12 C 0 1 Y N N N N N 0.857 28.757 45.360 -0.950 -1.594 0.382 C15 A1D59 15 A1D59 C16 C13 C 0 1 Y N N N N N 1.105 28.090 46.559 -0.888 -0.200 0.286 C16 A1D59 16 A1D59 C17 C14 C 0 1 Y N N N N N 0.032 27.225 47.240 -2.127 0.616 0.226 C17 A1D59 17 A1D59 C18 C15 C 0 1 Y N N N N N -1.152 26.895 46.572 -3.383 0.012 0.271 C18 A1D59 18 A1D59 C19 C16 C 0 1 Y N N N N N -2.088 26.115 47.262 -4.516 0.814 0.213 C19 A1D59 19 A1D59 N20 N3 N 0 1 N N N N N N -3.367 25.724 46.656 -5.776 0.228 0.257 N20 A1D59 20 A1D59 C21 C17 C 0 1 N N N N N N -3.792 26.279 45.281 -5.928 -0.774 -0.807 C21 A1D59 21 A1D59 C22 C18 C 0 1 N N N N N N -5.308 26.249 45.024 -7.265 -1.499 -0.640 C22 A1D59 22 A1D59 C23 C19 C 0 1 N N N N N N -6.000 25.097 45.598 -8.405 -0.479 -0.707 C23 A1D59 23 A1D59 O24 O2 O 0 1 N N N N N N -5.609 23.897 44.956 -9.653 -1.142 -0.496 O24 A1D59 24 A1D59 C25 C20 C 0 1 N N N N N N -5.799 24.963 47.037 -8.197 0.580 0.380 C25 A1D59 25 A1D59 C26 C21 C 0 1 N N N N N N -4.611 25.761 47.573 -6.833 1.245 0.183 C26 A1D59 26 A1D59 N27 N4 N 0 1 Y N N N N N -1.856 25.712 48.521 -4.410 2.130 0.117 N27 A1D59 27 A1D59 C28 C22 C 0 1 Y N N N N N -0.754 26.009 49.188 -3.236 2.733 0.073 C28 A1D59 28 A1D59 C29 C23 C 0 1 Y N N N N N 0.219 26.778 48.563 -2.064 2.010 0.130 C29 A1D59 29 A1D59 C30 C24 C 0 1 Y N N N N N 2.375 28.282 47.124 0.369 0.404 0.253 C30 A1D59 30 A1D59 H031 H1 H 0 0 N N N N N N 4.099 26.473 46.466 5.275 1.107 -0.013 H031 A1D59 31 A1D59 H041 H2 H 0 0 N N N N N N 7.075 26.014 46.915 6.198 -1.816 0.067 H041 A1D59 32 A1D59 H061 H3 H 0 0 N N N N N N 3.846 24.886 45.197 6.855 1.892 -0.195 H061 A1D59 33 A1D59 H071 H4 H 0 0 N N N N N N 3.354 22.588 44.348 9.076 2.914 -0.458 H071 A1D59 34 A1D59 H081 H5 H 0 0 N N N N N N 4.994 20.796 44.894 11.083 1.495 -0.576 H081 A1D59 35 A1D59 H091 H6 H 0 0 N N N N N N 6.987 21.262 46.228 10.883 -0.952 -0.430 H091 A1D59 36 A1D59 H101 H7 H 0 0 N N N N N N 7.460 23.524 47.027 8.674 -1.997 -0.154 H101 A1D59 37 A1D59 H111 H8 H 0 0 N N N N N N 4.924 30.135 47.401 2.850 1.157 0.280 H111 A1D59 38 A1D59 H141 H9 H 0 0 N N N N N N 1.630 30.078 43.868 0.180 -3.394 0.508 H141 A1D59 39 A1D59 H151 H10 H 0 0 N N N N N N -0.102 28.656 44.874 -1.905 -2.098 0.414 H151 A1D59 40 A1D59 H181 H11 H 0 0 N N N N N N -1.337 27.229 45.562 -3.473 -1.061 0.349 H181 A1D59 41 A1D59 H211 H12 H 0 0 N N N N N N -3.452 27.323 45.211 -5.902 -0.279 -1.778 H211 A1D59 42 A1D59 H212 H13 H 0 0 N N N N N N -3.299 25.680 44.501 -5.114 -1.495 -0.745 H212 A1D59 43 A1D59 H221 H14 H 0 0 N N N N N N -5.747 27.162 45.453 -7.385 -2.231 -1.438 H221 A1D59 44 A1D59 H222 H15 H 0 0 N N N N N N -5.471 26.240 43.936 -7.286 -2.006 0.325 H222 A1D59 45 A1D59 H231 H16 H 0 0 N N N N N N -7.077 25.240 45.427 -8.408 0.000 -1.686 H231 A1D59 46 A1D59 H241 H17 H 0 0 N N N N N N -6.071 23.164 45.345 -10.421 -0.555 -0.526 H241 A1D59 47 A1D59 H251 H18 H 0 0 N N N N N N -6.709 25.311 47.548 -8.982 1.333 0.309 H251 A1D59 48 A1D59 H252 H19 H 0 0 N N N N N N -5.634 23.900 47.266 -8.234 0.106 1.361 H252 A1D59 49 A1D59 H262 H20 H 0 0 N N N N N N -4.923 26.809 47.691 -6.676 1.989 0.964 H262 A1D59 50 A1D59 H261 H21 H 0 0 N N N N N N -4.331 25.349 48.554 -6.803 1.730 -0.793 H261 A1D59 51 A1D59 H281 H22 H 0 0 N N N N N N -0.613 25.660 50.200 -3.194 3.810 -0.005 H281 A1D59 52 A1D59 H291 H23 H 0 0 N N N N N N 1.124 27.035 49.094 -1.109 2.514 0.098 H291 A1D59 53 A1D59 H301 H24 H 0 0 N N N N N N 2.629 27.811 48.062 0.459 1.478 0.184 H301 A1D59 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D59 C02 O01 DOUB N N 1 A1D59 C04 C03 DOUB N E 2 A1D59 C05 C04 SING N N 3 A1D59 C06 C05 DOUB Y N 4 A1D59 C07 C06 SING Y N 5 A1D59 C08 C07 DOUB Y N 6 A1D59 C09 C08 SING Y N 7 A1D59 C10 C09 DOUB Y N 8 A1D59 C03 C02 SING N N 9 A1D59 N11 C02 SING N N 10 A1D59 C12 N11 SING N N 11 A1D59 N13 C12 DOUB Y N 12 A1D59 C14 N13 SING Y N 13 A1D59 C15 C14 DOUB Y N 14 A1D59 C16 C15 SING Y N 15 A1D59 C18 C17 DOUB Y N 16 A1D59 C19 C18 SING Y N 17 A1D59 C21 N20 SING N N 18 A1D59 C22 C21 SING N N 19 A1D59 C23 C22 SING N N 20 A1D59 O24 C23 SING N N 21 A1D59 C25 C23 SING N N 22 A1D59 C26 C25 SING N N 23 A1D59 N20 C19 SING N N 24 A1D59 N27 C19 DOUB Y N 25 A1D59 C28 N27 SING Y N 26 A1D59 C29 C28 DOUB Y N 27 A1D59 C17 C16 SING N N 28 A1D59 C30 C16 DOUB Y N 29 A1D59 C05 C10 SING Y N 30 A1D59 C12 C30 SING Y N 31 A1D59 C17 C29 SING Y N 32 A1D59 N20 C26 SING N N 33 A1D59 C03 H031 SING N N 34 A1D59 C04 H041 SING N N 35 A1D59 C06 H061 SING N N 36 A1D59 C07 H071 SING N N 37 A1D59 C08 H081 SING N N 38 A1D59 C09 H091 SING N N 39 A1D59 C10 H101 SING N N 40 A1D59 N11 H111 SING N N 41 A1D59 C14 H141 SING N N 42 A1D59 C15 H151 SING N N 43 A1D59 C18 H181 SING N N 44 A1D59 C21 H211 SING N N 45 A1D59 C21 H212 SING N N 46 A1D59 C22 H221 SING N N 47 A1D59 C22 H222 SING N N 48 A1D59 C23 H231 SING N N 49 A1D59 O24 H241 SING N N 50 A1D59 C25 H251 SING N N 51 A1D59 C25 H252 SING N N 52 A1D59 C26 H262 SING N N 53 A1D59 C26 H261 SING N N 54 A1D59 C28 H281 SING N N 55 A1D59 C29 H291 SING N N 56 A1D59 C30 H301 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D59 InChI InChI 1.06 "InChI=1S/C24H24N4O2/c29-21-10-14-28(15-11-21)23-17-20(9-13-26-23)19-8-12-25-22(16-19)27-24(30)7-6-18-4-2-1-3-5-18/h1-9,12-13,16-17,21,29H,10-11,14-15H2,(H,25,27,30)" A1D59 InChIKey InChI 1.06 LLCXZJGKTNDVLE-UHFFFAOYSA-N A1D59 SMILES_CANONICAL CACTVS 3.385 "OC1CCN(CC1)c2cc(ccn2)c3ccnc(NC(=O)/C=C/c4ccccc4)c3" A1D59 SMILES CACTVS 3.385 "OC1CCN(CC1)c2cc(ccn2)c3ccnc(NC(=O)C=Cc4ccccc4)c3" A1D59 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)/C=C/C(=O)Nc2cc(ccn2)c3ccnc(c3)N4CCC(CC4)O" A1D59 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C=CC(=O)Nc2cc(ccn2)c3ccnc(c3)N4CCC(CC4)O" # _pdbx_chem_comp_identifier.comp_id A1D59 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{E})-~{N}-[4-[2-(4-oxidanylpiperidin-1-yl)pyridin-4-yl]pyridin-2-yl]-3-phenyl-prop-2-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D59 "Create component" 2024-02-16 PDBC A1D59 "Initial release" 2024-07-24 RCSB #