data_A1D5A # _chem_comp.id A1D5A _chem_comp.name "(~{Z})-7-[(1~{R},2~{R},3~{R},5~{S})-2-[(~{E},3~{R})-4-(3-chloranylphenoxy)-3-oxidanyl-but-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H29 Cl O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms cloprostenol _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-28 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.915 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1D5A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XJK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1D5A C10 C1 C 0 1 N N R N N N 97.275 121.978 122.586 2.935 2.346 0.516 C10 A1D5A 1 A1D5A C13 C2 C 0 1 N N N N N N 95.299 120.732 122.380 2.776 4.590 -0.506 C13 A1D5A 2 A1D5A C15 C3 C 0 1 N N R N N N 97.022 121.454 120.995 1.598 2.492 -0.241 C15 A1D5A 3 A1D5A C17 C4 C 0 1 N N N N N N 98.491 120.910 119.051 -0.224 0.874 -0.082 C17 A1D5A 4 A1D5A C21 C5 C 0 1 Y N N N N N 101.193 123.768 117.562 -4.897 -0.425 -0.039 C21 A1D5A 5 A1D5A C22 C6 C 0 1 Y N N N N N 100.642 125.037 117.430 -5.113 0.292 -1.207 C22 A1D5A 6 A1D5A C24 C7 C 0 1 Y N N N N N 102.851 125.988 117.342 -7.403 -0.409 -1.213 C24 A1D5A 7 A1D5A C26 C8 C 0 1 Y N N N N N 102.575 123.609 117.582 -5.939 -1.134 0.540 C26 A1D5A 8 A1D5A C02 C9 C 0 1 N N N N N N 95.988 128.174 125.090 5.493 -4.782 -0.605 C02 A1D5A 9 A1D5A C04 C10 C 0 1 N N N N N N 97.226 127.986 124.197 4.583 -3.694 -0.098 C04 A1D5A 10 A1D5A C05 C11 C 0 1 N N N N N N 98.211 126.934 124.754 5.417 -2.473 0.296 C05 A1D5A 11 A1D5A C06 C12 C 0 1 N N N N N N 97.807 125.493 124.365 4.493 -1.368 0.812 C06 A1D5A 12 A1D5A C07 C13 C 0 1 N N N N N N 99.055 124.574 124.419 5.315 -0.166 1.200 C07 A1D5A 13 A1D5A C08 C14 C 0 1 N N N N N N 99.017 123.558 123.533 5.017 1.015 0.718 C08 A1D5A 14 A1D5A C09 C15 C 0 1 N N N N N N 97.774 123.453 122.607 3.756 1.204 -0.086 C09 A1D5A 15 A1D5A C11 C16 C 0 1 N N S N N N 96.107 121.876 123.188 3.683 3.680 0.348 C11 A1D5A 16 A1D5A C14 C17 C 0 1 N N R N N N 96.173 120.428 121.093 1.352 4.021 -0.286 C14 A1D5A 17 A1D5A C16 C18 C 0 1 N N N N N N 98.352 120.981 120.382 0.489 1.801 0.510 C16 A1D5A 18 A1D5A C18 C19 C 0 1 N N R N N N 99.822 120.437 118.446 -1.333 0.184 0.668 C18 A1D5A 19 A1D5A C19 C20 C 0 1 N N N N N N 100.838 121.589 118.483 -2.639 0.316 -0.117 C19 A1D5A 20 A1D5A C23 C21 C 0 1 Y N N N N N 101.471 126.147 117.320 -6.365 0.298 -1.791 C23 A1D5A 21 A1D5A C25 C22 C 0 1 Y N N N N N 103.403 124.721 117.472 -7.192 -1.120 -0.045 C25 A1D5A 22 A1D5A O01 O1 O 0 1 N N N N N N 94.916 128.626 124.601 6.687 -4.601 -0.647 O01 A1D5A 23 A1D5A O03 O2 O 0 1 N N N N N N 96.051 127.879 126.313 4.977 -5.953 -1.010 O03 A1D5A 24 A1D5A O12 O3 O 0 1 N N N N N N 95.378 123.135 123.127 4.927 3.462 -0.322 O12 A1D5A 25 A1D5A O20 O4 O 0 1 N N N N N N 100.336 122.638 117.671 -3.665 -0.437 0.534 O20 A1D5A 26 A1D5A O28 O5 O 0 1 N N N N N N 99.613 120.046 117.125 -1.487 0.788 1.954 O28 A1D5A 27 A1D5A O29 O6 O 0 1 N N N N N N 95.317 120.365 119.913 0.495 4.363 -1.377 O29 A1D5A 28 A1D5A CL27 CL1 CL 0 0 N N N N N N 105.179 124.528 117.498 -8.498 -2.006 0.679 CL27 A1D5A 29 A1D5A H1 H1 H 0 1 N N N N N N 98.044 121.330 123.032 2.747 2.154 1.573 H1 A1D5A 30 A1D5A H2 H2 H 0 1 N N N N N N 94.302 121.096 122.091 2.833 5.621 -0.157 H2 A1D5A 31 A1D5A H3 H3 H 0 1 N N N N N N 95.194 119.827 122.996 3.055 4.528 -1.558 H3 A1D5A 32 A1D5A H4 H4 H 0 1 N N N N N N 96.619 122.298 120.416 1.686 2.090 -1.250 H4 A1D5A 33 A1D5A H5 H5 H 0 1 N N N N N N 97.670 121.184 118.405 -0.016 0.606 -1.107 H5 A1D5A 34 A1D5A H6 H6 H 0 1 N N N N N N 99.569 125.161 117.413 -4.303 0.845 -1.659 H6 A1D5A 35 A1D5A H7 H7 H 0 1 N N N N N N 103.495 126.851 117.258 -8.380 -0.406 -1.674 H7 A1D5A 36 A1D5A H8 H8 H 0 1 N N N N N N 103.004 122.623 117.683 -5.773 -1.696 1.447 H8 A1D5A 37 A1D5A H9 H9 H 0 1 N N N N N N 97.750 128.950 124.115 3.878 -3.414 -0.881 H9 A1D5A 38 A1D5A H10 H10 H 0 1 N N N N N N 96.894 127.663 123.199 4.034 -4.055 0.772 H10 A1D5A 39 A1D5A H11 H11 H 0 1 N N N N N N 99.214 127.141 124.354 6.122 -2.753 1.080 H11 A1D5A 40 A1D5A H12 H12 H 0 1 N N N N N N 98.231 127.013 125.851 5.966 -2.112 -0.573 H12 A1D5A 41 A1D5A H13 H13 H 0 1 N N N N N N 97.394 125.491 123.346 3.789 -1.089 0.028 H13 A1D5A 42 A1D5A H14 H14 H 0 1 N N N N N N 97.048 125.122 125.069 3.945 -1.729 1.681 H14 A1D5A 43 A1D5A H15 H15 H 0 1 N N N N N N 99.877 124.733 125.102 6.151 -0.278 1.875 H15 A1D5A 44 A1D5A H17 H17 H 0 1 N N N N N N 99.823 122.842 123.469 5.674 1.853 0.896 H17 A1D5A 45 A1D5A H19 H19 H 0 1 N N N N N N 98.047 123.764 121.588 3.171 0.285 -0.065 H19 A1D5A 46 A1D5A H20 H20 H 0 1 N N N N N N 96.975 124.106 122.988 4.015 1.447 -1.116 H20 A1D5A 47 A1D5A H21 H21 H 0 1 N N N N N N 96.205 121.548 124.233 3.858 4.136 1.322 H21 A1D5A 48 A1D5A H22 H22 H 0 1 N N N N N N 96.692 119.469 121.239 0.937 4.373 0.658 H22 A1D5A 49 A1D5A H23 H23 H 0 1 N N N N N N 99.175 120.706 121.025 0.282 2.070 1.535 H23 A1D5A 50 A1D5A H24 H24 H 0 1 N N N N N N 100.209 119.601 119.047 -1.087 -0.872 0.790 H24 A1D5A 51 A1D5A H25 H25 H 0 1 N N N N N N 101.807 121.245 118.093 -2.931 1.365 -0.162 H25 A1D5A 52 A1D5A H26 H26 H 0 1 N N N N N N 100.964 121.944 119.517 -2.496 -0.065 -1.128 H26 A1D5A 53 A1D5A H27 H27 H 0 1 N N N N N N 101.043 127.133 117.217 -6.532 0.852 -2.703 H27 A1D5A 54 A1D5A H28 H28 H 0 1 N N N N N N 95.213 128.054 126.725 5.601 -6.621 -1.327 H28 A1D5A 55 A1D5A H29 H29 H 0 1 N N N N N N 95.858 123.803 123.603 5.446 4.266 -0.458 H29 A1D5A 56 A1D5A H30 H30 H 0 1 N N N N N N 98.985 119.334 117.101 -1.707 1.729 1.923 H30 A1D5A 57 A1D5A H31 H31 H 0 1 N N N N N N 94.718 119.632 119.994 0.310 5.310 -1.449 H31 A1D5A 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D5A O28 C18 SING N N 1 A1D5A C23 C24 DOUB Y N 2 A1D5A C23 C22 SING Y N 3 A1D5A C24 C25 SING Y N 4 A1D5A C22 C21 DOUB Y N 5 A1D5A C25 CL27 SING N N 6 A1D5A C25 C26 DOUB Y N 7 A1D5A C21 C26 SING Y N 8 A1D5A C21 O20 SING N N 9 A1D5A O20 C19 SING N N 10 A1D5A C18 C19 SING N N 11 A1D5A C18 C17 SING N N 12 A1D5A C17 C16 DOUB N E 13 A1D5A O29 C14 SING N N 14 A1D5A C16 C15 SING N N 15 A1D5A C15 C14 SING N N 16 A1D5A C15 C10 SING N N 17 A1D5A C14 C13 SING N N 18 A1D5A C13 C11 SING N N 19 A1D5A C10 C09 SING N N 20 A1D5A C10 C11 SING N N 21 A1D5A C09 C08 SING N N 22 A1D5A O12 C11 SING N N 23 A1D5A C08 C07 DOUB N Z 24 A1D5A C04 C05 SING N N 25 A1D5A C04 C02 SING N N 26 A1D5A C06 C07 SING N N 27 A1D5A C06 C05 SING N N 28 A1D5A O01 C02 DOUB N N 29 A1D5A C02 O03 SING N N 30 A1D5A C10 H1 SING N N 31 A1D5A C13 H2 SING N N 32 A1D5A C13 H3 SING N N 33 A1D5A C15 H4 SING N N 34 A1D5A C17 H5 SING N N 35 A1D5A C22 H6 SING N N 36 A1D5A C24 H7 SING N N 37 A1D5A C26 H8 SING N N 38 A1D5A C04 H9 SING N N 39 A1D5A C04 H10 SING N N 40 A1D5A C05 H11 SING N N 41 A1D5A C05 H12 SING N N 42 A1D5A C06 H13 SING N N 43 A1D5A C06 H14 SING N N 44 A1D5A C07 H15 SING N N 45 A1D5A C08 H17 SING N N 46 A1D5A C09 H19 SING N N 47 A1D5A C09 H20 SING N N 48 A1D5A C11 H21 SING N N 49 A1D5A C14 H22 SING N N 50 A1D5A C16 H23 SING N N 51 A1D5A C18 H24 SING N N 52 A1D5A C19 H25 SING N N 53 A1D5A C19 H26 SING N N 54 A1D5A C23 H27 SING N N 55 A1D5A O03 H28 SING N N 56 A1D5A O12 H29 SING N N 57 A1D5A O28 H30 SING N N 58 A1D5A O29 H31 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1D5A InChI InChI 1.06 "InChI=1S/C22H29ClO6/c23-15-6-5-7-17(12-15)29-14-16(24)10-11-19-18(20(25)13-21(19)26)8-3-1-2-4-9-22(27)28/h1,3,5-7,10-12,16,18-21,24-26H,2,4,8-9,13-14H2,(H,27,28)/b3-1-,11-10+/t16-,18-,19-,20+,21-/m1/s1" A1D5A InChIKey InChI 1.06 VJGGHXVGBSZVMZ-QIZQQNKQSA-N A1D5A SMILES_CANONICAL CACTVS 3.385 "O[C@@H](COc1cccc(Cl)c1)\C=C\[C@H]2[C@H](O)C[C@H](O)[C@@H]2C\C=C/CCCC(O)=O" A1D5A SMILES CACTVS 3.385 "O[CH](COc1cccc(Cl)c1)C=C[CH]2[CH](O)C[CH](O)[CH]2CC=CCCCC(O)=O" A1D5A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)OC[C@@H](/C=C/[C@H]2[C@@H](C[C@@H]([C@@H]2C/C=C\CCCC(=O)O)O)O)O" A1D5A SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)OCC(C=CC2C(CC(C2CC=CCCCC(=O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1D5A _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{Z})-7-[(1~{R},2~{R},3~{R},5~{S})-2-[(~{E},3~{R})-4-(3-chloranylphenoxy)-3-oxidanyl-but-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1D5A "Create component" 2023-12-28 PDBC A1D5A "Initial release" 2024-02-28 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1D5A _pdbx_chem_comp_synonyms.name cloprostenol _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #